Gene

KWMTBOMO14450

Pre Gene Modal

BGIBMGA000084

Annotation

PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]

Location

Bomo_Chr24(-):6613529-6620327      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.269

CDS

ATGTGGCCTGCGTCCCAATATTCTCACACAAACACCCAGCCTATAAAGGCTACGAATGAACACCAGAACCAGCAAAATCTGAAGACCTTGGGCATGACCTCTGCAATTTCTACAGCAGGGCCTAAACCAATCGATATAGAAAAAACGAATGATCTTAAAGTTTCTCTGACACCCTTTGGAGTTTTTGAGTCCGAAGCAGAGATGCACCATAGGATGGAAGTTCTTGGTGCTTTACATCGTCTGGTGAGGCAATGGATAAGAGATGAGTCTTTAAGAAAAAACATGCCGCCTAGCGTCGCTGATACTGTCGGTGGAAATATTTATACTTTTGGATCTTATAGACTAGGGGTTCATCATCGCGGTGCCGATATAGACGCATTGTGCGTTGCGCCTCGTCATATAGAAAGATGCGACTATTTCTTAACGTTTTATGACCTTTTAAAGCAACAACCACAGGTTAAAGATTTGCGAGCTGTTGAAGATGCTTTCGTGCCTGTTATCAAAATGAATTTTGACGGAATTGAAATTGACTTACTTTTTGCCAGATTAGCCCTCAAGGAAATACCTGATTCCTTTGATTTGAGAGACGATATGCTGCTTAAGAATCTAGATCAGAAATGCGTACGTTCACTGAATGGATGTCGCGTTACCGACGAAATTCTACGTCTCGTACCTAACATAAACAACTTCCGACTGACGCTCAGAGCTATTAAACTGTGGGCCAAACGTCACGGCATTTACTCAAACACCCTGGGATACCTGGGTGGCGTATCCTGGGCCATGCTAGTCGCCCGAACCTGTCAGTTGTATCCCAACGCATTGCCTGCCACTCTAGTCCACAAGTTCTTCTTGGTCTTCAGCCAGTGGAAGTGGCCCCAACCGGTCTTGCTAAAACAGCCCGATCATGTCAACCTAGGTTTTCCTGTTTGGGATCCAAGGGTGAACGTAGCCGACAGATACCACCTAATGCCCATCATCACGCCCGCATACCCTCAGCAGAACTCCACATTTAACGTCTCAGCTTCAACTAGAACAATCATCATGGAAGAGTTTAGACTTGGGCTTGCAGTGACCGACGAGATAATGCTCGGCAAATGCGGCTGGGAGCGTCTATTCGAGGCTCCGAATTTCTTTTCCCGCTACAAACACTTCATAGTGCTGTTGGCTTCCTCCGCTAGCGCCGACGATCAGCTGCAGTGGTGCGGACTCATTGAAAGCAAGATACGTCATCTTATCGCTACACTGGAACGCAATCAACATATAACGATAGCTCACGTTAACCCGGAGTGCTATAATTCAGTGCCGCTGAACACCAATAATGGGCAACCATTAGCCTTACCACCCGGTAAATATAATAATAAATAA

Protein

MWPASQYSHTNTQPIKATNEHQNQQNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALPPGKYNNK

Cofactor

Mg(2+)

Uniprot

H9IS58   A0A2A4K423   A0A2H1VVS6   A0A212F775   A0A0N1PJK2   A0A0N1PG35   + More
A0A0C9RJ61   A0A195F1U3   A0A158NJK6   A0A195BGT5   A0A195EKI3   E2A8E1   A0A067R2Q0   F4X3Z0   A0A026VUG7   A0A195CAI7   E9I9A8   A0A3L8DXF2   A0A0L7QRR3   A0A151WT88   A0A154P9N2   A0A182Y4L3   D6WF69   A0A182PCV2   A0A0J7L557   A0A1B6E5C6   E2BT45   A0A1B6CNZ7   A0A182T0X2   A0A2A3EJP1   A0A088AK58   A0A182TIL8   K7JBE6   A0A182RDE5   A0A182HJN7   A0A1W4XKB7   A0A310SMC6   A0A2J7R9B5   A0A182KWU3   A0A182UVD4   A0A182XKA7   A0A0M9A7U1   A0A0A9X7J4   F5HLS4   A0A0A9X059   A0A0A9X053   A0A182M9C9   A0A0A9X2R2   A0A182K1W5   A0A182NSU1   Q17AA5   A0A1B6HP86   A0A2M3Z3D8   W5J5X0   A0A1S4FAE2   A0A0P4VY47   A0A182JFJ5   A0A2M4AKM0   A0A2M4A879   A0A2M4A7N3   A0A084WT28   A0A2M4CNJ1   A0A2M3Z421   A0A182G092   A0A2M3Z3Y5   A0A2M4BEY7   A0A2M3Z3R2   A0A2M4A9C7   A0A182HDC1   A0A2M4AB89   A0A224X9L3   A0A023F1U6   A0A182QW87   A0A1Q3F6W0   A0A1Y1LKC1   A0A1Q3F7K4   A0A1Q3F7D0   A0A1Q3F6X6   A0A1J1I2A0   A0A1Q3F774   A0A1Q3F863   A0A1Q3F769   A0A1B6LAR1   T1IGG3   B0W4E2   T1PI16   A0A1I8MLL9   A0A0T6B5P1   A0A0P5J446   A0A0P5AI12   E9GI20   A0A0N8E047   A0A0P5WDZ3   A0A0N8AD07   A0A0P6HKK4   A0A0P6GI67   A0A0P5TNL4   A0A0P6HH38   A0A0P6IIJ9   A0A0P5HWD3  

Pubmed

19121390    22118469    26354079    21347285    20798317    24845553    + More
21719571    24508170    21282665    30249741    25244985    18362917    19820115    20075255    20966253    25401762    26823975    12364791    14747013    17210077    17510324    20920257    23761445    27129103    24438588    26483478    25474469    28004739    25315136    21292972   

EMBL

BABH01024205    NWSH01000151    PCG79007.1    ODYU01004576    SOQ44592.1    AGBW02009925    + More
OWR49559.1    KQ460129    KPJ17565.1    KQ458995    KPJ04415.1    GBYB01006951    JAG76718.1    KQ981856    KYN34438.1    ADTU01018020    KQ976490    KYM83431.1    KQ978782    KYN28427.1    GL437557    EFN70300.1    KK852954    KDR13292.1    GL888624    EGI58937.1    KK107929    EZA47121.1    KQ978081    KYM97123.1    GL761765    EFZ22846.1    QOIP01000003    RLU25117.1    KQ414782    KOC61191.1    KQ982765    KYQ51007.1    KQ434849    KZC08543.1    KQ971327    EFA00912.2    LBMM01000685    KMQ97766.1    GEDC01015932    GEDC01004158    JAS21366.1    JAS33140.1    GL450326    EFN81136.1    GEDC01022207    JAS15091.1    KZ288224    PBC31947.1    AAZX01003243    AAZX01015783    APCN01002192    KQ759882    OAD62201.1    NEVH01006600    PNF37421.1    KQ435717    KOX79015.1    GBHO01030554    GDHC01012081    GDHC01004567    JAG13050.1    JAQ06548.1    JAQ14062.1    AAAB01008904    EGK97235.1    GBHO01030550    GBHO01030548    GDHC01015794    JAG13054.1    JAG13056.1    JAQ02835.1    GBHO01030553    GBHO01030552    GBRD01013277    JAG13051.1    JAG13052.1    JAG52549.1    AXCM01002171    GBHO01030551    GBRD01011176    JAG13053.1    JAG54648.1    CH477337    EAT43186.1    GECU01031543    GECU01031218    JAS76163.1    JAS76488.1    GGFM01002207    MBW22958.1    ADMH02002120    ETN58788.1    GDKW01001047    JAI55548.1    AXCP01007773    GGFK01008009    MBW41330.1    GGFK01003683    MBW37004.1    GGFK01003419    MBW36740.1    ATLV01026812    KE525419    KFB53372.1    GGFL01002724    MBW66902.1    GGFM01002513    MBW23264.1    GGFM01002475    MBW23226.1    GGFJ01002474    MBW51615.1    GGFM01002410    MBW23161.1    GGFK01004040    MBW37361.1    JXUM01129458    KQ567448    KXJ69424.1    GGFK01004557    MBW37878.1    GFTR01007400    JAW09026.1    GBBI01003414    JAC15298.1    AXCN02000301    GFDL01011792    JAV23253.1    GEZM01054986    GEZM01054985    GEZM01054984    GEZM01054983    GEZM01054980    GEZM01054978    JAV73278.1    GFDL01011494    JAV23551.1    GFDL01011598    JAV23447.1    GFDL01011748    JAV23297.1    CVRI01000036    CRK92974.1    GFDL01011630    JAV23415.1    GFDL01011281    JAV23764.1    GFDL01011717    JAV23328.1    GEBQ01019175    JAT20802.1    ACPB03008998    ACPB03008999    ACPB03009000    DS231836    EDS33227.1    KA647775    AFP62404.1    LJIG01009679    KRT82598.1    GDIQ01205505    JAK46220.1    GDIP01201674    JAJ21728.1    GL732545    EFX80951.1    GDIQ01074892    JAN19845.1    GDIQ01243540    GDIQ01190710    GDIQ01163824    GDIQ01116143    GDIP01087493    JAK08185.1    JAM16222.1    GDIP01159481    JAJ63921.1    GDIQ01031862    JAN62875.1    GDIQ01032866    JAN61871.1    GDIP01127138    JAL76576.1    GDIQ01032867    JAN61870.1    GDIQ01030768    JAN63969.1    GDIQ01221937    JAK29788.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000078541    + More
UP000005205    UP000078540    UP000078492    UP000000311    UP000027135    UP000007755    UP000053097    UP000078542    UP000279307    UP000053825    UP000075809    UP000076502    UP000076408    UP000007266    UP000075885    UP000036403    UP000008237    UP000075901    UP000242457    UP000005203    UP000075902    UP000002358    UP000075900    UP000075840    UP000192223    UP000235965    UP000075882    UP000075903    UP000076407    UP000053105    UP000007062    UP000075883    UP000075881    UP000075884    UP000008820    UP000000673    UP000075880    UP000030765    UP000069272    UP000069940    UP000249989    UP000075886    UP000183832    UP000015103    UP000002320    UP000095301    UP000000305   

PRIDE

H9IS58   

Pfam

PF04928   PAP_central        + More
PF04926   PAP_RNA-bind
PF01909   NTP_transf_2
PF09752   DUF2048

Interpro

IPR007012   PolA_pol_cen_dom        + More
IPR007010   PolA_pol_RNA-bd_dom       
IPR011068   NuclTrfase_I-like_C       
IPR014492   PolyA_polymerase       
IPR002934   Polymerase_NTP_transf_dom       
IPR019149   ABHD18       
IPR029058   AB_hydrolase       

SUPFAM

SSF55003   SSF55003        + More
SSF53474   SSF53474       

Gene 3D

3.40.50.1820    

ProteinModelPortal

H9IS58   A0A2A4K423   A0A2H1VVS6   A0A212F775   A0A0N1PJK2   A0A0N1PG35   + More
A0A0C9RJ61   A0A195F1U3   A0A158NJK6   A0A195BGT5   A0A195EKI3   E2A8E1   A0A067R2Q0   F4X3Z0   A0A026VUG7   A0A195CAI7   E9I9A8   A0A3L8DXF2   A0A0L7QRR3   A0A151WT88   A0A154P9N2   A0A182Y4L3   D6WF69   A0A182PCV2   A0A0J7L557   A0A1B6E5C6   E2BT45   A0A1B6CNZ7   A0A182T0X2   A0A2A3EJP1   A0A088AK58   A0A182TIL8   K7JBE6   A0A182RDE5   A0A182HJN7   A0A1W4XKB7   A0A310SMC6   A0A2J7R9B5   A0A182KWU3   A0A182UVD4   A0A182XKA7   A0A0M9A7U1   A0A0A9X7J4   F5HLS4   A0A0A9X059   A0A0A9X053   A0A182M9C9   A0A0A9X2R2   A0A182K1W5   A0A182NSU1   Q17AA5   A0A1B6HP86   A0A2M3Z3D8   W5J5X0   A0A1S4FAE2   A0A0P4VY47   A0A182JFJ5   A0A2M4AKM0   A0A2M4A879   A0A2M4A7N3   A0A084WT28   A0A2M4CNJ1   A0A2M3Z421   A0A182G092   A0A2M3Z3Y5   A0A2M4BEY7   A0A2M3Z3R2   A0A2M4A9C7   A0A182HDC1   A0A2M4AB89   A0A224X9L3   A0A023F1U6   A0A182QW87   A0A1Q3F6W0   A0A1Y1LKC1   A0A1Q3F7K4   A0A1Q3F7D0   A0A1Q3F6X6   A0A1J1I2A0   A0A1Q3F774   A0A1Q3F863   A0A1Q3F769   A0A1B6LAR1   T1IGG3   B0W4E2   T1PI16   A0A1I8MLL9   A0A0T6B5P1   A0A0P5J446   A0A0P5AI12   E9GI20   A0A0N8E047   A0A0P5WDZ3   A0A0N8AD07   A0A0P6HKK4   A0A0P6GI67   A0A0P5TNL4   A0A0P6HH38   A0A0P6IIJ9   A0A0P5HWD3  

PDB

4LT6     E-value=9.62735e-171,     Score=1541

KEGG

101740532    K14376 poly(A) polymerase [EC:2.7.7.19] | (RefSeq) poly(A) polymerase type 3

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004652   GO:0043631   GO:0003723   GO:0046872   GO:0005634   GO:0031123   GO:0006378   GO:0016779   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR10682  

Length:

454

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.69915

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08209

outside

1  -  454

 

 

Pi

261.23671

Theta

167.075238

Tajima's D

1.825236

CLR

0.235486

CSRT

0.853207339633018

Interpretation

Uncertain