SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14472
Pre Gene Modal
BGIBMGA000078
Annotation
PREDICTED:_transmembrane_channel-like_protein_7_[Bombyx_mori]
Full name
Transmembrane channel-like protein      
Location in the cell
PlasmaMembrane   Reliability : 4.937
 

Sequence

CDS
ATGTCAGGGGGTAACTCTAAGAACAAGGCGAAATCCAAACGCCATGAAGGTTGGGAGGAAGCCGGCGGGGAGTTCTACCAGGAACTCTACCCCGGGGGGGAACAGGAGCTGTTTGATAACCTCCAGAGAGCTGATGCAGCGAAACTGGCGACGCTACTACCATCAAAACAGGCTAGGAACACGACGACGGTCAAACGCGCCAGATCCCAGACTGATCGGCGCCAATCTACCTTCGCTAGGACCATGCAGAGCCGGGACATACATCTCTCGATGTTGCCAGACTTATCAGAAAATCTATCGAACGAAGAACGCTCGTGGGAGGAGATAATGCAGATAAAAGCGCTACCTGTCCCGATGAGTCAGAAGATCGAGCTTAAAGCTCGATTGCAGAACGCTACGAAACTTCGCCTCCAAGGTTTCGAGCAACTCCACTGGAGGCAGAGGAAGGTGTGGCACCGTTTCCGTATAGGCTGCACTGAGACGTTTAGCAAGCTGGAGCTCTGGCAGACCCCCATGCGTGAAATAGAAGGAAAATTCGGAACGGGAGTCGTCTCTTATTTCCTGTTCTTGAGGTGGCTCTTCCTGTTAAACTTCACAATATCGATACTGGTCATCGTGTTCCTGATCCTACCAAAGACATTGTTGACTGAGAGGGTTTACGAATGCGACGAGACGGAAGCGAATTCAACAGTTTGCTGTTCTATAGCGTATTTTGAGAAGAACACGACGAATTCAAATATATTTTTAGACGTTATCCAGGGCACTGGCTGGATGGAGAGAACCATACTCTTCTACGGAGTTTACACAGATCAAATATACACGTACTACGTAAATAGTTTATACCATACGAAACTGTTCTACAATATGCCAATGGCTTACATTTTGGTGCCGATTTCTTGGACTTTATTGTCCCTGATCGCGATCGTGAAGACGGCCGCCAGGGGCTTCAAGCAGAAGCTAATCGAAAGCGAGGGTCAGTTCTACAAGTACTGCAACCTCGTTTTTGGCGGTTGGGATTTTTGCATACACAACGACAGATCGGCGAGAATCAAACACCAAGCTCTGTACAATGAGATCAAGGGCTGCATCGAAGAGGAGAGATTCAAAGAAGAGAAACAGTCACGCAGCCGGGAGAGTCAGATATTGATGCACCTAAAAAGATTGTTTATTAACCTGATCGTGTTTGTGATACTCATAGCGTCCGGTTTTCTAATATACGTAGCCTTCAACTTCTCGACGGAGAGACTCAACGAAAGCATAGGATCTAACGAGAATCGAACCAGGACGATGCCGATAGTGTACACTACGATGTCTTTCAATCAATTGGAGAACGTACTAATGGAGTTTTTGCCGTTTATTTGCATTGTCGTACTGAATCTTATCATACCCGAGATTTTTAGTTACATGATCAGATACGAAGGCTACATGCCGCCACATGTTATCATTATAACGCTCCTAAGGACTGTGTTACTGAGGCTATCCTCGTTAGGCGTATTGTTAAGTCAAATCTATTTGTATATATCGACGAATGGCATCGTGTGCGCGAAGCATAACACGGATACAACGAAGTTAGAATGCTGGGAGACATACGTCGGTCAGCAGTTCTACAAGTTGATCTTGACCGATTTCGCCGTTCAATTCGTGACCACGTTCCTGATAAATTTGCCTAGGGCGTTTATGGCTCGTCACACGCGGAGCCGCTGCTTGAAGATGTTCGGCGAACAGGAATTCTATTTGCCTAAACACGTATTGGACATTGTTTACGTGCAGACCATAATTTGGATGGGTTCGTTCTTCTGTCCCTTTCTACCCATTATAGGATCTATGTTCTATTTCATGATATTCTATATAAAAAAGTTCACTTGCCTCGTAAACTGTACGCCCTCGCCGGTCGTGTATAAGGCGTCCAAATCGAAATCACTCTTCATGTCGGTTCTATTGCTCGGTTTCGTCATATCGATTCTGCCGGTAGCGTATTCGGTGGCGGAAATCTTGCCGTCTATAAACTGCGGTCCTTATCGAGGCTACACCACCGTGTGGGAATTCGTCATACAAACATTCAACAACTTTCCGTCGGTTATTAGAGAGGTCATATTCTTGTTAAGCACTGCAACGTTCGCGGTGCCGGCTTTCGCTGTGACATTATTCTTCTTGTATTATTACTGGGCCGTCGCGACAGCCAATAGGCACATGGTGGCGGTCCTTAAGAACCAACTGGTCTTAGAAGGCCACGATAAACAGTTTCTGTTGAACAGACTGAGCGCGTTTATACGGCAGCATCAGAAGAGGTGCGACAGAAGAAATAGGCCCAGTTTTGCGGACGATGACTCCTCTATAAGACAGAGTTCTAGATAG
Protein
MSGGNSKNKAKSKRHEGWEEAGGEFYQELYPGGEQELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATKLRLQGFEQLHWRQRKVWHRFRIGCTETFSKLELWQTPMREIEGKFGTGVVSYFLFLRWLFLLNFTISILVIVFLILPKTLLTERVYECDETEANSTVCCSIAYFEKNTTNSNIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTLLSLIAIVKTAARGFKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEEERFKEEKQSRSRESQILMHLKRLFINLIVFVILIASGFLIYVAFNFSTERLNESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHVIIITLLRTVLLRLSSLGVLLSQIYLYISTNGIVCAKHNTDTTKLECWETYVGQQFYKLILTDFAVQFVTTFLINLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIWMGSFFCPFLPIIGSMFYFMIFYIKKFTCLVNCTPSPVVYKASKSKSLFMSVLLLGFVISILPVAYSVAEILPSINCGPYRGYTTVWEFVIQTFNNFPSVIREVIFLLSTATFAVPAFAVTLFFLYYYWAVATANRHMVAVLKNQLVLEGHDKQFLLNRLSAFIRQHQKRCDRRNRPSFADDDSSIRQSSR

Summary

Similarity
Belongs to the TMC family.
EMBL
ODYU01010089    SOQ54946.1    RSAL01000009    RVE53797.1    NHMN01023779    PZC87381.1    + More
BABH01024272    BABH01024273    AGBW02008275    OWR53853.1    NWSH01002714    PCG67633.1    JTDY01002102    KOB72114.1    GDQN01007485    JAT83569.1    HF586479    CCQ71377.1    GBYB01007065    JAG76832.1    GEZM01067948    JAV67310.1    KK107638    QOIP01000004    EZA48390.1    RLU23213.1    AJVK01015212    AJVK01015213    NEVH01025648    PNF15216.1    CH477204    EAT47970.1    GL434492    EFN74855.1    GL447247    EFN86760.1    KK853149    KDR10638.1    KZ288324    PBC28075.1    GFDF01009112    JAV04972.1    GEDC01009866    JAS27432.1    LBMM01001902    KMQ95578.1    KQ971328    EFA00942.1    LJIG01016080    KRT81675.1    AAAB01008986    APGK01034495    KB740914    KB632005    ENN78341.1    ERL87924.1    KQ976500    KYM83245.1    ADTU01011227    DS235874    EEB19691.1    KQ980581    KYN15334.1    KQ982981    KYQ48545.1    PNF15217.1    KK856629    PTY26139.1    PYGN01000252    PSN50086.1    GL761864    EFZ22606.1    KQ981673    KYN38304.1    KQ978219    KYM96397.1    GECU01016368    JAS91338.1    GDHF01011109    JAI41205.1    GL888932    EGI57248.1    GAMC01001548    JAC05008.1    GEBQ01017333    JAT22644.1    GDHF01024594    JAI27720.1    ACPB03006691    GFDF01009594    JAV04490.1    GAMC01001547    JAC05009.1    GFXV01006817    MBW18622.1    ABLF02035184    AJWK01011608    GDRN01068408    JAI64196.1    GDRN01068409    GDRN01068407    JAI64195.1    GGMR01011189    MBY23808.1    DS231920    EDS26438.1    AY263177    AAP78792.1    EAA00457.3    CAQQ02064822    CAQQ02064823    CAQQ02064824    CAQQ02064825    CAQQ02064826    CAQQ02064827    GG666561    EEN55303.1    ATLV01023914    KE525347    KFB49906.1    GFPF01012777    MAA23923.1    GFPF01012776    MAA23922.1    GFPF01012778    MAA23924.1    GEDV01001473    JAP87084.1    AXCM01007794    APCN01002444    CM004483    OCT61504.1    KB202619    ESO89008.1    HAEJ01015682    SBS56139.1    HAED01007444    SBQ93656.1    HAEC01005558    SBQ73635.1    HAEB01014451    SBQ60978.1    GEFH01000950    JAP67631.1    HAEH01015291    SBS02364.1    HADZ01011008    SBP74949.1   
Pfam
PF07810   TMC        + More
PF12248   Methyltransf_FA
Interpro
IPR012496   TMC_dom        + More
IPR038900   TMC       
IPR022041   Methyltransf_FA       

Ontologies

Topology

Subcellular location
Membrane  
Length:
784
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
196.57592
Exp number, first 60 AAs:
0
Total prob of N-in:
0.76163
inside
1  -  187
TMhelix
188  -  210
outside
211  -  286
TMhelix
287  -  309
inside
310  -  386
TMhelix
387  -  409
outside
410  -  445
TMhelix
446  -  468
inside
469  -  488
TMhelix
489  -  508
outside
509  -  591
TMhelix
592  -  614
inside
615  -  639
TMhelix
640  -  662
outside
663  -  696
TMhelix
697  -  719
inside
720  -  784
 
 

Population Genetic Test Statistics

Pi
253.959441
Theta
167.11104
Tajima's D
1.06488
CLR
0.12158
CSRT
0.67621618919054
Interpretation
Uncertain
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