Gene

KWMTBOMO14477  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000154

Annotation

PREDICTED:_WD_repeat-containing_protein_43_[Bombyx_mori]

Location

Bomo_Chr24(+):7537479-7548883      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.245

CDS

ATGGCAGAAGCTATGTTTTCCGAAGACGGGAAATACTATTCGACAATTACTAAAGATGGCAGACTTAAGATATGGGATACGGAGACCAACGTACTCAAACAGGAATACACACCTGATCTTCACTTAACATCACCTCCTACTTGCCTACAGTGGACAACCGTCAGTCAATCAGTTTCGAACTTAAAAGGGAACCGAAGCAATTCAAATGCGAGTACAAACGAAAATGAGTCCCAATGCATAGTATTAGGCACTACAAATGGTAAACTGTTAATATACTCAATAAGTCAAGCGAAAATAATAAATGTTTGGGTGCCCGCCAAACATTTTAGCGCTAAAGTGACCGCCCTGGATTGGAGTAGAAAATACGGTTTGTACAGCTGTACTAAGGACAGTAGAGTCTATGAGTGGAACATAGAAGATGGTTCAGTTAAACAAACCTATAATATTTCTATTGAAAATAATACGAAGCAGGGGAGCAATATAAACGCCATAAAAATTATACCACACAATCAGCACAAGAAATCCCGGTACTTAGTAACTGCATCATATCAGCTCAGTCTTTGGAGGCTTCACAATAAAGATGTGACATTGATCAAGAGCTTAGGATACAGTACTTCGCAGACCGCTATTCTGTCACTTGTCAGTTTCAATGACACATATTACATTGTTGAAGGGTCAGAGAATGAACGTCTTCTATCGTTCTGGGACGTGACTGTTACTGATGAAAGCACTCAAAACAACAACGATGAGCCGACACCAAACAAACGTCACAAGAGAAAGCACAGTGCGGTGCCGGTCCAACCCACGCCCATGTACAGCTTCGTGCTCGAGGACGCACCGAGAGCAATTGACTCAGTACTCAGAGAAGGTGATGGGGTCCAACTGAATATTGTCGCTGCTACGAGAAGCGGAGTTGTGCATTACTATCAGCATACTTTAAATGGGTCATCAACAAAACCAATAAAGCCATCATTAACTATACAAACAACGACAGCTGATGCCAAACCTCTACCGCTACAGTGCTGTCGGCTTCAGCAGGATGGAAACATCAATCTCGGATACCTCAATGATAGAGGACTGGTTTTTGAGAAGATCACACCGGACTTAAAAACGAAAACTCAAGTACTGATCAGGGGCGACGTTAAAGAGAAAAAGAAAACCAAACAAAACGATAATTCACTGTTGAGAACGGAATTTCATAGTTCTGAGGCAACGTACCTGGACAACACCGCGGTGGCACCCAGGAAACGAACGGCGCCGGGAGCGAACCCTAGTATCGAGGTCCCTATGGAAGCTCGCCTCCAGAACTTGGCTCTAGACGTGAACAGCAAGAGTAACGTTGCGGTCAATGAAAACCTCACCAAACTATTAATCCAGGGACTGCACTCGAAGGATAAGGATATCATCCTGACGGTCCTTCAGAAGAATGATCCCCGTGTGGCCAGGGTCACAGTCTCCAATCTGCCTCCGCAATATGTATTTATGCTTCTAGAACAACTAACCGAAATGTCCTTGAAGAAAACTAGCCAGTGCGCGGCGGCGTGCGTGTGGGCGGGCGCGGCGCTGCGGGGGGCGGGCGGAGCGTTGGGGGGAGGGGGCGGAGGCGCGCTCGCCGCGTTACTCGCCGCACTCACCAACAGACGGTCACACCTATGCCAGCTGCTGAACCTGAAGGGCCGGCTGGAGCTGACGCTGACGCAGCGGCTGCTCGCGCTCGGAGCAGAGAAGCAAGACGAGCAAACTGCCGTACTTGATTATAATGACTCGTCAGACGAAGACAACGATGCGGACATGGAGCCCTCGCAGTCCGAGAGCGGCGCCTCCTGGGACGAGAGCGACGAACAACTCTCTGACGACGGAGATGTAGAAATAAGCGATGCAGAATAA

Protein

MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNLKGNRSNSNASTNENESQCIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYIVEGSENERLLSFWDVTVTDESTQNNNDEPTPNKRHKRKHSAVPVQPTPMYSFVLEDAPRAIDSVLREGDGVQLNIVAATRSGVVHYYQHTLNGSSTKPIKPSLTIQTTTADAKPLPLQCCRLQQDGNINLGYLNDRGLVFEKITPDLKTKTQVLIRGDVKEKKKTKQNDNSLLRTEFHSSEATYLDNTAVAPRKRTAPGANPSIEVPMEARLQNLALDVNSKSNVAVNENLTKLLIQGLHSKDKDIILTVLQKNDPRVARVTVSNLPPQYVFMLLEQLTEMSLKKTSQCAAACVWAGAALRGAGGALGGGGGGALAALLAALTNRRSHLCQLLNLKGRLELTLTQRLLALGAEKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE

Uniprot

H9ISC7   A0A2A4J052   S4PTE4   A0A0N0P9N1   A0A212F7N3   A0A3S2M8D6   + More
A0A2H1WKA9   A0A194RNX0   A0A139WKH9   D6WFF9   A0A1W4X340   A0A2J7R9B1   A0A067R5B4   A0A2J7R9A9   U4TZU8   N6TSG2   A0A0C9R8W9   A0A1Y1KTT8   A0A1B6FF45   A0A336KSR8   A0A336MNZ2   A0A2P8XK26   E2AC95   A0A1B6JUS4   Q17E26   A0A232F247   A0A151X574   K7ITP8   A0A0P4VQM3   A0A026WZF6   T1HZ17   A0A1B6LXA7   A0A182JME9   B4JVE6   A0A0A9XNX6   A0A084WNI3   A0A182FPL9   A0A0K8UQJ5   A0A0K8UG52   A0A158NAJ6   A0A0V0G9E6   A0A151I5U5   A0A195CM03   A0A224X9Y5   A0A0K8VIF8   A0A0K8VSC6   A0A0L7REA8   A0A195EWH8   U5ETI9   B4KTQ6   A0A0A1X055   A0A1I8N3C4   A0A069DZA9   A0A195DQK7   A0A023EWX9   A0A0L0CMD9   A0A154P5U4   E0VJQ3   W8C9W4   A0A182YAC8   A0A182RLT8   A0A0T6B6L7   A0A182MFS4   A0A1B0CUZ9   A0A088AJI6   B4MQV8   A0A0M8ZMP4   A0A2R7VTB3   A0A1I8PJP8   A0A182WE70   T1IMG5   B3MFD1   A0A182JZE1   A0A1Q3EY68   A0A1W4UKM3   A0A1A9V1V0   A0A2A3E6M4   A0A1B0AGB0   A0A1B6CYA1   A0A0M4EI14   A0A1B6C6T4   A0A087T7B3   A0A0Q9WE59   B4LNN5   A0A1J1HN27   A0A1A9XME4   A0A1B0B1Y5   A0A182PM07   A0A182QFU3   Q28Y78   B4HSA9   A0A182UEB4   B4GCT9   B3N848   A0A1L8DNG6   A0A0J9R8D2   A0A182I605  

Pubmed

19121390    23622113    26354079    22118469    18362917    19820115    + More
24845553    23537049    28004739    29403074    20798317    17510324    28648823    20075255    27129103    24508170    30249741    17994087    25401762    26823975    24438588    21347285    25830018    25315136    26334808    25474469    26108605    20566863    24495485    25244985    15632085    22936249   

EMBL

BABH01024287    BABH01024288    NWSH01004433    PCG65126.1    GAIX01012183    JAA80377.1    + More
KQ459286    KPJ02027.1    AGBW02009857    OWR49740.1    RSAL01000009    RVE53794.1    ODYU01009211    SOQ53478.1    KQ460118    KPJ17716.1    KQ971327    KYB28440.1    EFA00915.1    NEVH01006600    PNF37413.1    KK852954    KDR13291.1    PNF37415.1    KB629998    ERL83325.1    APGK01053845    KB741237    ENN72190.1    GBYB01009262    JAG79029.1    GEZM01078225    JAV62826.1    GECZ01020959    JAS48810.1    UFQS01000957    UFQT01000957    SSX07948.1    SSX28182.1    UFQT01001312    SSX29967.1    PYGN01001892    PSN32314.1    GL438484    EFN68941.1    GECU01004780    JAT02927.1    CH477287    EAT44712.1    NNAY01001265    OXU24563.1    KQ982519    KYQ55552.1    GDKW01001823    JAI54772.1    KK107077    QOIP01000010    EZA60529.1    RLU17356.1    ACPB03007549    GEBQ01011670    JAT28307.1    AXCP01006767    CH916375    EDV98414.1    GBHO01021980    GBRD01016270    GDHC01003433    JAG21624.1    JAG49556.1    JAQ15196.1    ATLV01024612    KE525353    KFB51777.1    GDHF01033846    GDHF01023551    JAI18468.1    JAI28763.1    GDHF01026675    GDHF01014274    JAI25639.1    JAI38040.1    ADTU01010342    GECL01002141    JAP03983.1    KQ976413    KYM90393.1    KQ977642    KYN01104.1    GFTR01007249    JAW09177.1    GDHF01013638    GDHF01003704    JAI38676.1    JAI48610.1    GDHF01026651    GDHF01010532    JAI25663.1    JAI41782.1    KQ414612    KOC69160.1    KQ981954    KYN32239.1    GANO01001897    JAB57974.1    CH933808    EDW09639.1    GBXI01010259    JAD04033.1    GBGD01000960    JAC87929.1    KQ980612    KYN15131.1    GBBI01005034    JAC13678.1    JRES01000195    KNC33431.1    KQ434823    KZC07222.1    DS235226    EEB13609.1    GAMC01006296    JAC00260.1    LJIG01009611    KRT82733.1    AXCM01002681    AJWK01029924    AJWK01029925    AJWK01029926    CH963849    EDW74497.1    KQ436240    KOX67355.1    KK854074    PTY10754.1    JH431047    CH902619    EDV35605.1    GFDL01014792    JAV20253.1    KZ288349    PBC27397.1    GEDC01019055    JAS18243.1    CP012524    ALC40642.1    GEDC01028087    JAS09211.1    KK113775    KFM61002.1    CH940648    KRF79246.1    EDW60105.2    CVRI01000006    CRK87870.1    JXJN01007365    AXCN02001819    CM000071    EAL26087.2    CH480816    EDW47004.1    CH479181    EDW32502.1    CH954177    EDV59461.1    GFDF01006179    JAV07905.1    CM002911    KMY92367.1    APCN01003541   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000283053    UP000053240    + More
UP000007266    UP000192223    UP000235965    UP000027135    UP000030742    UP000019118    UP000245037    UP000000311    UP000008820    UP000215335    UP000075809    UP000002358    UP000053097    UP000279307    UP000015103    UP000075880    UP000001070    UP000030765    UP000069272    UP000005205    UP000078540    UP000078542    UP000053825    UP000078541    UP000009192    UP000095301    UP000078492    UP000037069    UP000076502    UP000009046    UP000076408    UP000075900    UP000075883    UP000092461    UP000005203    UP000007798    UP000053105    UP000095300    UP000075920    UP000007801    UP000075881    UP000192221    UP000078200    UP000242457    UP000092445    UP000092553    UP000054359    UP000008792    UP000183832    UP000092443    UP000092460    UP000075885    UP000075886    UP000001819    UP000001292    UP000075902    UP000008744    UP000008711    UP000075840   

PRIDE

H9ISC7   

Pfam

PF04003   Utp12        + More
PF12894   ANAPC4_WD40
PF00400   WD40
PF00432   Prenyltrans

Interpro

IPR017986   WD40_repeat_dom        + More
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR007148   SSU_processome_Utp12       
IPR024977   Apc4_WD40_dom       
IPR019775   WD40_repeat_CS       
IPR016024   ARM-type_fold       
IPR001330   PFTB_repeat       
IPR026873   Ptb1       
IPR008930   Terpenoid_cyclase/PrenylTrfase       

SUPFAM

SSF50978   SSF50978        + More
SSF48371   SSF48371       
SSF48239   SSF48239       

Gene 3D

2.130.10.10    

CDD

cd02894  GGTase-II

ProteinModelPortal

H9ISC7   A0A2A4J052   S4PTE4   A0A0N0P9N1   A0A212F7N3   A0A3S2M8D6   + More
A0A2H1WKA9   A0A194RNX0   A0A139WKH9   D6WFF9   A0A1W4X340   A0A2J7R9B1   A0A067R5B4   A0A2J7R9A9   U4TZU8   N6TSG2   A0A0C9R8W9   A0A1Y1KTT8   A0A1B6FF45   A0A336KSR8   A0A336MNZ2   A0A2P8XK26   E2AC95   A0A1B6JUS4   Q17E26   A0A232F247   A0A151X574   K7ITP8   A0A0P4VQM3   A0A026WZF6   T1HZ17   A0A1B6LXA7   A0A182JME9   B4JVE6   A0A0A9XNX6   A0A084WNI3   A0A182FPL9   A0A0K8UQJ5   A0A0K8UG52   A0A158NAJ6   A0A0V0G9E6   A0A151I5U5   A0A195CM03   A0A224X9Y5   A0A0K8VIF8   A0A0K8VSC6   A0A0L7REA8   A0A195EWH8   U5ETI9   B4KTQ6   A0A0A1X055   A0A1I8N3C4   A0A069DZA9   A0A195DQK7   A0A023EWX9   A0A0L0CMD9   A0A154P5U4   E0VJQ3   W8C9W4   A0A182YAC8   A0A182RLT8   A0A0T6B6L7   A0A182MFS4   A0A1B0CUZ9   A0A088AJI6   B4MQV8   A0A0M8ZMP4   A0A2R7VTB3   A0A1I8PJP8   A0A182WE70   T1IMG5   B3MFD1   A0A182JZE1   A0A1Q3EY68   A0A1W4UKM3   A0A1A9V1V0   A0A2A3E6M4   A0A1B0AGB0   A0A1B6CYA1   A0A0M4EI14   A0A1B6C6T4   A0A087T7B3   A0A0Q9WE59   B4LNN5   A0A1J1HN27   A0A1A9XME4   A0A1B0B1Y5   A0A182PM07   A0A182QFU3   Q28Y78   B4HSA9   A0A182UEB4   B4GCT9   B3N848   A0A1L8DNG6   A0A0J9R8D2   A0A182I605  

PDB

5WLC     E-value=0.0545728,     Score=87

KEGG

101742143    K14546 U3 small nucleolar RNA-associated protein 5 | (RefSeq) WD repeat-containing protein 43

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0004663   GO:0018344   GO:0005515   GO:0006468   GO:0004713   GO:0016020   GO:0005524   GO:0005507   GO:0016491   GO:0015930  

Length:

628

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.27801

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00077

outside

1  -  628

 

 

Pi

321.385437

Theta

162.322553

Tajima's D

3.268519

CLR

0

CSRT

0.989000549972501

Interpretation

Uncertain