SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14469
Pre Gene Modal
BGIBMGA000079
Annotation
PREDICTED:_protein_enabled_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.484
 

Sequence

CDS
ATGCGGCGCTCAAAAATGAACATCAATCCGGATCTCGGTGATTTAGAGGAGATGTTAGCTCACGTCCAAACTCAACTGGAACAGGAGATCGATTTGGAGCAGAAATCGAAAATGCCTTCGATAACCAGCGTCCAAGAATCACCGAAGTCAGTGAAGAGGAGTACGTCTTTCAATCGTTCCGATTGCGAGCTCCGTAGGGCTCCTAAGCCGCCTATCCACAGTAATTCTATTACGAACCACCATGGACCCTGCGATGGCAGCGAGGAGTACAGTCAACCTATCACGAATAACCTTCGAGGCTCCCAAACCAGTCTCAAATATGATGAGATGGGTTCCAGGATATCGTTTCAGTCTTTCCGGTCAGAGCCGGTACAAAGGCACTCCGTTCTTAGTTTACCCGACAAAAGAGGATCGACTTCATCTTTGAACGGCCGAGCTAAAACTGCCACGCTGCCCAGGGGATACGGGTCGACGAAGGAGTCCAATTGGGACGAATATTGGGCCAATGAACAGTCAATAAGCAGCGCCCGCGCCTCCGTCATGGTGTACGACGATGGGCAGAAGCGCTGGGTACCTTCAGGCAGCTCGTCCGGCCTGTCCAAGGTCCACATCTATCATCACACCCAGCACAATACCTTCAGGGTGGTGGGCAGAAAACTTAATGATCACGAGGTGGTGATAAACTGCGGAATAGTGCGAGGTCTAAAGTACAACCAGGCGACCGCCACGTTTCACCAGTGGCGCGACGCTAGACACGTTTACGGCCTCAACTTCTCCTGTAGAGAGGACGCGGATAGCTTCGCGAGGGCTATGATGCACACATTAGAGATACTAGCGAACAAGCCGAACGTGAACTCAGCGCCGCCGCCCCCTCAGGCCCTAAACCCGCCCGCCCCCTACAACGGCCACAACAACACGTACAACCACGACGAGGACATGGGGTACAGAACGATGACAAGAGAAGACGCAGCGATACTTCAACAGCAGCCCCAATACCACGCTGCGCAGCACCAGCCTCACCAGAACCACCAGCAATACCATCCGCCGAGCCAGTACCACGCGCCGCACCCACACCCGCATCAGGCGCAAGCAACGCCCCCTGCTCCGCCTCCTCATGGGGTTCACCACACGCTGCCTCATCAGCCAAGTCAACCGACACCAGGACATCACCGCACTAACAGCGCTCCAATGGCCCCGAACATGTCCCTATCGGCGGCAGGTCCCCCCGCGCCCCCCGCACCGCCCCCCGTGCCCCCCCACCAGAACCTGGCGCCGACCAACAATGTGAGTATTCATTTTTTTGTGCAGCAAATATACTACGGGCCGAACAATTGTGTAGGGGGTCATTAG
Protein
MRRSKMNINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITNHHGPCDGSEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGRAKTATLPRGYGSTKESNWDEYWANEQSISSARASVMVYDDGQKRWVPSGSSSGLSKVHIYHHTQHNTFRVVGRKLNDHEVVINCGIVRGLKYNQATATFHQWRDARHVYGLNFSCREDADSFARAMMHTLEILANKPNVNSAPPPPQALNPPAPYNGHNNTYNHDEDMGYRTMTREDAAILQQQPQYHAAQHQPHQNHQQYHPPSQYHAPHPHPHQAQATPPAPPPHGVHHTLPHQPSQPTPGHHRTNSAPMAPNMSLSAAGPPAPPAPPPVPPHQNLAPTNNVSIHFFVQQIYYGPNNCVGGH

Summary

Pfam
PF08776   VASP_tetra        + More
PF00568   WH1
Interpro
IPR000697   WH1/EVH1_dom        + More
IPR014885   VASP_tetra       
IPR038023   VASP_sf       
IPR011993   PH-like_dom_sf       
SUPFAM
SSF118370   SSF118370       
Gene 3D
PDB
5NEG     E-value=1.5574e-43,     Score=444

Ontologies

GO

Topology

Length:
449
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00033
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01850
outside
1  -  449
 
 

Population Genetic Test Statistics

Pi
200.921488
Theta
150.650005
Tajima's D
1.468405
CLR
0.052455
CSRT
0.780710964451777
Interpretation
Uncertain
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