SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14487  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000069
Annotation
PREDICTED:_RNA_polymerase-associated_protein_Rtf1-like_isoform_X1_[Plutella_xylostella]
Location
Bomo_Chr24(-):7733214-7762619      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.669
 

Sequence

CDS
ATGGCCAAAAGAAAGAATAAACCGTTGATCGATTCTGATTCAAGCAGCGAATGCTCAGATTTGGAGTCACAACTGCTAAATCTCGCGAAAAAGAAGAAGAAAACAGATGTTCAACCCCCACCTAAGCCAAGGAGCAGATCCTCAGGGAAGTCATCCGACAGTGATTCAGATGATGATAATGACGAAAAACCTAATCACTCTAAGTCATCAGCATCATCGTCTGATTCTGATTCAGACAGTGACGCCAAAAGCAATGCATCCAAGAGCAGAGACTCGCCTCCGAAGCGGGCTTCCTCAGATGAAGAGTCGAAGGAGACAGAGCCAAAGAGATCTGAAACCAGGAAGAGCATTGAAAGTGCTGGATCGGAGAAGAAAAAAGATACCTTCAGTGAGCCAGAGGAAGGTGAAGTATCTTCACATTCGTCAGACAATGACTCAGTTGACTCTGAAGAGGAATTTGATGATGGGTATGATGAAAATTTAATGGGTGATGAAGAGGATAGAGCTCGTCTGGCTGCCATGTCAGAGAAAGAGAGAGAACAAGAGATTTTCAAACGTATAGAGAGAAGAGATTTAATGAAAACTAGATGGGAGATAGAACGTAAGCTACGCTTAGCGAGACGTTCTGCGGCTGAACGATCTGCATCTCCGGGAGAAATAGCTAGAAGGAGAGAGGCCAGGAAACGGAGGAGAGCCATGCGTGAACAGAGATTGAAGGAGAGGGAGAAAGAGAAAGAAAGACAGCGGCAAGCTGCTGAAGCAGAAGCAGAGAAAGAGAAGGAAAAAGAAAAAGAGCCCCAGAATGAACCAGAAGAGACGCCTCCTAGTCCTGGAGAAATACTGGACGAAAGTAAAGATATGGAGCCCTCAGAGAGATCAGCCTCTCCGCTGTTTGGCTGTAAAACAGAACGGAAACGCGCCGTGGATGACAAACGACAGAATGCTATGGCCGCGTTGCGAGCTCAAAGGGCTTCGAGAGTGCAAAGGGCGCCGGCTGACGCTGAAGCAGATTTAATAGGCGGCTCGAGCAAACAGACTGTGAAACTTAAAGCTTCAGATATTTATTCGGACGACTCCGGCTCTGAATCTGAAGATAATAAATCAGCTCGGAGAAGTTCCACGAGCTCATCCTCGTCCGGTGCAGAAGAAGAAGAGAGAGAGAAGAAACGACAAGAAGTGGAAGTCAGATACGCCGACACCAGGGAACAAATCAACAAACTGCGCTTAAGCAGATTCAAACTGGAAAGACTGGTGCACTTGCCGTTTTTCACTCGTGTAGTCACAGGGTGTTTCGTCAGGATCGGCATAGGGAATAACAACGGGAACCCTGTATACAGGGTGGCAGAGATCATAGACGTGCACGAAACTGGGAAGGTTTATAACTTGGGCAACACAAGAACAAATAAAGGCTTCAAATTGAGGCACGGAACTCAGGATAGAGCGTTTAGATTGGAATTCGTCAGTAATCAGGAATTCACGGACGGAGAATTTCACAAATGGTACAAAGCTTTAAAGGATGCGAACAAGAAGCCGCCCACCATGGACTTCGTCAGGAATAAGATCAACGAAGTCAAGCAGGCGCTCATGTACGAATTTAAGGAAGAAGATATTGAGAAAATAGTGGCAGAGAAGGAGAGGTTCAGATCTCACCCGACCAACTATGCGATGAAAAAGACGCAGCTTATGAAAGAGAGGGACGTGGCACAACTGAGGGGTGACGATGAACTGGTGATGGACCTAAACTCCAAGATCGAAGAGTTGGAGGAGCGTGCCAACCAGCTCGACAAGACGCGGACCTCGTCCATACAGAGCATCTCGTACATCAACAACAGGAACCGGAAGCTGAACGTTGAAACCGCCGAGAAAGCTATCATGGAGGAGGTCAAAGCGAATAAAGGAAAGAAAACAGACGACCCGTTCACGAGGCGACACACCAAGCCCGTCATGAACTTTAAATCACAAAGCAGCAGGAGTCAGGAGCTAATAAGCAACCAGCAGGCCGCAGCTGTGGAAGCCCAGATACAAATTGAGGAAGAGAGGATGGAGAAGGAGAAAATTGAGAGAGATAGACTTGAAAACCACGAGGAGGCGAAGAGGTCCCGCGGCGAGCACCCCACGTCCAGCGACACCAGCCTGTACTCGCTGCACGACTTCGAAATTAACATAGACCTAGATCTACCTGCAGCAAAATCCGTGTCGAGCCAGCCGAAGCAGGTGACGACGAAGGTCAAGGAGACGGGGCCCAAGCGCTCGCTCAACCTCGAGGAGTACAAGAAGAGGCACGGGCTCATTTGA
Protein
MAKRKNKPLIDSDSSSECSDLESQLLNLAKKKKKTDVQPPPKPRSRSSGKSSDSDSDDDNDEKPNHSKSSASSSDSDSDSDAKSNASKSRDSPPKRASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGEVSSHSSDNDSVDSEEEFDDGYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIERKLRLARRSAAERSASPGEIARRREARKRRRAMREQRLKEREKEKERQRQAAEAEAEKEKEKEKEPQNEPEETPPSPGEILDESKDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSARRSSTSSSSSGAEEEEREKKRQEVEVRYADTREQINKLRLSRFKLERLVHLPFFTRVVTGCFVRIGIGNNNGNPVYRVAEIIDVHETGKVYNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKANKGKKTDDPFTRRHTKPVMNFKSQSSRSQELISNQQAAAVEAQIQIEEERMEKEKIERDRLENHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSLNLEEYKKRHGLI

Summary

Uniprot
H9IS43   A0A3S2NQP9   A0A212EJV4   A0A2H1WBR0  
Pubmed
19121390    22118469   
EMBL
BABH01024301    BABH01024302    BABH01024303    BABH01024304    BABH01024305    BABH01024306    + More
RSAL01000009    RVE53785.1    AGBW02014396    OWR41750.1    ODYU01007603    SOQ50525.1   
Proteomes
UP000005204    UP000283053    UP000007151   
PRIDE
H9IS43   
Pfam
PF03126   Plus-3
Interpro
IPR036128   Plus3-like_sf        + More
IPR004343   Plus-3_dom       
SUPFAM
SSF159042   SSF159042       
Gene 3D
2.170.260.30    
ProteinModelPortal
H9IS43   A0A3S2NQP9   A0A212EJV4   A0A2H1WBR0  
PDB
2BZE     E-value=2.88778e-39,     Score=409

Ontologies

KEGG
101743014    K15178 RNA polymerase-associated protein RTF1 | (RefSeq) RNA polymerase-associated protein Rtf1
GO
GO:0006368   GO:0016593   GO:0003677   GO:0016570   GO:0006355   GO:0043565   GO:0008168   GO:0016020   GO:0005524   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Topology

Length:
764
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02816
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00075
outside
1  -  764
 
 

Population Genetic Test Statistics

Pi
399.177333
Theta
201.131788
Tajima's D
1.421083
CLR
1.450281
CSRT
0.772511374431278
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 TRTSSIQSISYINNRNR 100.00 0.017
28556443 IVAEKER 100.00 0.017
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