SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14461  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000140
Annotation
PREDICTED:_ribosomal_protein_S6_kinase_alpha-5_isoform_X1_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.878 Nuclear   Reliability : 1.685
 

Sequence

CDS
ATGGGCTTAGATAACTTTCATTTAATCGGCGAAAACGTGACAGTGAGCGAGAGGGTCACGTCCGTAGATACTGCTAGATCTTCGGTCGACACACCAAGCGTATTGCCCGACTTTAACATTCCTACACCTATGAACACACCGGTCAATGAGATTACGCCCGAAATTTTGCTGCCAATTTCAGAAACACCTAAAATCCCAACCGAGACCATTCGTAAAGCAGCTACCTTACTCAAACTATCGATAGTTAAGAAGGACGAGGACGATGTATTCGTGAAACCTTCGCCGATGACCGATGGCATGTCGCCGGCGAGAATGCTGCAATTCGAAATAGACGGAGCAAACAACGCGACCCCTACCATGAGAAGGGCCGTTGTGGACTTCGACTTCTTTAATAAGAATAAATTCGATGAATACTTCGAAGACACTCGACAGGACGTTAAAATTGCCTCGGAATGTAAAAATGAGGAGACGTTTAAAGAAACTGCAGTTATAACGAAGGCGAACACCGTGCGACACGAAATAGGCTATGGTAAGTAG
Protein
MGLDNFHLIGENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAATLLKLSIVKKDEDDVFVKPSPMTDGMSPARMLQFEIDGANNATPTMRRAVVDFDFFNKNKFDEYFEDTRQDVKIASECKNEETFKETAVITKANTVRHEIGYGK

Summary

Pfam
PF03914   CBF
Interpro
IPR016024   ARM-type_fold        + More
IPR040155   CEBPZ/Mak21-like       
IPR005612   CCAAT-binding_factor       
SUPFAM
SSF48371   SSF48371       

Ontologies

Topology

Length:
178
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01891
outside
1  -  178
 
 

Population Genetic Test Statistics

Pi
26.462151
Theta
19.447946
Tajima's D
1.033366
CLR
0.480978
CSRT
0.673816309184541
Interpretation
Uncertain
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