Silkworm Genome Informatics Database

Gene

KWMTBOMO14449

Pre Gene Modal

BGIBMGA000133

Annotation

PREDICTED:_zinc_finger_protein_718-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(+):6597588-6606407 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.142

CDS

ATGGATTTAAAACTAGTCGTCCGATATCTTTCCAATGGCAATTTAGAAGAAAACTTGTGTTTAATCTGCTTGGCGCCTTTGGGTATATCATATGAAAATGTTCATACTAAAATCTGTAAAGAAGAGAACGAATTTAGTTTGGTTGATATACTAAGAACCGTTTGTCAAATTGAGTTTTCAGATGCCGACAATTATAATGTATGCCACAGTTGTTTTGTGGTCGCGTCAGTAGCCTATAAATTCTATTTGCAGACTAAACAAAGTCAAGAAATACTAAAATTTTACACGGATGAAATATTAAGGGCAGTTGAAAATTATAATAACGACCACCATACTGATTTCTCTGCACTTTGTATCCCTTTACCTGTTTACAAACCAGAAACACCAACCTATAACTTTGATTTACGATGCCTAGATTACAAAGACATAAATCCTAAAAGTATACAAGAACTGCATAATAATGACAATAATGTAATTTTAATCAAAAATGAAGGTGAACAACAATATTACAAATTCATTAAAAACAGTGAAATGGCCTTATCACATAATAAAAAAACAGTTTCTGGTGATTATTTAAAAATGGAAGCACCATTGACAAATCTAAAGGGAAAACCAAAAAGAAAAAGAGGTCCGATGACTTATAAAAGTTGTAGAATGTGTCCAGTTAAATATCGGTTCACTTCGAAACTACAACAACATATGAAATTGGATCATAACATTGTTTTGTACGTATGTAAGATTTGCAAGGCAATGACGGAAGATCAAATTGAACACCAAAATCATATAAACACTCATACAAATGTGCATGAATGTGCTCTTTGTGGTATGGTCTTTAAAAAGCGTGATACTATAATATCCCATTTGAAATGGCACGACGCCATGAGGTGTTCTGTTCAAGCGGATGCTGTTCACATTTGTGAAATATGCGGAATGATATTTCAAAGCGAAGATGAACTATCGGAGCATTGTGACAAGAAACATACAAAGAAATTCACTTGTTACTACTGCGGCAAAATGTATAAAAGCGAATCTAGCTTCGAAATACACATCAATAAACATGAAGAAAAAATTGTAAATAAAGAACCAAGGAACGTAAAACAAGCAACTACCAAAGACAAGTCTAAAGCGGATCCGTCGAAGCCACGTTGCGCTTGCGACACGTGCGGCCGCAGCTTCGTGGACCAGCGCACCCTCATGTGGCACCAGCGACTGCACAGTAACGAGCGGCCCTACGTGTGCGACGTGTGCGGGCGCGGCTTCGTGTCTCTGAATCGCCGCAATCAGCACCGCGTCTGCGCGCACTCCGCGCCCAGCCGCCGCTGTCCGCTGTGCCCCGCCCTGTTCCATCTGCGGTCCATGGTCAACACGCATCTCAAAAAGGTACATTTGAAAGCTCACAAGAAACGCCGCAATCGAACAAGCAAGTACCAAGACGTTCCCTGGCGCACGGAGACCGTCCCCATACAGGAGCTGAGCGTATCGATACAGGACGAAATATTGGAGTTGCAGAATGCAAAGCGAACCACGAATGACGTCATCGATTGGGGTTGCCCTTGA

Protein

MDLKLVVRYLSNGNLEENLCLICLAPLGISYENVHTKICKEENEFSLVDILRTVCQIEFSDADNYNVCHSCFVVASVAYKFYLQTKQSQEILKFYTDEILRAVENYNNDHHTDFSALCIPLPVYKPETPTYNFDLRCLDYKDINPKSIQELHNNDNNVILIKNEGEQQYYKFIKNSEMALSHNKKTVSGDYLKMEAPLTNLKGKPKRKRGPMTYKSCRMCPVKYRFTSKLQQHMKLDHNIVLYVCKICKAMTEDQIEHQNHINTHTNVHECALCGMVFKKRDTIISHLKWHDAMRCSVQADAVHICEICGMIFQSEDELSEHCDKKHTKKFTCYYCGKMYKSESSFEIHINKHEEKIVNKEPRNVKQATTKDKSKADPSKPRCACDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCGRGFVSLNRRNQHRVCAHSAPSRRCPLCPALFHLRSMVNTHLKKVHLKAHKKRRNRTSKYQDVPWRTETVPIQELSVSIQDEILELQNAKRTTNDVIDWGCP

Uniprot

A0A2A4K411 A0A1E1WNQ2 A0A0N1IN08 A0A0N1IFY6 A0A0L7LG00 A0A0T6AZJ0 + More
A0A1W4X773 A0A1W4WWE3 A0A3B5KST3 A0A2A4KBE3

Pubmed

26354079 26227816 21551351

EMBL

NWSH01000151 PCG79001.1 GDQN01009228 GDQN01002391 JAT81826.1 JAT88663.1 + More
KQ458995 KPJ04414.1 KQ460129 KPJ17566.1 JTDY01001227 KOB74478.1 LJIG01016431 KRT80623.1 NWSH01000005 PCG80992.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000037510 UP000192223 UP000005226 + More

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR012934   Znf_AD
IPR003656   Znf_BED

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2A4K411 A0A1E1WNQ2 A0A0N1IN08 A0A0N1IFY6 A0A0L7LG00 A0A0T6AZJ0 + More
A0A1W4X773 A0A1W4WWE3 A0A3B5KST3 A0A2A4KBE3

PDB

5V3M E-value=8.27475e-14, Score=188

KEGG

101740395 no KO assigned | (RefSeq) zinc finger protein 343-like

GO

GO:0003676 GO:0005634 GO:0008270 GO:0003677 GO:0046872 GO:0004812 GO:0006418 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

518

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02257

Exp number, first 60 AAs:

0.0056

Total prob of N-in:

0.00223

outside

1 - 518

Pi

168.080394

Theta

160.702093

Tajima's D

0.444074

CLR

1.383805

CSRT

0.498775061246938

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics