SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14455
Pre Gene Modal
BGIBMGA000083
Annotation
putative_cuticle_protein_CPH35_[Bombyx_mori]
Location
Bomo_Chr24(-):6862436-6868444      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.988
 

Sequence

CDS
ATGTCAACAGTCGCCGAGGACTCCTCTACTGCGGGACATTACTACGTAAAACTGCCTCAGGCAGAACAACGGGTTCGGTATACGGCAGACGACACCGGCTATCACGGCGCCGCGGCGTTGAACGCGAGCGACGACCACCACTCGCACACAGCCAACTTCGCCTTAGGGCAGACCGCTATAGATCTCAATAAACTGGATTATGGAGGGCCAACCACCACGATACAGCCAGCTAATCTAGTCTCGTCTAATACTCAGCCAATCGATATATTTCTCATCCAACAACAGTTCACATCTCCTTCCGCTCAAGAAAATAATTTACAGATATCGTCACCATCCAATATTCAATACTCCGCACCGTATATAACGCCATTTTACCAAATACAAACACAGCGTCCAAATGTCAATCAAAAGAACGCATCCAAAAATCCCAATGAAGAAGACTTAATTCAGGAAAAAACTGATGAAACTATTGTTACTCCCTTACCCATTCTCCAAGTGTTCAAAAACCATAAATGCAGTACCGAAAACCCTAATACTGATGTGGCTTCAGAGACAGTAGATGATAGCCTAAATAGTTCCAAAGATTTAATCGCGGATATTACATCCTATGAAATTCACAAGATCAACAACTTTGGTCTGAGGGACGAAGCTAAAAGACCACTTACGTACAGAGGGGCTGTGCATTTCAAAGTTGAAACACCCAGACCTAACGCTAGAAACGAAAGGTTTTATTATACAACTGATTATGCGCCGATTATATCTGAATCAAATAAGGTTAATATTACACAAGAAGGGATCAAAAAATTAGTGGCTTCCACACAGGACCTAATTAGCAACGAAGATCTTTTAAAAATCAACCACGCCGCAGAGAAACACGTAAATGATCTTTCCGAAGACATCATCAAACCTAAACCTAGATTTCATGCACAGACTAAATCTAGAAATCTTAAAATTGAGAATAGACCAACCGAAATCACTGTGAGAGCTAAAATAGAAAACATATTACGCGATATCGAAAACACGAGTGATAAATCTAAATCGAATATCATAGAAACAAATTCTAATGATTATAAATTTGCATCTCCTATCGTTGTTCCTGACAATACATACGCTGATTTCAAAGAGCAAATCGTGAATAACCTTGTTTCTACAATGGTACCGTACATCGCAGATGGCTATCAGATCGTTGATGTAAAAAGCGGATACAACAATACCAGTGACATTGATATTAGTCATGACACTGACGAGAATGTAGTAGATGTAACACCAAGACCGATTGGCCAGAACTATCTAGCACCAATCACCGTAGCTTTAAGACTGCTCAATGCAAACCAATCGGTGACACTTAACGCGGTGGATGATCACGAAGCTTCTGACAGCGAACAAATTAGTGAGACGGTCCAAAGTCCGAAACGTGAAAGAACCATTGTCGAAGTTCAAGAATCGTTACCGGTTGAAATAACGCACATAAATGACGTTGAGGTGCACGAGTACTTAGAGGAAGGTAAAAGCAACGATAAAGAACATTTAGAATTAGCTAAATCGCTCTACAACACTTATGAAAGTTCAGACAGTACAGAGAAGCAGGATTACGATTCCAAAGAGAATCTGGAACAAAGTGAAAATATGCAATCCGAGGTGCAAGTCAGACCGGACGAGGATAATGATAGAAGCGAGTCGATCGATTACTACAATAATTATGAGAATCAAAAAATAATACAACCAATTATTGTCGAAAAAGAGGTACCTGTAACTAAATTCGTTGATAGGTATATTGAAACACGAGTTCCATACCCGGAGGCCGTGCCGGTACCGGTTGATAGGCCAGTCCCAGTGGCGGTACCCTATGAAAAAATCGTAGAAAAACCTGTCGAGGTCACGAGGTACGTCGACAAACCGTACCCGGTTGAGGTACCGAGGCCTTACCCGGTCCAAGTCAAAGTACCGTATCCGGTCGAACAAAAGGTATACGTCGACAGACCTGTACACGTGCCATATTCGGTGGAAAAGGTAATTGAGAAACAAATCCTCCACCCGGTTCCCATACCGACTCCTGTAGGAATACCTTACGCAATTCAAATACCCGTAGAACACAAAATATTATACCCGATAACCGTCGAGAAACCAGTTCCAATACCTGTGGAAGTCGAAAAACCGGTACCGGTTGAAAAGGTTGTACACAAAGAGATACCAGTTCCGTACCCGGTTGAAAAACGCGTACCTTATCCGGTTCCGTATGAAACAAAAGTAGCTATACCTGTACCTATAGAGCATAGGGTGCCTGTAGAAAAAATTGTAGAAAAGCCTGTTACTGTAACTAAATACGTAGAGAAACCTGTACATATCGAAGTACCACGGCCGGTAGCTATACCGGTTCATATTCCACAACCATACCCGGTTGATAGAATTGTTGAAAAGAAAGTACCATACCCGGTTCCGGTGGATAGAATCGTGGAAAAGAAAATTCCAGTCAAAGTTCCGTATGCGGTCGAAAAGTATGTCGAGAAAATTGTCGAAAAACCGGTCGTGTTGACGAAGTACGTTGACAAACCTTATCCCGTGGAAAAGCGGGTTCCTTACCCGGTTGAGAAGATAGTAGAGAAACGGGTACCCTACGCTGTGCAAGTACCGTACGAGGTCAGAGTACCGTACCCGGTCGAAAAACCTGTTCACATACCCGCGTACCGCTACTACTCGGATGAGGAAGCGAGACACATTATCCACTACCAGAAGCCGGATCAACGTAATACACAAACGCAGTTATCACAAGCCCAAGCGTACGCGCGATATTTACAAAGTTTGAGTGATAAATACAGAAATAACCGAAACGTGCAATCAACTCTCTGGGGTAATCAATACGCATCTTCGTACCAATATTTTAATAAAACCGACAAACAGAGCGGTTTGAAAAATGCGCAAAACGTAGCTAACTATATCAAGTATTTACAACACACACAGAGTAAATCGTTAAATCATAATGGTTTGAATAGAAACCGGAGTGATTTTGTCGGATATCAACTCCGCGGGGCGGTGTTGCGCGCTCCTAAAACTTTGAAGATCGAATATGGAGGTTTCAAGCCTCCATTGGTTCCGAGTACTGAGGTAGACTTAGACGGGATACCAGTAAATAAACGGGACGATTAA
Protein
MSTVAEDSSTAGHYYVKLPQAEQRVRYTADDTGYHGAAALNASDDHHSHTANFALGQTAIDLNKLDYGGPTTTIQPANLVSSNTQPIDIFLIQQQFTSPSAQENNLQISSPSNIQYSAPYITPFYQIQTQRPNVNQKNASKNPNEEDLIQEKTDETIVTPLPILQVFKNHKCSTENPNTDVASETVDDSLNSSKDLIADITSYEIHKINNFGLRDEAKRPLTYRGAVHFKVETPRPNARNERFYYTTDYAPIISESNKVNITQEGIKKLVASTQDLISNEDLLKINHAAEKHVNDLSEDIIKPKPRFHAQTKSRNLKIENRPTEITVRAKIENILRDIENTSDKSKSNIIETNSNDYKFASPIVVPDNTYADFKEQIVNNLVSTMVPYIADGYQIVDVKSGYNNTSDIDISHDTDENVVDVTPRPIGQNYLAPITVALRLLNANQSVTLNAVDDHEASDSEQISETVQSPKRERTIVEVQESLPVEITHINDVEVHEYLEEGKSNDKEHLELAKSLYNTYESSDSTEKQDYDSKENLEQSENMQSEVQVRPDEDNDRSESIDYYNNYENQKIIQPIIVEKEVPVTKFVDRYIETRVPYPEAVPVPVDRPVPVAVPYEKIVEKPVEVTRYVDKPYPVEVPRPYPVQVKVPYPVEQKVYVDRPVHVPYSVEKVIEKQILHPVPIPTPVGIPYAIQIPVEHKILYPITVEKPVPIPVEVEKPVPVEKVVHKEIPVPYPVEKRVPYPVPYETKVAIPVPIEHRVPVEKIVEKPVTVTKYVEKPVHIEVPRPVAIPVHIPQPYPVDRIVEKKVPYPVPVDRIVEKKIPVKVPYAVEKYVEKIVEKPVVLTKYVDKPYPVEKRVPYPVEKIVEKRVPYAVQVPYEVRVPYPVEKPVHIPAYRYYSDEEARHIIHYQKPDQRNTQTQLSQAQAYARYLQSLSDKYRNNRNVQSTLWGNQYASSYQYFNKTDKQSGLKNAQNVANYIKYLQHTQSKSLNHNGLNRNRSDFVGYQLRGAVLRAPKTLKIEYGGFKPPLVPSTEVDLDGIPVNKRDD

Summary

Uniprot
D0VEP6   A0A2H1VLH1   A0A2A4K4R9   A0A3S2NLB9   A0A0L7LMM6   A0A212ER32   + More
A0A0N1I5D3   A0A0N1PIS5   A0A182TAQ7   A0A182YDZ8   A0A182R1D6  
Pubmed
19121390    26227816    22118469    26354079    25244985   
EMBL
BABH01024224    GU070720    ACY06930.1    ODYU01002949    SOQ41094.1    NWSH01000151    + More
PCG79026.1    RSAL01000009    RVE53818.1    JTDY01000608    KOB76481.1    AGBW02013121    OWR43956.1    KQ458995    KPJ04421.1    KQ460129    KPJ17559.1    AXCN02002427   
Proteomes
UP000005204    UP000218220    UP000283053    UP000037510    UP000007151    UP000053268    + More
UP000053240    UP000075901    UP000076408    UP000075886   
PRIDE
D0VEP6   
ProteinModelPortal
D0VEP6   A0A2H1VLH1   A0A2A4K4R9   A0A3S2NLB9   A0A0L7LMM6   A0A212ER32   + More
A0A0N1I5D3   A0A0N1PIS5   A0A182TAQ7   A0A182YDZ8   A0A182R1D6  

Ontologies

KEGG
101746552    no KO assigned | (RefSeq) CPH35; uncharacterized LOC101746552
GO

Topology

Length:
1047
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  1047
 
 

Population Genetic Test Statistics

Pi
280.609152
Theta
232.960642
Tajima's D
-2.306422
CLR
123.801596
CSRT
0.00299985000749963
Interpretation
Possibly Positive selection
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