Silkworm Genome Informatics Database

Gene

KWMTBOMO14508

Pre Gene Modal

BGIBMGA004477

Annotation

Gag_polyprotein_[Operophtera_brumata]

Location

Bomo_Chr24(-):8772801-8773968 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.456

CDS

ATGAACATCCCGACAGCACATCTTAATAAAGATGAATTGTTATTTGAGCTGTCAATCTTTGGCATCTTCAGCGATCCCGATGCGACCAGGGACGCGCTTCGCCAGCAGCTGCGGCAGGCGCTCCGTCTTCACAGACGAGGCAGCCTGAAGCTGGATGCGGGCGAGGTTGTGGATGACGTGTCGACCGTCACTACCAAGGTCACCGAGCTGGAGACGCTACTTGCGACTGAGGTACCCTCAACACAACGAAACACACGCATTAAAGCTAGGTCCACATACCTTTTAGATAGAATTGAAAGAATGAAGGATGTGAGCGTGGCGTGTATGAAATTAAAGTCCAGGTTGGTTAGGCTGCTTGCGGCTCTTAGTGATGATGAAGGTGGAGGTACTGACTCCGAATCTGAGCTACAGAGTTGTGCTAGTCCTACAAAGCCACATACTTCGGGCTGTCCTCATGATGTGGATGGTACCAGTCATCCCATTCAATTTAATGAAAGGCTAACAAATTTTAATTCCTTCAACATCAAATATGATGGCACAACGTGTATAAGAGCATTTTTAGAACGTGTAAAAGAGTTACAATTATCAAGAAATGTTAGTGAGAAACAATTATTATACGGATTCCCGGATCTCTTAGAAAAAGCACCTTTATTTTGGTTTAGGGCCAATCGTTCAAATTTTAAAAGCTTGAACGATCTTTTTAGCGAATTAATTAATGATTTTGATACACCTGATTACGATTATAAGTTAATGAACGAAATTAGAAATCGTTCACAATTTAAAAATGAGTCAATTGTCGCGTATTTATCTGTAATGCAACAGATGTTTTCTAGACTTAATCGTGACCTCTCTGAAGAACAAAAATTAGAAATTTTACTTCATAACATTCGACCTGAATACATCAAAGACCTTGCATTGATAGATATCACTACGATATCACAGTTAAAATCACTCCTTAAGAGATTAACATAA

Protein

MNIPTAHLNKDELLFELSIFGIFSDPDATRDALRQQLRQALRLHRRGSLKLDAGEVVDDVSTVTTKVTELETLLATEVPSTQRNTRIKARSTYLLDRIERMKDVSVACMKLKSRLVRLLAALSDDEGGGTDSESELQSCASPTKPHTSGCPHDVDGTSHPIQFNERLTNFNSFNIKYDGTTCIRAFLERVKELQLSRNVSEKQLLYGFPDLLEKAPLFWFRANRSNFKSLNDLFSELINDFDTPDYDYKLMNEIRNRSQFKNESIVAYLSVMQQMFSRLNRDLSEEQKLEILLHNIRPEYIKDLALIDITTISQLKSLLKRLT

Uniprot

W8AJD3 A0A1B6L8S5 A0A1Y1K1F6 A0A1Y1L0Z1 A0A1Y1L4P6 A0A1Y1L122 + More
A0A1Y1MJK9 A0A1Y1L112 A0A0A9ZGB4

Pubmed

24495485 28004739 25401762

EMBL

GAMC01020693 GAMC01020691 JAB85862.1 GEBQ01019966 JAT20011.1 GEZM01099692 + More
JAV53186.1 GEZM01067867 GEZM01067866 GEZM01067863 GEZM01067855 JAV67349.1 GEZM01067869 GEZM01067865 GEZM01067862 GEZM01067860 JAV67360.1 GEZM01067864 GEZM01067859 GEZM01067856 JAV67372.1 GEZM01029757 JAV85949.1 GEZM01067868 GEZM01067861 GEZM01067858 GEZM01067857 JAV67369.1 GBHO01001056 JAG42548.1

Pfam

PF00098 zf-CCHC + More
PF03732 Retrotrans_gag

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR005162   Retrotrans_gag_dom
IPR036533   BAG_dom_sf

SUPFAM

SSF57756 SSF57756

Gene 3D

1.20.58.120

ProteinModelPortal

W8AJD3 A0A1B6L8S5 A0A1Y1K1F6 A0A1Y1L0Z1 A0A1Y1L4P6 A0A1Y1L122 + More
A0A1Y1MJK9 A0A1Y1L112 A0A0A9ZGB4

KEGG

NA

GO

GO:0008270 GO:0003676 GO:0051087

Length:

323

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00457

Exp number, first 60 AAs:

0.00352

Total prob of N-in:

0.03435

outside

1 - 323

Pi

218.478992

Theta

169.662661

Tajima's D

1.562097

CLR

0.100305

CSRT

0.7971601419929

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree