SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14508
Pre Gene Modal
BGIBMGA004477
Annotation
Gag_polyprotein_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 3.456
 

Sequence

CDS
ATGAACATCCCGACAGCACATCTTAATAAAGATGAATTGTTATTTGAGCTGTCAATCTTTGGCATCTTCAGCGATCCCGATGCGACCAGGGACGCGCTTCGCCAGCAGCTGCGGCAGGCGCTCCGTCTTCACAGACGAGGCAGCCTGAAGCTGGATGCGGGCGAGGTTGTGGATGACGTGTCGACCGTCACTACCAAGGTCACCGAGCTGGAGACGCTACTTGCGACTGAGGTACCCTCAACACAACGAAACACACGCATTAAAGCTAGGTCCACATACCTTTTAGATAGAATTGAAAGAATGAAGGATGTGAGCGTGGCGTGTATGAAATTAAAGTCCAGGTTGGTTAGGCTGCTTGCGGCTCTTAGTGATGATGAAGGTGGAGGTACTGACTCCGAATCTGAGCTACAGAGTTGTGCTAGTCCTACAAAGCCACATACTTCGGGCTGTCCTCATGATGTGGATGGTACCAGTCATCCCATTCAATTTAATGAAAGGCTAACAAATTTTAATTCCTTCAACATCAAATATGATGGCACAACGTGTATAAGAGCATTTTTAGAACGTGTAAAAGAGTTACAATTATCAAGAAATGTTAGTGAGAAACAATTATTATACGGATTCCCGGATCTCTTAGAAAAAGCACCTTTATTTTGGTTTAGGGCCAATCGTTCAAATTTTAAAAGCTTGAACGATCTTTTTAGCGAATTAATTAATGATTTTGATACACCTGATTACGATTATAAGTTAATGAACGAAATTAGAAATCGTTCACAATTTAAAAATGAGTCAATTGTCGCGTATTTATCTGTAATGCAACAGATGTTTTCTAGACTTAATCGTGACCTCTCTGAAGAACAAAAATTAGAAATTTTACTTCATAACATTCGACCTGAATACATCAAAGACCTTGCATTGATAGATATCACTACGATATCACAGTTAAAATCACTCCTTAAGAGATTAACATAA
Protein
MNIPTAHLNKDELLFELSIFGIFSDPDATRDALRQQLRQALRLHRRGSLKLDAGEVVDDVSTVTTKVTELETLLATEVPSTQRNTRIKARSTYLLDRIERMKDVSVACMKLKSRLVRLLAALSDDEGGGTDSESELQSCASPTKPHTSGCPHDVDGTSHPIQFNERLTNFNSFNIKYDGTTCIRAFLERVKELQLSRNVSEKQLLYGFPDLLEKAPLFWFRANRSNFKSLNDLFSELINDFDTPDYDYKLMNEIRNRSQFKNESIVAYLSVMQQMFSRLNRDLSEEQKLEILLHNIRPEYIKDLALIDITTISQLKSLLKRLT

Summary

Pfam
PF00098   zf-CCHC        + More
PF03732   Retrotrans_gag
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR005162   Retrotrans_gag_dom       
IPR036533   BAG_dom_sf       
SUPFAM
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
323
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00457
Exp number, first 60 AAs:
0.00352
Total prob of N-in:
0.03435
outside
1  -  323
 
 

Population Genetic Test Statistics

Pi
218.478992
Theta
169.662661
Tajima's D
1.562097
CLR
0.100305
CSRT
0.7971601419929
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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