Gene

KWMTBOMO14511

Annotation

Putative_115_kDa_protein_in_type-1_retrotransposable_element_R1DM-like_Protein_[Tribolium_castaneum]

Location

Bomo_Chr24(+):8958104-8958763      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.689 Mitochondrial   Reliability : 1.554 Nuclear   Reliability : 1.382

CDS

ATGAGAGAAGAAGAAATATCTCGTACGAAGACAGAATGGGCACAAGACTGGCAGAAGAAGGGAAAAAGTACGTGGACCCGAAAAATCATACCCAATCTTAGACCCTGGATTGAAAGAAAACATGGAGAAATAGACAGATTACTAACACAAGCTCTAAGTGGACATGGAGTCTTCAACACCTATCTCCATGCAACAGGGAAAGCAAAAAATGACATATGCCTATACTGCGAACACGTAGACACACCAGAGCACGCCCTGTTCGAATGCACAAACTTCACAGAGGTAAGAGAGAAAACGGAAGGAAACGATGGAAAAATGACAGCGGAAAACGTGATGAGAAGAATGACGAAAAGTAAATCAGGATGGGATAAATATGCGGAAATGCTCACGGAAATAGGAAAAGGTAAGGGAAAAAGACAAAAGCCTCTCTGA

Protein

MREEEISRTKTEWAQDWQKKGKSTWTRKIIPNLRPWIERKHGEIDRLLTQALSGHGVFNTYLHATGKAKNDICLYCEHVDTPEHALFECTNFTEVREKTEGNDGKMTAENVMRRMTKSKSGWDKYAEMLTEIGKGKGKRQKPL

Uniprot

A0A1B6HLL2   D7GY87   W8ANK7   W8ADE4   D7EL82   V5IAU0   + More
U4UM48   A0A023EQZ1   U4URZ0   A0A2M4AVM9   A0A2M4AVI8   A0A2M4AU98   A0A1W7R6C5   A0A2M4AYV1   D6WC19   A0A224XIZ2   F7IYU8   A0A2S2NBZ8   A0A2S2NS54   A0A2S2P6S8   A0A139W940   F7IYV2   A0A2M4AW08   A0A1Y1KZ52   T1DI88   A0A2S2PTV0   A0A2S2NME4   A0A1W7R6I9   A0A1B6J232   A0A023EW96   A0A139W939   V5I881   A0A139W9B3   A0A139WNC9   A0A023EPM7   T1DG89   A0A139WN93   A0A139W8T3   A0A2M4BC18   K7JLB7   T1DCM0   J9LBU2   A0A2S2P2F0   A0A1W7R645   A0A2M4BC24   V5I8F3   A0A1B6HU71   A0A146MAT2   T1DG59   A0A139W9A6   A0A023EQT4   A0A0Q9WRU0   V5I7P7   A0A2M4CL45   A0A224XSH6   A0A023EPW0   A0A2S2P557   A0A2M4CSA9   K7JVH2   X1WPJ7   V5GJ14   J9LAC1   A0A2S2PIH2   A0A2M4CKQ7   A0A023EL96   A0A2M4ADW9   N6UJZ6   A0A224XA82   A0A139WAH4   U4UU36   N6UHV7   D7GXX9   A0A142LX37   J9KT70   A0A142LX43   K7JW78   A0A182GDR4   A0A0E4C7C1   A0A2S2NUP1   A0A182MNQ3   K7JP42   X1WT13   A0A2S2P0S7   U4U5X6   A0A2M4BDI3   A0A2M4BBV9   A0A2M4BC01   J9JWJ3   A0A142LX45   A0A2S2PFB9   A0A023ENU2   K7JVV4   A0A2S2Q1A1   T1I5J5   Q868R6   A0A0K8VPH1  

Pubmed

18362917    19820115    24495485    23537049    24945155    28004739    + More
24330624    20075255    26823975    17994087    25527032    26483478    12644555   

EMBL

GECU01032129    JAS75577.1    KQ971864    EFA13315.2    GAMC01020517    JAB86038.1    + More
GAMC01020519    GAMC01020515    JAB86040.1    DS497819    EFA11934.1    GALX01000600    JAB67866.1    KB632274    ERL91080.1    GAPW01002043    JAC11555.1    KB632419    ERL95303.1    GGFK01011357    MBW44678.1    GGFK01011482    MBW44803.1    GGFK01011045    MBW44366.1    GEHC01000964    JAV46681.1    GGFK01012648    MBW45969.1    KQ971309    EEZ99146.1    GFTR01008427    JAW07999.1    AB593321    BAK38639.1    GGMR01002122    MBY14741.1    GGMR01006977    MBY19596.1    GGMR01012534    MBY25153.1    KQ972691    KXZ75806.1    AB593323    BAK38643.1    GGFK01011630    MBW44951.1    GEZM01069016    JAV66683.1    GALA01001066    JAA93786.1    GGMR01020135    MBY32754.1    GGMR01005740    MBY18359.1    GEHC01000915    JAV46730.1    GECU01014493    JAS93213.1    GAPW01000192    JAC13406.1    KXZ75807.1    GALX01005145    JAB63321.1    KQ972544    KXZ75869.1    KQ971310    KYB29500.1    GAPW01003129    JAC10469.1    GALA01001776    JAA93076.1    KYB29499.1    KQ972982    KXZ75700.1    GGFJ01001453    MBW50594.1    AAZX01008655    GALA01001777    JAA93075.1    ABLF02031810    GGMR01010769    MBY23388.1    GEHC01001045    JAV46600.1    GGFJ01001454    MBW50595.1    GALX01004785    JAB63681.1    GECU01029521    JAS78185.1    GDHC01002080    JAQ16549.1    GALA01000302    JAA94550.1    KXZ75870.1    GAPW01002123    JAC11475.1    CH963857    KRF98317.1    GALX01006065    JAB62401.1    GGFL01001777    MBW65955.1    GFTR01004944    JAW11482.1    GAPW01002021    JAC11577.1    GGMR01011974    MBY24593.1    GGFL01004046    MBW68224.1    AAZX01013013    ABLF02013380    ABLF02013382    GALX01006869    JAB61597.1    ABLF02017307    GGMR01016419    MBY29038.1    GGFL01001583    MBW65761.1    GAPW01003605    JAC09993.1    GGFK01005660    MBW38981.1    APGK01020896    KB740258    ENN80981.1    GFTR01007160    JAW09266.1    KQ971388    KYB24913.1    KB632368    ERL93670.1    APGK01025048    KB740571    ENN80206.1    KQ972160    EFA13619.2    KU543679    AMS38363.1    ABLF02010223    KU543682    AMS38369.1    AAZX01025645    JXUM01056532    KQ561914    KXJ77178.1    HACL01000300    CFW94594.1    GGMR01008270    MBY20889.1    AXCM01017384    AXCM01017385    AAZX01012143    AAZX01012194    ABLF02014378    GGMR01010199    MBY22818.1    KB631774    ERL86016.1    GGFJ01001727    MBW50868.1    GGFJ01001369    MBW50510.1    GGFJ01001370    MBW50511.1    ABLF02013358    ABLF02013361    ABLF02054869    KU543683    AMS38371.1    GGMR01015518    MBY28137.1    GAPW01002982    JAC10616.1    GGMS01002352    MBY71555.1    ACPB03015998    ACPB03015999    ACPB03016000    ACPB03016001    AB090819    BAC57914.1    GDHF01029467    GDHF01011533    JAI22847.1    JAI40781.1   

Proteomes

UP000007266    UP000030742    UP000002358    UP000007819    UP000007798    UP000019118    + More
UP000069940    UP000249989    UP000075883    UP000015103   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF13966   zf-RVT

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR000663   Natr_peptide       
IPR026960   RVT-Znf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A1B6HLL2   D7GY87   W8ANK7   W8ADE4   D7EL82   V5IAU0   + More
U4UM48   A0A023EQZ1   U4URZ0   A0A2M4AVM9   A0A2M4AVI8   A0A2M4AU98   A0A1W7R6C5   A0A2M4AYV1   D6WC19   A0A224XIZ2   F7IYU8   A0A2S2NBZ8   A0A2S2NS54   A0A2S2P6S8   A0A139W940   F7IYV2   A0A2M4AW08   A0A1Y1KZ52   T1DI88   A0A2S2PTV0   A0A2S2NME4   A0A1W7R6I9   A0A1B6J232   A0A023EW96   A0A139W939   V5I881   A0A139W9B3   A0A139WNC9   A0A023EPM7   T1DG89   A0A139WN93   A0A139W8T3   A0A2M4BC18   K7JLB7   T1DCM0   J9LBU2   A0A2S2P2F0   A0A1W7R645   A0A2M4BC24   V5I8F3   A0A1B6HU71   A0A146MAT2   T1DG59   A0A139W9A6   A0A023EQT4   A0A0Q9WRU0   V5I7P7   A0A2M4CL45   A0A224XSH6   A0A023EPW0   A0A2S2P557   A0A2M4CSA9   K7JVH2   X1WPJ7   V5GJ14   J9LAC1   A0A2S2PIH2   A0A2M4CKQ7   A0A023EL96   A0A2M4ADW9   N6UJZ6   A0A224XA82   A0A139WAH4   U4UU36   N6UHV7   D7GXX9   A0A142LX37   J9KT70   A0A142LX43   K7JW78   A0A182GDR4   A0A0E4C7C1   A0A2S2NUP1   A0A182MNQ3   K7JP42   X1WT13   A0A2S2P0S7   U4U5X6   A0A2M4BDI3   A0A2M4BBV9   A0A2M4BC01   J9JWJ3   A0A142LX45   A0A2S2PFB9   A0A023ENU2   K7JVV4   A0A2S2Q1A1   T1I5J5   Q868R6   A0A0K8VPH1  

KEGG

NA   

GO

GO:0016021   GO:0003964   GO:0003676   GO:0008270   GO:0005179   GO:0005576  

Length:

143

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00492

Exp number, first 60 AAs:

0.00369

Total prob of N-in:

0.49338

outside

1  -  143

 

 

Pi

272.988925

Theta

208.245001

Tajima's D

0.946872

CLR

0

CSRT

0.647917604119794

Interpretation

Uncertain