SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14497
Pre Gene Modal
BGIBMGA000164
Annotation
PREDICTED:_nephrin-like_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.118 Nuclear   Reliability : 1.216 PlasmaMembrane   Reliability : 1.313
 

Sequence

CDS
ATGTCTGAAAACGTGCTCTCCTTCACGGCCGATGCGTCCGATAACAAAGCGCGTTACAGTTGTGAAGCCAAGAATATCATGATCAGCAACACGCTGAAGGCTGAGATCGACCTGACTGTGCTCTTTGCTCCCGCCCACGTCACTATATCTGGACCCTCTGAAGCGAGAGTCGGCGATCCAGTTCCCCTGACCTGCAGTACAGCTCCTTCGAATCCAGCTGCTGAGATTAAGTGGCTAGTCATAGGGAAGCACCATAAAGAAGCTAGTAATAGAACCGTTATTTCTCCAGAAGGTGGCTGGATTACCTCGTCCAACATAACCGTGATAGTGGAACCGAATAGAAGGTCAATAGTAGTGGTGTGCCACGGCATCAACGCTCAGCTGACGGAAAACGTGATCGCCACTCACACCATCAATGTCTTGTATCCACCTTCGGCGCCCATGATAACTGGCTACGTGCCCGGCACAACCCTCGCTGCCGGAACAGTTCAGAAGCTGGCCTGCATCTCGACTGGAGGGAACCCTTTGGCCACTCTCACGTGGTTTAAGAATGACAAAAAGATACATTCAACAACTAAGACAACGGACAAAGCGGTGTCAGCAGAGATCTCGATCCTGACCAATGTGACCGACAATCAGGCCCAGTACAGATGTGAGGCCACAAACAGTGCGACTGAGATACCACTCTTTGAAACAGTCACACTAAACGTACACTTCGCGCCTGAAGCTGTCAAGGTCCGAGCTGAACCCGACGTGCTTAAGCCGGGAATCGAAGCGACACTGATCTGCGACTCCGCGTCTAGCAACCCGCCTGCCACCCTGTCGTGGTGGCGTGATGGGATCCCAGTTCAAAGTGCTCCGATGCAGCTCAAGAAAGGTCTGCACGGGGGTAAAGTGTCTACAATAGAACTGAAACTCAGCATCACTAAGGAGATGAACGGTGCTGTCTACACGTGCCAGGCCACCAACGAGGTCTTGCAGAGAAGCGTCCATGATGCTTTGGCCTTGAAGGTTTTGTATGCACCAATATTCGACGACACGACATCTTACAACACAGTGGGAATCGAAAACGAGCCGTTGATAATATCGGTCAGAGCGGATGGCAACCCGCCCAGCATCACCTACACGTGGACGAAGGACGGCCTTCCCATCACACAGTCCTCCTACAGCAGCGGCAATGACAGGATAATATCAGAAGGCAGCATGCTGAACATGACGAAATTAACACGTCACGATGCCGGGATATACACTTGTGAGGCTGTGAACTCTCAGGGAGCTGCTGTCGCCAATATTTCCGTATCAGTACACTATCCAGCGGGCATTAAATCGGTGTCTCAAAATGTGGTTGCGAACCCAAACGAAGACGCCGTTTTGTCTTGCACTGCGATCGGAAATCCTCTGTTAGCGGAGCACATTAAATGGGAACGCAAAGGGTACAAAATCGACCCCAAGTCTGTAACTTTTGAACCGAAGAATCTCACAAGTTATTTAATAATACGCAAGGCAAAAAGCGAGAACTTGGGTAATTTTCAGTGTGTGGTCAACAATGGTATTGGAAGTGCGACTAAACAAGACGTTATGCTTATAGTTAAGTTCAAACCCGAGATGGACACTTCACCTAACTTAGTCAAATCGGCCTCAAATGTTGGACAAGTTGGACGTTTGATGTGCAAATGCAAATCAGTACCAGCGCCTAGCTTTACCTGGTCCAAAAATGGAGTGAAGCTACCTGTAAATACATCTACGAAATATTTCGCGGAGTTCCACAAGAACGATCACATCACCTACACCTCGGTGCTGCTCATCAATGACGTGACCACTTCAGACTATGGGTCTTACGAGTGTGGCGCCAGGAACGAGCTTGGGTTCAGTACCACGACGGTGAAATTAGACGTGACCAGCGCACCAGATCAAGTGGTCTCGCTAACTGTAACAAATGTAACTCACAGTACAGTGACATTGGAGTGGGTACCAGGCTTCGACGGAGGACTGCAATCTTGGTATAGGATTCGATATAGAAAAGTGTTCGATGACGTGTACAAGTACGAAGATGTTCTGCCCAAGCACGCTACGAACTTCACCGTTCGTGGGCTCGAGAAGAACACCGATTACGTATTCTCCGTAATGGCTATTAACAAAATAGGGCAAAGCAAATACAGACCGGACGACACGAAGGCGACGACGCTGACTTCTTCGGAAGTAGGCGAACTGAGTACGGTATCCACTGAATACGTAGAGACACCTGACATATCCAAGCCTGTCATTGTTTACGTGTCTCTAACAGGAGCCGTCTTAGTATTGATAAATGTCGCATTGATTGCTTGTTTCGTTTGGAAGCGACGCTTGAGACGCATCAAAGAACAAGCCGGCCAAGCTTCCAAATCAGCCACAATAGAGATGTACGCTCCGTCGTCATACAACGACACCATGACCGGAGAAACCCTCAGCTCCGTCTCTGAGAAATCCGAGACTTACTCCCAGGACGACGGCGATGAGAGGCACCCTCCGCCGATCCCGGAGGTGCCGTCTATACACAATAGGCACATGCTTAGTCAGACAACTGATGCGTACCTAATGGAAGATCAGGGTCTAGTGATCCCACCACCCTTGGATTACCCCCCGCCGAACTACGCAGTGTACGACGGCGACCACTCCAGGACCCTGCCCCACCCTCACAGGCACAAGGACATGAGTGGACACAGCACGCTGGGCAGAAGCGCTGGTAAGCCGAATTACGTACCGGCTCCAAGTCCGATGCCGCCGCTGGATGGCTCCTACTACAACATGTCCTCGGACAGGTACCTGTCGTACCCACCACTCATCGGGGAGTATCTACAGCAGCAAGCCGGTCGCACCCCGACCCCTCCCCAGCAGTACGGAGCGCAGCCTCTGACGAAACCTCATCTGATGAACGGAACTGTGACAGGAGGATCGCCCTCGCACATGCCGAGTCCTCCTCACAATTATGGGCTTGACGTATCTATAGATCGTCAGTCGGCGGGCGGCACTCTGAGGCGGCAGCGGCTCGACAAGATGGCGGCGGTCCCCCCTCCTGACGTCACCGTGCTGCACCCGGGGAACTGCGCGCAGCACCAGATATCCCAGACGCCGTCTACGAAACAGCCGCAGTCGATCCTCAAGGACCCGTCGAGGCACAAGTACGGGCACCCCTACGGGAGTCCCGTCTCCTCCAGCACCCCACACAACAGCAACCAGATCCTGACGGTGCAGAACCTCACCAGCGACACTCCACAGTACGGAACCATCAAGAAGGAGAACAAAAAACAAAACATAGATATTGTTGAAATGACGTCAGCCCATTTCGCGTTCCCTGAACCTCCCCGGGTCACTTCGATTTTGAACCTTATGGAGTATATCCAAGCAGTTCATAATCTAACCACACAGATAAACGTCGTACCTGTATCGGGTTTCGCATTAACTTTTGTTCGTTGGTAA
Protein
MSENVLSFTADASDNKARYSCEAKNIMISNTLKAEIDLTVLFAPAHVTISGPSEARVGDPVPLTCSTAPSNPAAEIKWLVIGKHHKEASNRTVISPEGGWITSSNITVIVEPNRRSIVVVCHGINAQLTENVIATHTINVLYPPSAPMITGYVPGTTLAAGTVQKLACISTGGNPLATLTWFKNDKKIHSTTKTTDKAVSAEISILTNVTDNQAQYRCEATNSATEIPLFETVTLNVHFAPEAVKVRAEPDVLKPGIEATLICDSASSNPPATLSWWRDGIPVQSAPMQLKKGLHGGKVSTIELKLSITKEMNGAVYTCQATNEVLQRSVHDALALKVLYAPIFDDTTSYNTVGIENEPLIISVRADGNPPSITYTWTKDGLPITQSSYSSGNDRIISEGSMLNMTKLTRHDAGIYTCEAVNSQGAAVANISVSVHYPAGIKSVSQNVVANPNEDAVLSCTAIGNPLLAEHIKWERKGYKIDPKSVTFEPKNLTSYLIIRKAKSENLGNFQCVVNNGIGSATKQDVMLIVKFKPEMDTSPNLVKSASNVGQVGRLMCKCKSVPAPSFTWSKNGVKLPVNTSTKYFAEFHKNDHITYTSVLLINDVTTSDYGSYECGARNELGFSTTTVKLDVTSAPDQVVSLTVTNVTHSTVTLEWVPGFDGGLQSWYRIRYRKVFDDVYKYEDVLPKHATNFTVRGLEKNTDYVFSVMAINKIGQSKYRPDDTKATTLTSSEVGELSTVSTEYVETPDISKPVIVYVSLTGAVLVLINVALIACFVWKRRLRRIKEQAGQASKSATIEMYAPSSYNDTMTGETLSSVSEKSETYSQDDGDERHPPPIPEVPSIHNRHMLSQTTDAYLMEDQGLVIPPPLDYPPPNYAVYDGDHSRTLPHPHRHKDMSGHSTLGRSAGKPNYVPAPSPMPPLDGSYYNMSSDRYLSYPPLIGEYLQQQAGRTPTPPQQYGAQPLTKPHLMNGTVTGGSPSHMPSPPHNYGLDVSIDRQSAGGTLRRQRLDKMAAVPPPDVTVLHPGNCAQHQISQTPSTKQPQSILKDPSRHKYGHPYGSPVSSSTPHNSNQILTVQNLTSDTPQYGTIKKENKKQNIDIVEMTSAHFAFPEPPRVTSILNLMEYIQAVHNLTTQINVVPVSGFALTFVRW

Summary

EMBL
KQ459286    KPJ02038.1    RSAL01000219    RVE44076.1    NWSH01006048    PCG63712.1    + More
PCG63713.1    KQ971319    KYB28870.1    APGK01036477    APGK01036478    KB740941    ENN77545.1    LJIG01022859    KRT78353.1    CH477283    EAT44865.1    CH940659    EDW71445.2    GBXI01001940    GBXI01000037    JAD12352.1    JAD14255.1    GAMC01018955    JAB87600.1    GAKP01003106    JAC55846.1    DS231827    EDS29363.1    AE013599    AAF59040.2    GDHF01024331    GDHF01024016    GDHF01022505    GDHF01000273    JAI27983.1    JAI28298.1    JAI29809.1    JAI52041.1    CM002911    KMY92349.1    CH954177    EDV59472.1    GAMC01018957    JAB87598.1    CM000157    EDW89401.1    AF254867    AAF77184.1    CH902619    KPU75758.1    CH963846    EDW72493.2    EDV35616.1    AHN56011.1    GDHF01033767    GDHF01021414    JAI18547.1    JAI30900.1    KRJ98391.1    KMY92350.1    CH933808    EDW09651.2    AJWK01010462    UFQS01002408    UFQT01002408    SSX13977.1    SSX33396.1    OUUW01000001    SPP75207.1    CH480816    EDW46993.1    CM000071    ENO01800.1    CH916375    EDV98404.1    KRJ98389.1    KPU75759.1    ABI31083.1    KMY92351.1    KQS70855.1    EAL26114.3    GDHF01002314    GDHF01001821    JAI50000.1    JAI50493.1    APCN01003525    APCN01003526    ATLV01022241    ATLV01022242    ATLV01022243    KE525330    KFB47304.1    AXCN02001786    KK852546    KDR21614.1    KPU75757.1    AAAB01008848    EAA07064.5    AXCM01002414    KRJ98388.1    DS235042    EEB10837.1    ACPB03011340    GBRD01011337    JAG54487.1    GBRD01010835    JAG54989.1    GBHO01043564    JAG00040.1    GBRD01010834    JAG54990.1    GBRD01010836    JAG54988.1    GBHO01029993    JAG13611.1    CM000362    EDX06243.1    JRES01001577    KNC21874.1    NEVH01006563    PNF38068.1   
Pfam
PF00041   fn3        + More
PF08205   C2-set_2
PF07679   I-set
PF13895   Ig_2
PF00047   ig
Interpro
IPR036116   FN3_sf        + More
IPR013162   CD80_C2-set       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013098   Ig_I-set       
IPR003006   Ig/MHC_CS       
IPR003597   Ig_C1-set       
IPR013151   Immunoglobulin       
SUPFAM
SSF49265   SSF49265        + More
SSF48726   SSF48726       
Gene 3D
PDB
6IAA     E-value=1.44087e-22,     Score=267

Ontologies

Topology

Length:
1151
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
24.15593
Exp number, first 60 AAs:
0.00341
Total prob of N-in:
0.00118
outside
1  -  753
TMhelix
754  -  776
inside
777  -  1151
 
 

Population Genetic Test Statistics

Pi
234.592819
Theta
150.664762
Tajima's D
2.016658
CLR
0.370113
CSRT
0.889455527223639
Interpretation
Uncertain
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