Gene

KWMTBOMO14492

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(+):7914920-7916920      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.145 Nuclear   Reliability : 1.703

CDS

ATGGCCATACGGCGTCAGGACACATCCGCTTCTCCGTCAGAACGATCGGCTCTCAGCAAGCAGATAACGAAATTGGTTCGACGTGACCTTCGACGCTCCACTACTCGAAGAATTGAAAGAGCCATTGAACAGAACCGTGGGTCAAAGGTATTTAACCAGCAGCTTAAGAGAAGTCGTTTATCGAAACTCAAGACCTCCGATGGTAACGTCATCATGTCGCAGACGGGGATTCTCGCTGAGATTGAAAAATATTACGGTCAGCTGTACGAGTCCTGCACCACCCGTTCTGTACAGAACTCAGAACAGAACGATTGTAGAGCCCCACTCACGCGCCATTTCACCGATGAGCTGCCGGACGTCAGTGTGGACGAAATAAGATTGGCTCTGAGACAACTCAAGAATGGAAAAGCCCCCGGAGATGATGGTATAACAACTGAGCTATTGAAAGCAGGAGGAACACCTCTCTTAGTAGAGCTACAGAAGCTTTTCAGCCACGTCATCCACCGCGGGAGAACTCCGAAGGCGTGGAACAACAGTATTGTGATACTTTTTTTCAAAAAAGGAGACAAAACTCTTTTAAAGAACTACAGACCAATCTCCCTCCTGAACCACGTCTATAAGTTGTTCTCACGAGTCATCACAAATCGCCTGGCAAGAAGGTTCGACGAATTTCAGCCCCCAGAGCAGGCTGGGTTTCGGAGCGGCTATGGAACCATAGACCACATACACACAGTGCGGCAGATTATAGAAAAGACCACAGAATATAATCGGCCCCTGTGTTTAGCATTCGTGGATTATGAGAAGGCTTTCGACTCCATCGAGACTTGGTCTGTTCTGGACTCTCTGCGGCGATGCCAGGTAGACCATCGCTATGTCCAGGTGTTGAAATGCCTCTACGACTGTGCCACGATGAATGTTCGAATACAGAATCAGCAGTCTAACCCTATCCAATTGCGTAGGGGAGTGAGAGAGGGGGATGTCATTTCCCCGAAACTGTTTACCAACGCATTGGAAGATATGTTTAAGACGCTGGATTGGAAAAAGATGGGCATAAACATTAATGGCCAGTACATCTCACACTTGCGGTTCGCAGATGACATCGTTCTCATGGCGGAATCGTTGCAAGATCTGCAGCAGATGCTGAATGGCTTAGCAGATTCTTCGCGACGAATTGGACTCCGGATGAACATGGATAAAACCAAAGTGATGTTCAATTGTTACATTAGCCCGGGTCCGATCGTCGTGAAGGGCTGCCCGCTTGAAGCTGTTGATGAATATTTATACCTTGGGCAGACGCTGCAGATGGGTAAACACAGCTTGGAGAGGGAAATCAAGAGAAGGATCCAACTGGGCTGGGCGGCGTTCGGCAAACTGCGTGGAATCTTTTCATCGCACATCCCACAGTGCCTGAAAACGAAAGTTTTTAACCAGTGCGTCCTACCGGTAATGACTTACGGAGCCGAAACGTGGACACTCACAGTACGGTTGGTCCGTCAGCTCAAAGTCGCTCAGCGAGCCATGGAAAGAGTCATGCTCGGAGTTTCTCTGAAGGATAAAATCCGGAATGAGATTATTCGACAGAGAACTAAAGTCATCGACATAGCTCAAAGAGTCAGCAAGCTGAAGTGGCAGTGGGCTGGCCATATATGCCGTAGGACTGACGATCGCTGGAGCAGACGGGTTCTCGAGTGGAGACCGCGCAGCGGAAGACGTAACGTGGGACGCCCCTTGGCTAGATGGTGCGATGACCTCCGCACGGTGGCCGGCAAGAAGTGGATGAGGAGAGCCGCAGACCGGGCTCAGTGGTGTGGATTGGGAGAGGCCTATGTCCAGCAGTGGACGACTGTGGGCTGTTGA

Protein

MAIRRQDTSASPSERSALSKQITKLVRRDLRRSTTRRIERAIEQNRGSKVFNQQLKRSRLSKLKTSDGNVIMSQTGILAEIEKYYGQLYESCTTRSVQNSEQNDCRAPLTRHFTDELPDVSVDEIRLALRQLKNGKAPGDDGITTELLKAGGTPLLVELQKLFSHVIHRGRTPKAWNNSIVILFFKKGDKTLLKNYRPISLLNHVYKLFSRVITNRLARRFDEFQPPEQAGFRSGYGTIDHIHTVRQIIEKTTEYNRPLCLAFVDYEKAFDSIETWSVLDSLRRCQVDHRYVQVLKCLYDCATMNVRIQNQQSNPIQLRRGVREGDVISPKLFTNALEDMFKTLDWKKMGININGQYISHLRFADDIVLMAESLQDLQQMLNGLADSSRRIGLRMNMDKTKVMFNCYISPGPIVVKGCPLEAVDEYLYLGQTLQMGKHSLEREIKRRIQLGWAAFGKLRGIFSSHIPQCLKTKVFNQCVLPVMTYGAETWTLTVRLVRQLKVAQRAMERVMLGVSLKDKIRNEIIRQRTKVIDIAQRVSKLKWQWAGHICRRTDDRWSRRVLEWRPRSGRRNVGRPLARWCDDLRTVAGKKWMRRAADRAQWCGLGEAYVQQWTTVGC

Uniprot

D7F165   D7F157   A0A3S2KX72   D7F166   D7F164   D7F160   + More
D7F159   D7F158   A0A3S2TAR4   A4KWF2   A4KWG0   A0A2W1BMB6   A0A2G8JFM9   A0A2W1BLC9   A0A2G8K4F2   W4YXJ0   W4YXJ1   D7F177   A0A2W1B5F8   A0A2W1BDX2   A0A2W1BCS2   A0A1E1X2U1   D7F176   A0A0K0FAW8   A0A2W1BZV1   A0A016RXU5   A0A016RYK0   A0A016V7H3   A0A016VV56   D7F179   A0A016TIA8   A0A069DX96   A0A023EWU8   D7F178   A0A2H1VS24   A0A016THC6   A0A016WPY4   A0A016UWI5   A0A016UTS3   A0A016WCB8   A0A016WEQ1   A0A023EXV2   A0A016ULU9   A0A2H1VY30   A0A0P4VWD0   A0A016S795   A0A016T7J7   A0A016WA79   A0A016S1D2   A0A016S5B2   A0A016VVN3   W6NSV0   A0A016U784   A0A016SGC3   A0A016UN79   A0A016S403   A0A016SX67   A0A016SUD1   A0A016V6A2   A0A016VN75   A0A016VBB9   A0A016VGM4   A0A016SSP6   A0A016UMK7   A0A016V4K6   A0A016TH80   A0A016V3W4   A0A016UUF2   A0A0N5C0B1   A0A016T8K4   A0A016UGM6   A0A2H1WF27   A0A016TQ81   A0A016TXK2   A0A016S5A1   A0A016VMK8   A0A016VRX3   A0A016WM20   A0A016WVQ3   A0A016UEM0   A0A016RUR3   A0A016W5P9   A0A016SM07   A0A016SWH8   A0A016SL25   A0A016WKT9   A0A016T5Z1   A0A016WJ50   A0A016WJL5   A0A016VW83   A0A016T636   A0A016US53   A0A016URH5   A0A016T805   A0A016U123   A0A016SCZ8   A0A016W1X2  

Pubmed

20470440    17360547    28756777    29023486    28503490    25730766    + More
26334808    25474469    27129103   

EMBL

FJ265550    ADI61818.1    FJ265542    ADI61810.1    RSAL01002130    RVE40575.1    + More
FJ265551    ADI61819.1    FJ265549    ADI61817.1    FJ265545    ADI61813.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    RSAL01002362    RVE40503.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    KZ150072    PZC74016.1    MRZV01002136    PIK34564.1    KZ149985    PZC75698.1    MRZV01000899    PIK42833.1    AAGJ04050748    AAGJ04144474    FJ265562    ADI61830.1    KZ150317    PZC71439.1    KZ150108    PZC73382.1    KZ150485    PZC70710.1    GFAC01005640    JAT93548.1    FJ265561    ADI61829.1    KZ149907    PZC78256.1    JARK01001677    EYB83168.1    EYB83167.1    JARK01001351    EYC23395.1    JARK01001340    EYC31295.1    FJ265564    ADI61832.1    JARK01001434    EYC02684.1    GBGD01000453    JAC88436.1    GBBI01004877    JAC13835.1    FJ265563    ADI61831.1    ODYU01004088    SOQ43598.1    JARK01001438    EYC02111.1    JARK01000173    EYC41342.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01000388    EYC37469.1    JARK01000347    EYC38051.1    GBBI01004876    JAC13836.1    JARK01001370    EYC16150.1    ODYU01004982    SOQ45402.1    GDKW01001596    JAI54999.1    JARK01001621    EYB86109.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000460    EYC36749.1    JARK01001655    EYB84321.1    JARK01001626    EYB85833.1    EYC30828.1    CAVP010058791    CDL95187.1    JARK01001389    EYC11015.1    JARK01001568    EYB89432.1    EYC16376.1    JARK01001639    EYB85201.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    JARK01001513    EYB93986.1    JARK01001353    EYC22263.1    JARK01001344    EYC28218.1    JARK01001349    EYC24735.1    JARK01001346    EYC26784.1    JARK01001517    EYB93530.1    EYC16151.1    JARK01001354    EYC21942.1    EYC02012.1    EYC21941.1    JARK01001361    EYC19034.1    EYB98997.1    JARK01001378    EYC13977.1    ODYU01008249    SOQ51673.1    JARK01001423    EYC04578.1    JARK01001406    EYC07496.1    JARK01001630    EYB85641.1    EYC28635.1    JARK01001341    EYC29807.1    JARK01000204    EYC40631.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    JARK01001711    EYB81734.1    JARK01000732    EYC35149.1    JARK01001543    EYB91354.1    JARK01001502    EYB94855.1    EYB91355.1    JARK01000248    EYC39628.1    JARK01001470    EYB98082.1    EYC40602.1    JARK01000249    EYC39611.1    JARK01000256    EYC39462.1    EYC31302.1    EYB98081.1    EYC40601.1    JARK01001365    EYC18010.1    EYC18009.1    JARK01001464    EYB98786.1    JARK01001401    EYC08686.1    JARK01001581    EYB88505.1    EYC33297.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000035680    UP000024635    UP000025227    + More
UP000046392   

PRIDE

D7F165    D7F157    D7F166    D7F164    D7F160    D7F159    + More
D7F158    D7F177    D7F176    D7F179    D7F178   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01826   TIL
PF03372   Exo_endo_phos
PF10323   7TM_GPCR_Srv

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR019426   7TM_GPCR_serpentine_rcpt_Srv       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F165   D7F157   A0A3S2KX72   D7F166   D7F164   D7F160   + More
D7F159   D7F158   A0A3S2TAR4   A4KWF2   A4KWG0   A0A2W1BMB6   A0A2G8JFM9   A0A2W1BLC9   A0A2G8K4F2   W4YXJ0   W4YXJ1   D7F177   A0A2W1B5F8   A0A2W1BDX2   A0A2W1BCS2   A0A1E1X2U1   D7F176   A0A0K0FAW8   A0A2W1BZV1   A0A016RXU5   A0A016RYK0   A0A016V7H3   A0A016VV56   D7F179   A0A016TIA8   A0A069DX96   A0A023EWU8   D7F178   A0A2H1VS24   A0A016THC6   A0A016WPY4   A0A016UWI5   A0A016UTS3   A0A016WCB8   A0A016WEQ1   A0A023EXV2   A0A016ULU9   A0A2H1VY30   A0A0P4VWD0   A0A016S795   A0A016T7J7   A0A016WA79   A0A016S1D2   A0A016S5B2   A0A016VVN3   W6NSV0   A0A016U784   A0A016SGC3   A0A016UN79   A0A016S403   A0A016SX67   A0A016SUD1   A0A016V6A2   A0A016VN75   A0A016VBB9   A0A016VGM4   A0A016SSP6   A0A016UMK7   A0A016V4K6   A0A016TH80   A0A016V3W4   A0A016UUF2   A0A0N5C0B1   A0A016T8K4   A0A016UGM6   A0A2H1WF27   A0A016TQ81   A0A016TXK2   A0A016S5A1   A0A016VMK8   A0A016VRX3   A0A016WM20   A0A016WVQ3   A0A016UEM0   A0A016RUR3   A0A016W5P9   A0A016SM07   A0A016SWH8   A0A016SL25   A0A016WKT9   A0A016T5Z1   A0A016WJ50   A0A016WJL5   A0A016VW83   A0A016T636   A0A016US53   A0A016URH5   A0A016T805   A0A016U123   A0A016SCZ8   A0A016W1X2  

PDB

6AR3     E-value=0.00904914,     Score=94

KEGG

101740474    no KO assigned | (RefSeq) uncharacterized LOC101740474

GO

GO:0004519   GO:0003964   GO:0016021  

Length:

618

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02281

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.00315

outside

1  -  618

 

 

Pi

304.013666

Theta

191.227102

Tajima's D

1.918026

CLR

0.014301

CSRT

0.868006599670016

Interpretation

Uncertain