Silkworm Genome Informatics Database

Gene

KWMTBOMO14489

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr24(+):7877010-7885353 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.175 Nuclear Reliability : 1.508

CDS

ATGGCTGGTTTCCGAGCGCTATCTCATCAACCTACGAGCTCTGATGGTGAAGTTAAAAAAAAAATTAGAGGGTACCTCCCGCTCCGCGGGGGAGAATCCCTCCGTGCGGTCGAGCGATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGGCAAACATTGCCACGACGAAGGGGGCGACAGCACGGGTCGCGTAAGGGACAGAGTCCCCACCGTGCGCCTCGAACGCTGCGAGAGCCTGATCTCGCTCTACTCGGCGCGGAGCTCCGCAAGGGGCGACGCGTCCAGTGGGCGGGAGACGCCAGCGCTGTTCGTGGACAGTGCTCGACAGCGCACTAGACGGAAGAGGAAGTCGGCTCGTCAGCCGGCATCTGTCCCTCCGTCCGACTCCTCGGAAGGAGAGCCTACCAGCGCCAAGTACTTGGCGTTGGCGGAAGGGCCGGCGACTGCTGCGGCGTCGCCCGCCACCGGCTTTGACAAAAGAGCATCTTGCGGACTGGATGCTGCCTCCTCGGCGCAGTCCAGGGCCGCCTGCCGTGAGGCACATAAACGGTTGGCAACGGTTGGAGAGGTCGAGCGACTGGAGCGCTCCCTGACAGAGGTGGGTCCCTATGACCCCCTCCGTAGATATGGCATCAGCCAAAAAATTGTTTCTACGGTGGCGACGAAGTCGAGTGCAGGCCTAAAGGGCGACTATGTGCGGGCCCTAAAATCGGCCGCCTCCTCCATGGAGGAAGTAATGGTGGAGGTGTTGGAGCGCACCAAGGATGGGGAGACGGAAGGTCTGCGCAAATCGGTGGACCTGCTGCACGCCCGACTGGCCCAAATCAGCGCGGAGAACGGTCATCTTCGCGCTGAGAACGGGCAGATGAAGGTGGACTTGGCCGAGTTGCGCACACTGGTCAACGACCTAATCGAGAAGCAGTGCAACTCGGCCCCTGTACCTACTCCGCTCGAGACCGAAGAGGCCAATGAGGCCGAGGAGCTGAGGCGGCAGCTCCTAATACAGGAGGCACGTAGCTCCAACGTGGAGCGCGCGAGACCGCCCCTCGCCCATGAAGCGAAAAGCAGTGCGCCTACCTACACCTGCGGCTGCGGGGGTGCCGGCACCCACGGCCCCTACAAGAAAACCGGCGTCCGCTCCTGCCCCGCCCCAGCCTGCGAAAGCAGGGCCCGGCAGGAGCCGGACAAAGAAGAAGGGAGGCGTCAACGCCGCCAAACCGGCACTGACCCCCCAGCCCGCCCACTGCCCCCCGCCCCGGCCAACATGGATGAGGCCTGGACGACGGTAGTGCGGCGTGGGCCCAAAAAGGTGGCGGCGCCTCCTGCGCCACGCCCCAAGCCCACCCCTGCGGCCGCCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGAACTGGTAGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTAGTGGAGCTGCTGCCGGCCGGCAAAGAAAAGGGCATCACCTACCACGAGGTGATGACCCAGGCGCGTGGCGGCGTGAATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTATAGAGTGCCCCGGCCCCAACACAAACGCCGCGGCCGAAAAATTGGCGGCCCGGCTGAGGGAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTGAAGATGGGGGAAGTAAAAATCACGGGCCTCGACGAGTGCGCCACGAAAGAGGAGGTCGCCGCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGGGAGCTCCGGGCGACGTACTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCGGTAGTAACGGCGAACCTCCTGGCCACCCCTCCGCAGGGTCGGCCTTCGGACAGCCCTGGATGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAACTGCAGGAGAGCAGGCCGTGGCGTTGTCTTCGGTGCTTCGGCACCGGCCACGGCCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGATCTGTGTTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGCACCACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCTAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAGTCCGCCCCCTCCTCTACCAAAACGAGGAGGGGCGGCAAGAAAAATAAAAAGAAGGAGAGGCCGGCTGCAATAAGGGCAGCCGGCGAGTCAGTTCCCGCCGCGGCACCAGACGAGCCGCAGGGCGGGACAGACGAGGGAGCGATGGACGTAGCCCCGAGCCTCGCCGAGTTCGAGCGGTTTCTGGGCGGGCTCGAGGCGCTTTTACACCGCCTCGGGTCCCGCCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGGAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTTGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTCGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGTGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGAATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGTTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCGAGACTCCACGGCGGCCCGGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATTGTTACGGCACTCTTCCCGCCGGCAGCGGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAGGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCAATTCTGCGCGTGCGGGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTATCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGAGTGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCCGGGCTCAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTAGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACCAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGATGTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTACCTCGGCCTTGAACTGGATGGTCGGTGGAACTTCCGCGCTCACTTTGCGAAGTTGGGCCCTCGACTGATGGCGACGGCCGGCTCTTTGAGCCGGCTGCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGAAGGGCGCCCCAGCGAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACACACGCTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGTAG

Protein

MAGFRALSHQPTSSDGEVKKKIRGYLPLRGGESLRAVERSAARCPTVSGGGKHCHDEGGDSTGRVRDRVPTVRLERCESLISLYSARSSARGDASSGRETPALFVDSARQRTRRKRKSARQPASVPPSDSSEGEPTSAKYLALAEGPATAAASPATGFDKRASCGLDAASSAQSRAACREAHKRLATVGEVERLERSLTEVGPYDPLRRYGISQKIVSTVATKSSAGLKGDYVRALKSAASSMEEVMVEVLERTKDGETEGLRKSVDLLHARLAQISAENGHLRAENGQMKVDLAELRTLVNDLIEKQCNSAPVPTPLETEEANEAEELRRQLLIQEARSSNVERARPPLAHEAKSSAPTYTCGCGGAGTHGPYKKTGVRSCPAPACESRARQEPDKEEGRRQRRQTGTDPPARPLPPAPANMDEAWTTVVRRGPKKVAAPPAPRPKPTPAAAAPRQEGRAEPRGRTGRRRPRAPRSAAVVVELLPAGKEKGITYHEVMTQARGGVNVDALGVEGGIKVRQTANGARLIECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRATYSGTRTAWARCPVVTANLLATPPQGRPSDSPGWLRVGWVVAHVQLQESRPWRCLRCFGTGHGLAKCPSTVDRSDLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKNKKKERPAAIRAAGESVPAAAPDEPQGGTDEGAMDVAPSLAEFERFLGGLEALLHRLGSRPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIATGLCLLNRGTVATCVRWNGESHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDCFRGTMANICDAAMPRVGPEHHVGVRSGGRPRSRDSTAARLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIVTALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGVMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALMFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFAKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGKGAPAKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTIS

Uniprot

J9KNS1 J9JWJ3

EMBL

ABLF02018808 ABLF02013358 ABLF02013361 ABLF02054869

Proteomes

UP000007819

Pfam

PF14529 Exo_endo_phos_2 + More
PF00078 RVT_1

Interpro

IPR000477   RT_dom        + More
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase

SUPFAM

SSF57756 SSF57756 + More
SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

J9KNS1 J9JWJ3

PDB

1WDU E-value=3.69033e-08, Score=144

KEGG

105842677 no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like

GO

GO:0008270 GO:0003676 GO:0003700 GO:0043565 GO:0005634 GO:0005524 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

1624

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.45018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1624

Pi

14.460474

Theta

148.741946

Tajima's D

-1.512945

CLR

1439.767789

CSRT

0.0585970701464927

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree