Gene

KWMTBOMO14503

Pre Gene Modal

BGIBMGA000170

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DHX35_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(+):8505219-8530628      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.069

CDS

ATGCGATATCTGCACGAGATAGGACACAAAGTGTGCGTCACACAGCCAAGGGTCACGGCGGCTGTGTCGCTTGCGTATCGCGTGGCCCAGGAGATAGGAGGCGCAATCGGTCAGGAAGTTGGCTACGCCGCCGGCATGGTATCCGCCAGGACGCCAGAATCTGGGATTGTGTTCATGACGGAAGGCGTATTGCTTCGAGAGATGTTCGCTTCGCCTCTGCTGATGCAGTATTCTTGCATCATACTCGATGAGGTTCACGAAAGGTCACTAATGACCGATGTGCTAATGGGATTATTAAAAAAAATAATTAAAAAAAGAAAGAATCTCAAACTGGTGATATCATCGGCCACCATGAACGCAGAGTTCTTGAAGGACTTCTTCAACACAAATGACAAGAAAGACAGAAACAAACCTGCCACTACGGTCGTCATGTCCGTGCAGGGGCCGACTCATCCTATTGAGATATATTACACTCAAGAACCAGTTCCGGACTATGTGAAAGCGACCGTCGATACAGTCATTAAAATACACGAAAATCAACCGTTAGGTGATATTTTGGCTTTTCTAACTTCGCAAGAAGAGATCCACGCGGCCCTAGAGAGCCTCGAGCAGTACTCGGAGCAGACGCAGGAGCGCAACAAGTCCCGCAGCCACTTCCCCAGCGGCATCAGGGCGGCGGAGTTGGTGGCGGTGCCGCTGTACGGCGCGCTGCCCGCCCGGCGCCAGCTGCGCGCCTGCCTGCCCGCGCCGGCCGCCGCGCGTCGCGTCGTGCTCGCCACCAACCTCGCCGAGACCAGCCTCACCATACCCGGCATCACTTACGTAATCGACTGCGGCTTCCACAAGCTGGCGTACTTTGACCCGGCCTTGGGCGTGCAGGCACAGCACGCGACCGCGGTGTCCCGGGACAACGCCACACAGCGCGCCGGACGCAGCGGCCGCACCGCATCCGGACACTGCTACCGTTTGTACACTGAAGATGAATACGAGAAGCTGCCGGAGAGCGTCCCGCCCGAGATGTGTCGCAGCGACCTGGCGGCGGTGCTGCTGCAGCTCAAGGCTCTCGGCATCCACAACCTGCTGAGGTTCTCGTTCCCCACTCCGCCGCCCGCCAAGAGTCTGCTGTCGGGCCTGGAGACTCTGTACGCGCTGGGCGCCATCGACCACAGCGGCGACTTGACGTCGGACGTGGGGTTCCGCATGGCCGAGCTTCCGGTACCACCCATGGCTGCGAAGATGCTCTGCAGCAGCGGTGAGCTGGGCTGCGTAGACGAGGCTCTGAGCATAGCCGCCATGCTGCAAGTGGACAGCGTCTTCATCAAACCAGCCCACGGACGCGAGGCCGTCGCTTCTAAAGTGTCCCGGAGGAACCATTTTGAGGTGGCGGAGGGCGATATCATCATGTACCTGAACATATTCGACTCGTATCTGAGAGTGAGGAGCTCGTGTGAGGACAAGAGGAAATCAGAGCGGGCGTGCAAACAGTGGTGTCAGAGGTACCGCCTCAATCACAGGGTTCTGGAGAAGGCGGCCGATATACGGGACAGCTTAGAGAAGATCGTCAAAGGGAAGTTTAATATTGAAAATAAGGTCTTCGAGGGTCCCGATCTCGGCACAGCGAAATGCGAAAGAGTGATGAAGTGCGTCCTGTCCGGGTACTTCCCGCAGGCCGCGCGCCTCACCCCGGCCGGCGCCTACCGGGGGCTCCGCGGGGCCGACCTCGCGCTGAGCCCCGACAGCTGTCTGTACGCCGCACCGCCGCCACAATGGGTGACGTTCGCGAGCGTGCAGTGCTCCCGGGACCGCACCTACATGCGCGACGTGATGCCCATAGACCGCAGCTGGCTGCTGGAGCTCGCCCCGCACTACTACAAGGAGACTTGA

Protein

MRYLHEIGHKVCVTQPRVTAAVSLAYRVAQEIGGAIGQEVGYAAGMVSARTPESGIVFMTEGVLLREMFASPLLMQYSCIILDEVHERSLMTDVLMGLLKKIIKKRKNLKLVISSATMNAEFLKDFFNTNDKKDRNKPATTVVMSVQGPTHPIEIYYTQEPVPDYVKATVDTVIKIHENQPLGDILAFLTSQEEIHAALESLEQYSEQTQERNKSRSHFPSGIRAAELVAVPLYGALPARRQLRACLPAPAAARRVVLATNLAETSLTIPGITYVIDCGFHKLAYFDPALGVQAQHATAVSRDNATQRAGRSGRTASGHCYRLYTEDEYEKLPESVPPEMCRSDLAAVLLQLKALGIHNLLRFSFPTPPPAKSLLSGLETLYALGAIDHSGDLTSDVGFRMAELPVPPMAAKMLCSSGELGCVDEALSIAAMLQVDSVFIKPAHGREAVASKVSRRNHFEVAEGDIIMYLNIFDSYLRVRSSCEDKRKSERACKQWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSGYFPQAARLTPAGAYRGLRGADLALSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPIDRSWLLELAPHYYKET

Uniprot

A0A2W1BPQ7   A0A3S2LP81   A0A2A4IX78   A0A336LKN0   A0A154PAE5   A0A336LPM4   + More
A0A3Q2Q3R2   A0A3Q2TUV3   A0A0L7R963   A0A2U9C2B8   A0A1A8EHZ6   A0A3Q2V1G2   A0A1A8B9U7   A0A146X688   A0A1A8JS40   A0A1A8LTG7   A0A1A8IZV7   A0A1A8PJ58   A0A1A7ZK70   A0A182GYF0   A0A3B4Z2R1   A0A1A8HN43   E2A8J9   A0A3Q3LQX6   A0A310SGC4   A0A1A7YID6   A0A3B4YY24   A0A3B4UY66   A0A1D1VRF5   A0A3B4EWJ2   A0A1B6KXF4   A0A087ZX34   A0A3Q1BPD6   A0A3P8RC67   A0A3P9DMB5   A0A3P8SGK2   Q1ECW4   A0A3P9PZF8   A0A2A3EBD7   A0A3Q3B5Q3   A0A3Q1F8I4   W5MB03   A0A2I4BY26   A0A3B4D2Z5   G3N8R5   A2ACQ1   A0A1U8CQ98   A0A087XPJ7   A0A1S3EQ82   A0A3P9PYP0   A0A3B3Y6D1   F7CIJ9   A0A3P9ICX5   A0A3Q2CS13   G3GY02   A0A3P9JX02   H2M0D8   M3Z1Y0   A0A3Q1IVA0   Q0P4P9   A0A3P9JX47   A0A3Q1HJF6   M4AM35   A0A1U7SDS8   A0A1L8EMJ0   A0A287CX99   A0A3B3W0R8   A0A0G2JTM6   A0A151NZ95   A0A287A6J8   A0A3B3C0P0   B0XDJ1   W5NSA5   A0A287B5Q0   A0A151NZH5   Q16ZM8   A0A091LF47   A0A3P8XA22   A0A2Y9IPW7   A0A091QVK6   A0A2U3X047   A0A093CUL6   M3Z1Y1   Q16H49   G3STM8   A0A2D0SHV2   A0A3Q7WCF0   A0A340WL65   H3B694   F6TUS7   A0A3Q3DXQ3   A0A2U3X049   W5JQ55   A0A093JKV6   A0A2U3X048   H2RQG2   A0A3B3RS01   A0A3B3RRY5   H9F8F5  

Pubmed

28756777    26483478    20798317    27649274    25186727    19468303    + More
26319212    18464734    17554307    21804562    23542700    27762356    15057822    22293439    29451363    20809919    30723633    17510324    25069045    9215903    17495919    20920257    23761445    21551351    29240929    25319552   

EMBL

KZ149963    PZC76271.1    RSAL01000526    RVE41455.1    NWSH01005885    PCG63874.1    + More
UFQT01000039    SSX18520.1    KQ434844    KZC08160.1    SSX18519.1    KQ414628    KOC67373.1    CP026253    AWP09809.1    HAEA01016801    SBQ45282.1    HADZ01000073    SBP64014.1    GCES01049259    JAR37064.1    HAEE01002910    SBR22930.1    HAEF01008965    SBR47601.1    HAED01016437    SBR02882.1    HAEH01005707    HAEI01002662    SBR81296.1    HADY01004742    HAEJ01016862    SBP43227.1    JXUM01021127    KQ560592    KXJ81746.1    HAEB01007105    HAEC01016635    SBQ84856.1    GL437616    EFN70269.1    KQ764513    OAD54510.1    HADW01013672    HADX01007759    SBP29991.1    BDGG01000008    GAV02773.1    GEBQ01023848    JAT16129.1    BC117646    AAI17647.1    KZ288292    PBC29083.1    AHAT01025253    AL669910    AYCK01007025    JH000062    EGV98004.1    AEYP01020504    AEYP01020505    AEYP01020506    AEYP01020507    AEYP01020508    BC121956    AAI21957.1    CM004483    OCT60578.1    AGTP01059701    AABR07054472    AABR07054473    AKHW03001485    KYO42197.1    AEMK02000106    DS232762    EDS45499.1    AMGL01026027    DQIR01205083    DQIR01222839    HDB60560.1    KYO42198.1    CH477488    EAT40098.1    KK750249    KFP41556.1    KK804212    KFQ30964.1    KL248778    KFV16584.1    CH478204    EAT33569.1    AFYH01024905    AFYH01024906    AFYH01024907    AFYH01024908    AFYH01024909    ADMH02000429    ETN66537.1    KL206162    KFV79379.1    JU327158    AFE70914.1   

Proteomes

UP000283053    UP000218220    UP000076502    UP000265000    UP000053825    UP000246464    + More
UP000264840    UP000069940    UP000249989    UP000261400    UP000000311    UP000261640    UP000261360    UP000261420    UP000186922    UP000261460    UP000005203    UP000257160    UP000265100    UP000265160    UP000265080    UP000242638    UP000242457    UP000264800    UP000257200    UP000018468    UP000192220    UP000261440    UP000007635    UP000000589    UP000189706    UP000028760    UP000081671    UP000261480    UP000002279    UP000265200    UP000265020    UP000001075    UP000265180    UP000001038    UP000000715    UP000265040    UP000002852    UP000189705    UP000186698    UP000005215    UP000261500    UP000002494    UP000050525    UP000008227    UP000261560    UP000002320    UP000002356    UP000008820    UP000265140    UP000248482    UP000245340    UP000007646    UP000221080    UP000286642    UP000265300    UP000008672    UP000002280    UP000264820    UP000000673    UP000053584    UP000005226    UP000261540   

PRIDE

A2ACQ1    G3GY02   

Pfam

PF07717   OB_NTP_bind        + More
PF04408   HA2
PF00271   Helicase_C
PF00270   DEAD

Interpro

IPR011709   DUF1605        + More
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR007502   Helicase-assoc_dom       
IPR027417   P-loop_NTPase       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

A0A2W1BPQ7   A0A3S2LP81   A0A2A4IX78   A0A336LKN0   A0A154PAE5   A0A336LPM4   + More
A0A3Q2Q3R2   A0A3Q2TUV3   A0A0L7R963   A0A2U9C2B8   A0A1A8EHZ6   A0A3Q2V1G2   A0A1A8B9U7   A0A146X688   A0A1A8JS40   A0A1A8LTG7   A0A1A8IZV7   A0A1A8PJ58   A0A1A7ZK70   A0A182GYF0   A0A3B4Z2R1   A0A1A8HN43   E2A8J9   A0A3Q3LQX6   A0A310SGC4   A0A1A7YID6   A0A3B4YY24   A0A3B4UY66   A0A1D1VRF5   A0A3B4EWJ2   A0A1B6KXF4   A0A087ZX34   A0A3Q1BPD6   A0A3P8RC67   A0A3P9DMB5   A0A3P8SGK2   Q1ECW4   A0A3P9PZF8   A0A2A3EBD7   A0A3Q3B5Q3   A0A3Q1F8I4   W5MB03   A0A2I4BY26   A0A3B4D2Z5   G3N8R5   A2ACQ1   A0A1U8CQ98   A0A087XPJ7   A0A1S3EQ82   A0A3P9PYP0   A0A3B3Y6D1   F7CIJ9   A0A3P9ICX5   A0A3Q2CS13   G3GY02   A0A3P9JX02   H2M0D8   M3Z1Y0   A0A3Q1IVA0   Q0P4P9   A0A3P9JX47   A0A3Q1HJF6   M4AM35   A0A1U7SDS8   A0A1L8EMJ0   A0A287CX99   A0A3B3W0R8   A0A0G2JTM6   A0A151NZ95   A0A287A6J8   A0A3B3C0P0   B0XDJ1   W5NSA5   A0A287B5Q0   A0A151NZH5   Q16ZM8   A0A091LF47   A0A3P8XA22   A0A2Y9IPW7   A0A091QVK6   A0A2U3X047   A0A093CUL6   M3Z1Y1   Q16H49   G3STM8   A0A2D0SHV2   A0A3Q7WCF0   A0A340WL65   H3B694   F6TUS7   A0A3Q3DXQ3   A0A2U3X049   W5JQ55   A0A093JKV6   A0A2U3X048   H2RQG2   A0A3B3RS01   A0A3B3RRY5   H9F8F5  

PDB

6FF7     E-value=9.88693e-104,     Score=965

KEGG

101735465    K13117 ATP-dependent RNA helicase DDX35 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA helicase

GO

GO:0004386   GO:0005524   GO:0016787   GO:0003676   GO:0016021   GO:0034459   GO:0071013   GO:0003723   GO:0008026   GO:0005634   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

627

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04377

Exp number, first 60 AAs:

0.01217

Total prob of N-in:

0.00265

outside

1  -  627

 

 

Pi

284.436426

Theta

185.890521

Tajima's D

1.988317

CLR

0.154853

CSRT

0.881105944702765

Interpretation

Uncertain