Silkworm Genome Informatics Database

Gene

KWMTBOMO14514

Annotation

PREDICTED:_uncharacterized_protein_LOC106141703_[Amyelois_transitella]

Location

Bomo_Chr24(-):9104209-9110863 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.51 Nuclear Reliability : 1.958

CDS

ATGCCTTTAACTAGAAATCAAGATCGCCAGCAACGTCGCGAAGACGACGTTATTCCTGCTGCAGATGCAAATGCCAACGAAAATCACGAGGAGCATGATAGCCCCCATGATCGCCCCCACGCCGAATCACGTAGCAACAATTCTACGTTCAACCTGGATGATGTTTCAGCGTTGATGGCCTCGCTGCAACGTTCGCAGGCCGAAACATTTAAGAACATTATGTCGTACGTGATGGAACAAAGATCGTCGACTCCGGCACCTCCGCCGATGCCCCCAGTGAACGTAGATGGTACCTTGGCGCGTTGCAGAGCTTCTTTCAGCGGTGCACCTGGTGAATCTGTTGAGGCCTTTATAGATGCAATTGAAAGCTATACAGAATGCGTTCAAGTATCTGACGCTAACATCATACGAGGCCTAGCCATGCTTTTGTCTGCTGACGCAGCTACGTGGTGGCTAGGATTAAAGCATCACATCTCCACTTGGAACGAAGCCAAAGAAAATTTAATATATGCATATGGCACCCGCCTTCCACCACATAGAATATATTTGGAAATATTTGCTTCCCCGCAGGATAACGAAAACACAGACAAGTTTGTTGCTCGTATTCGTGCGCTTATGGCAAAGCTACCGCGGGATGATATTACTGAAAAAGTACAACTTGATATGATATACGGGTTGCTTCATAATAGAATACGCACAAGATTGCGCCGTGAAGAAATCACATCTTTCAATTCATTATTAAACCATGCTCGGAATATAGAAGATTCGATAGAGGAGACTCAATCGAGACCAGTGTCGTCCACTAGTGGTGTGCGTTCGATCCGTGCCCAGCCGGCCCCGGCTGCGAGTCGGCCTGAACCGTGCGCCGCTCGTGCGAGTGCGCCGGCGCCGCGCGCGCGCTTTCCTAACTCCGCCGCGGCCGTCGTGCCCGCCACCGCGGTGCCTGTCGCTGTCGCCCAGCCTACCGTTGCCACGCCTGCCGCTGCTGTGCCAGGTTCTGCAGAGCAATTCGTGACCACGAAGAAACAGCGTCCAGTGTGCTCCTACTGCAAACGGTTTGGACATGCACGGGAACAGTGCCGTAAGTTAAACAACCGAGCGTCCGTGTACGACCGTGAGAGTGATGATAGGTATTTGCATTTACGGCCTATTTTCAAAATTCAAGTTCTCGGTAAACAGGGTACTGCACTTATAGATACAGCAGCTAAGCATTGTATTGCTGGTCACACGCTGTATGCTCTCCTTCTGCAAAAGGGTCACCCTCTTACTCCCTCCACTAGGCGAGTCAAACTTGCTGATGGGCATGTTCGGAATATGGATGTATTGACAACCATATTACCAGTGAGGTTAGAACACATAGTGATTGATATTCCATTTATAATCTTCCCTGATTCTAATGATAATGAAACTTTACTGGGTATTGATTTTATTAATGCTGCCAAAGTTATTATTGATTTTCATCGTCATGAATGGTATTTTAGTACTGATGCTAAGGTGCATTATAAATTACTTTTTGAACCTATGTCTCGTGGTGTGTGCATAGCTTCTACTAACATGCTTCGGGATGATGAAGGTATGCACTTGCAATCAGCTGAGCGCCAAGCATTGTCTGAGTTCCTTATTCGGCATGAAAGTATTTTTACAGCAGGGGGAGGTCCGACACCATTCATAGAACATTGCATAGACACCGGAGATCACCCCCCGATAGCTGTGCCGCCCTATCGCCTTAACCCTTCCAAGAAGGAGACGATGAAGAATGAAATAGAGAAGATGCTGGCAGATGACATCATTGAAGAGTGCGAATCCGCCTGGTGCTCTCCTGCATTGATGATACCGAAGTCCAATGGTAATGTAAGATTCTGCGTGGATTACAGGCGCTTAAATGAAGTAACCAAATCGGATACTTACCCACTCCCACGCATTGATGATCTTCTCCAGAGTACGAAGAAGAATTGTTACATGACCACAATAGACCTTCGTTCTTCATATTGGCAAGTGATGGTCCGAGAAGCAGACAGAGACAAAACAGCTTTTGTCTGTCCCCTAGGCACTTATCGTTTTAAAAGAATGCCGTTCGGCTTGAAGAATGCGCCGGCGACTTTCCAAAGGCTTATTGATCGTCTACGCTCCTGTGCTGCTTTGAAGGATGTTACAGTACTTGCTTATCTAGACGATTTGTTAATTATTTCAGAAGGATTCCAGCAACACCTACAAGACCTGGAAGCTGTTTTTAGACGTTTGTCTGAATTTAAACTTCACGTAAACAGAGAGAAGTGCACTTTTGCCAAAGAAAGGGTCCGTTATCTGGGCCACGTCATCACTCCAGACGGTGTGTCTCCTGACCCTGAGAAGGTCAGTGCTGTCCTTAATATGCTGGAACCATCTAACCTAAAACATTTAAGAACTTTTCTCCAAACATGCTCTTGGTTCAGGAAGTTTATTCCAAACTTTTCAAAGATAGCAGAACCGCTTACTCGACTGACCAAGAAGAATTACACATGGATCTGGGGACCTGAACAAACACAGGCATTCAAAGAATTGAAGCGTCTGCTGACCACGGCGCCCGTACTTGTTCAAGCGAATTTTAAACAACCCTTAGTACTGCGTACCGACGCGAGCAACTATGCACTTGGCGCAGTTTTAGCTCAAGGGGAAGGCAAGGACGAAAGGCCTATCGAGTATGCTAGCCGCCTACTCACCGCAGCGGAGCGCAACTACTCTACTACAGAACGGGAAGCGCTTGCTGTAGTCTGGGCCGTGGAGCGTTTCAGGCCATACCTCGACGGCCAACCAATTATTATAGGCAGTGACCACCAACCCTTGCGTTGGTTGCTTTCTTTAAAGTCTCCTGCTGGTAGGTTGGTCCGTTGGGCGCTTAAACTCCAAGAATTTGACATCAGATTCGAGTACACCCCAGGAAAAGCTAACGTTGTCGCTGACACGTTAAGTAGACCGATCTGTTCCAACGAAACACAAAATAACTGCGGCATCTGTTCTGTCATTTGCGACCTGCCCACCAAGTCACCTACCCAGTTACGTCAAGACCAGTTGACTGATCCGGAAATACAGAAGATCGTCACAGAACTGGAAGGAGTGGATGAACTTGCTGCTAAAAGATGGTCAGAAAGAGGATTTCTAATGGAACAAGGTGTTTTATATCGACTTAATCCGGATTCTGATGCCGAGGCCCCACAATTAGTCATTCCTGCCCATCAAGTGACCGACGTTCTCAAAGAGCTTCACGATGCCCCTACCGCTGGACATGCAGGAATTGACCGGACTTACCAACAAGTCTCACGTCTGTTCTACTTCACAGGAATGAGAAGAATCATAACCGACTATGTAAAGGCATGTGTCCATTGTCAACGCTATAAGGCTGCTAATACCAAGCCTCCAGGTCTATTGCAGACGCCGGTGATGAACCAGCGCAACGAGGTCTTGGCAGTTGATCTTTTCGGCCCGTTGCCACCTGGAAAACAGGGGGAGCGTTGGATCTTGCTAATAGAAGATACTGCTACGAGGTGGACAGAACTTTTCCCATTGAAGGAAGCTACTGCTGAGGCGTGTGCACATGTCCTCATAGAGGAGTATTTTATGAGATTTGGTCTTCCACGCCGACTAGTTTCTGATAATGGCGTACAATTTATTTCGGCAGTCATGCGTCAATGCATGTCCATCCTGGGGATAAAGCAAAACCTTATCCCTCTCTATCACCCAGAAGCAAACCCTGCCGAACGTAAAAACAGAGATCTTAAGACTTTATTAGCACAACTCGTGGAATGTGACCACACTTCCTGGCCAAACATGTTACCAGTGATTCGATTCGCTCTTAATAACGCTAAATGTCGCACCACAGGTATGTCACCTGCTTACTTGTCATTTGGCAGAGAGATGAGGTCCCCCACAGAAGTCACTCATGACCTTCGTGCTGTTCTAGACAAAGATAACTTCAAGATAAAGCTAAAGGGTATGCTGATCGTTCGAGACGGCCCATTGAAACATTCAACGAAGGTGACATGGTTCTCATCAAATCACACGTCCTCAGTCAGCCCTACTACTTACCACGTCGCGCATGTTGACAAACCTGATGAAGTTTTAGGGAAATATCATGTGAACGATCTCACTCTATACCGTGAGAATCAGAGTGATGCTCTTCCGCGGCCGGTGATGCCTAAAAAGAAACGTGGTCGTCCCCCAAATAATGTTAAAACAGATTCTCGAGTTCCAGGGCATATGACGACACGGCATGCTGAACCATGTGCTGAAGCTCCACGTCTTTCTCCCGCAGCTGGTGGGAGATTGATGTTAACCTATCATAAAGGTCTGACCATGATGTGTGTGTGCAAGATGTAA

Protein

MPLTRNQDRQQRREDDVIPAADANANENHEEHDSPHDRPHAESRSNNSTFNLDDVSALMASLQRSQAETFKNIMSYVMEQRSSTPAPPPMPPVNVDGTLARCRASFSGAPGESVEAFIDAIESYTECVQVSDANIIRGLAMLLSADAATWWLGLKHHISTWNEAKENLIYAYGTRLPPHRIYLEIFASPQDNENTDKFVARIRALMAKLPRDDITEKVQLDMIYGLLHNRIRTRLRREEITSFNSLLNHARNIEDSIEETQSRPVSSTSGVRSIRAQPAPAASRPEPCAARASAPAPRARFPNSAAAVVPATAVPVAVAQPTVATPAAAVPGSAEQFVTTKKQRPVCSYCKRFGHAREQCRKLNNRASVYDRESDDRYLHLRPIFKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQKGHPLTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVIDIPFIIFPDSNDNETLLGIDFINAAKVIIDFHRHEWYFSTDAKVHYKLLFEPMSRGVCIASTNMLRDDEGMHLQSAERQALSEFLIRHESIFTAGGGPTPFIEHCIDTGDHPPIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHVITPDGVSPDPEKVSAVLNMLEPSNLKHLRTFLQTCSWFRKFIPNFSKIAEPLTRLTKKNYTWIWGPEQTQAFKELKRLLTTAPVLVQANFKQPLVLRTDASNYALGAVLAQGEGKDERPIEYASRLLTAAERNYSTTEREALAVVWAVERFRPYLDGQPIIIGSDHQPLRWLLSLKSPAGRLVRWALKLQEFDIRFEYTPGKANVVADTLSRPICSNETQNNCGICSVICDLPTKSPTQLRQDQLTDPEIQKIVTELEGVDELAAKRWSERGFLMEQGVLYRLNPDSDAEAPQLVIPAHQVTDVLKELHDAPTAGHAGIDRTYQQVSRLFYFTGMRRIITDYVKACVHCQRYKAANTKPPGLLQTPVMNQRNEVLAVDLFGPLPPGKQGERWILLIEDTATRWTELFPLKEATAEACAHVLIEEYFMRFGLPRRLVSDNGVQFISAVMRQCMSILGIKQNLIPLYHPEANPAERKNRDLKTLLAQLVECDHTSWPNMLPVIRFALNNAKCRTTGMSPAYLSFGREMRSPTEVTHDLRAVLDKDNFKIKLKGMLIVRDGPLKHSTKVTWFSSNHTSSVSPTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGRLMLTYHKGLTMMCVCKM

Uniprot

A0A224XHC7 A0A139W930

Pubmed

18362917 19820115

EMBL

GFTR01008566 JAW07860.1 KQ972733 KXZ75794.1

Proteomes

UP000007266

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17919   RT_RNaseH_2

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR041577   RT_RNaseH_2
IPR003034   SAP_dom

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A224XHC7 A0A139W930

PDB

4OL8 E-value=1.48666e-72, Score=699

KEGG

105841953 no KO assigned | (RefSeq) uncharacterized LOC105841953

GO

GO:0003676 GO:0015074 GO:0008270 GO:0005634 GO:0005524 GO:0008026 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

1450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14424

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00710

outside

1 - 1450

Pi

335.636014

Theta

187.727839

Tajima's D

2.467364

CLR

0

CSRT

0.943802809859507

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree