SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14444  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000131
Annotation
PREDICTED:_valine--tRNA_ligase_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.399
 

Sequence

CDS
ATGTCAAAATTGTCAAAACATCAGGATTTGCAGCATAGATTAGCGACATCTACGACAAATATTTTGGTTAAAGAAAATTTACCCGCCGCTGCATACAGACCAGAAATTGTTGAAAAAAACAAATATGATAAATGGGAAAATGCAGGATTGTTCGAAGCCGAAAATTGTAGTAACAAGAATAATTTTAGTATAATATTACCGCCGCCTAACGTAACAGGGAAATTGCATTTAGGTCATGCATTAGCATGCACGATACAAGACGTAATAGTTAGGAGAAAAAGATCATTAGGCTATAATGTCTTATGGCTCCCTGGAACGGATCATGCAGGAATCGCTACACAGAGCATTGTTGAAAAATACTTAAAAAGTAAAGAAAACATAAATCGCTACGACATTGGACGTGAAAAATTTGTAGAAGAGGTATGGAAATGGCGGGAGAAACATGGAGATAGTATTACAGAACAGCTTCGAACCTTGGGCTGTTCACTTGACTGGTCCCGACAAGTTTTTACAATGGATCCTAAACACACCAAGGCCGTGAACACAGCATTCATTCAATTATTCCATAAAAATCTTATTTATAGAAAAAAAGCACTAGTTAATTGGTGCAATGCATTAAAATCAACTGTGTCAGATATTGAAGTGGAAAATGTACCAATAAATGAACCTAGTGATTTGAGTCTGCCAAATTATATAAAGCCTGTTAGGTTTGGATTGATATATGATTTTGCGTATAAAGTTTATGACAGCACTGAGGAAATAATTGTGTCTACAACAATGCCAGAGACGATGCTGGGAGATGTAGCAGTAGCTGTACATCCAGAAGACAAAAGATACCAACATTTGGAAGGTAAAAGGGTTATACATCCATTCAGAACGAATGAAACAATACCAATTATATTCGATAAATTCGTTGATCGGGAATTTGGTACAGGGGCTGTCAAAATCACACCCGCACATAGTAAAGTAGATTATGAAGTTGCTAAACAACACAATTTGCCTTTACTCCAAGTTATAAATGTGGAAGGATTGATAGAAAACACGGAAATATTTCAAGGACTCAAACGCTATGACTGTAGGTCCATATTAGTTCACAAACTAGATGATTTAGGTCTCATGAAAGAGATTAAACCACATATAATGACATTACCGATATGCAGTCGATCAGGAAACGTAATTGATCATTTACCTAAAGAACAATGGTTCTTATCTTGCGCCGAATTGAATAAAAAGGCCAGAGAGTGTGTTGAAAATCGTAAATTGAAAATAATACCCGAAAATTTCATTCAAAATTGGTTTAATTGGACCGATGATGGTAGAGATTGGTGCATTTCGCGACAGCTATGGTGGGGACATCAAATACCAGCTTATATGTGCAGTGTTGATGAAGAGCTGACTTGGGTAGCTGCTACCGATGAAAGCTCTGCCAAACAGCAGGCTTCTAAACATTTTAATACTTTACCTGATTTGATTAAAGTAGAAAGAGATACAGATGTCTTAGACACCTGGTTCTCATCGGGAATTTATCCTTTCGCAGCTTTAGGCTGGCCTGATCATGATTTTAGTAGAGACTATACGGAATTCTACCCTTTAAGTCTGTTAGCTACGGGTCACGACATCCTTGGGTTTTGGGTGCACAGAATGGTGATATTAGGCCTTGAATTAACAGGCAAAGTTCCGTTCGAAAAAGTTCTGTTGCACGGTATTGTTTGCGACAATAAAGGCGCTAAAATGTCTAAAAGCCGCGGAAACGTCATAGACCCCATTGACGTAATCGAGGGGATAAGCCTTGACGCCCTCAAAAAGAAAAGCGAGGAGATGCACAAAAGTGGTATTCTCAATAAGGATGAACTTAAAAAAGCATATTCGTATCACAAAGCTAATTTTTCAGCTACTAATGGCATCCCAGAATGCGGGGTAGACGCGTTAAGGTTCACATTACTGTCGCAAGACATAAAATCGCATTTCGTCAATTTTGATGTCAGCTATTGTCACTCGAACAAATTATTTTGTAATAAGATATGGCAAAGTATCAAATACACTCAGTTGTCGTACGCTAAATTGAAAGTGATAGATTCTGAAATAACCAAACAGGATTTGACTTTTTTTGATAGATGGATTCTGAGTAGATTGGCCAATATGGTCCAAAAAGTCAACGATACAATGGATTCATATGATTTCCAAGTGGCAACGAAAGCTATCAGAACATTGATTTACAATGAGTTTTGCGATATTTATTTGGAGGCGTCGAAACCGGGATTCGAGAATGATAATGTTAGAATCGGCTACGCTCACGCGCACACGTTGTCCGCAGTCTTGAACACGTCTCTGAGGTGTTTATACCCCTTCATGGTTTACATAACACAAGAATTAATACCAACGATACCGGATTTCGAAAGGAATGTAATAATAAATTTCAAAGACGCATCCGAAAAATTTCTATCATTTCCAAAAACTGAAGATTACGTGGAATGGAAAAACGAAATTATTGAAGAGCAAGCCGAAAAGATATTGAACGCGGTTAACTTAATACGCGAATTGAAAGGTCTATACAGTATTACGAATAAAGTTCGACCTATAATTAATGTGAGAACGGATAATGAAAATCTAATAGAAGCTATGAAAGATAATGTTGATATTATAACACATCTGACACGCGCGAAAGGTTTAACATTCAATGGTAAAGATGACAAAACTTACGTCAAAGGAATCCTGGATTTGAATACAGAAATATACGTGGAATTAGTCGGGGACGATATAGAGAATGCTATAACAAATGCGAAAAATAAATTGGAGAAACGAATAAAGAAATTAGAAGACTCTTTGAATAATATGGAGGAAAAATATTCGAATAGTAATTATTTAACGACAATACCGGAATGGACGCAAGTCCGCGATCACGAAAAATTGATGGCCAAAAGGAAAGAACTCAAGGAATTACAGAGGCTGATCTAG
Protein
MSKLSKHQDLQHRLATSTTNILVKENLPAAAYRPEIVEKNKYDKWENAGLFEAENCSNKNNFSIILPPPNVTGKLHLGHALACTIQDVIVRRKRSLGYNVLWLPGTDHAGIATQSIVEKYLKSKENINRYDIGREKFVEEVWKWREKHGDSITEQLRTLGCSLDWSRQVFTMDPKHTKAVNTAFIQLFHKNLIYRKKALVNWCNALKSTVSDIEVENVPINEPSDLSLPNYIKPVRFGLIYDFAYKVYDSTEEIIVSTTMPETMLGDVAVAVHPEDKRYQHLEGKRVIHPFRTNETIPIIFDKFVDREFGTGAVKITPAHSKVDYEVAKQHNLPLLQVINVEGLIENTEIFQGLKRYDCRSILVHKLDDLGLMKEIKPHIMTLPICSRSGNVIDHLPKEQWFLSCAELNKKARECVENRKLKIIPENFIQNWFNWTDDGRDWCISRQLWWGHQIPAYMCSVDEELTWVAATDESSAKQQASKHFNTLPDLIKVERDTDVLDTWFSSGIYPFAALGWPDHDFSRDYTEFYPLSLLATGHDILGFWVHRMVILGLELTGKVPFEKVLLHGIVCDNKGAKMSKSRGNVIDPIDVIEGISLDALKKKSEEMHKSGILNKDELKKAYSYHKANFSATNGIPECGVDALRFTLLSQDIKSHFVNFDVSYCHSNKLFCNKIWQSIKYTQLSYAKLKVIDSEITKQDLTFFDRWILSRLANMVQKVNDTMDSYDFQVATKAIRTLIYNEFCDIYLEASKPGFENDNVRIGYAHAHTLSAVLNTSLRCLYPFMVYITQELIPTIPDFERNVIINFKDASEKFLSFPKTEDYVEWKNEIIEEQAEKILNAVNLIRELKGLYSITNKVRPIINVRTDNENLIEAMKDNVDIITHLTRAKGLTFNGKDDKTYVKGILDLNTEIYVELVGDDIENAITNAKNKLEKRIKKLEDSLNNMEEKYSNSNYLTTIPEWTQVRDHEKLMAKRKELKELQRLI

Summary

Similarity
Belongs to the class-I aminoacyl-tRNA synthetase family.
EMBL
BABH01024198    KQ460195    KPJ17210.1    KZ150182    PZC72496.1    NWSH01000010    + More
PCG80930.1    KQ458995    KPJ04409.1    AGBW02009925    OWR49564.1    JTDY01002079    KOB72157.1    ODYU01008083    SOQ51383.1    NEVH01020938    PNF20542.1    KK852550    KDR21498.1    GEDC01016447    JAS20851.1    CH478188    EAT33621.1    GECZ01029316    JAS40453.1    CH478036    EAT34268.1    GEZM01012113    GEZM01012112    JAV93192.1    GDHC01011659    JAQ06970.1    AXCN02000483    APCN01002316    CP012525    ALC42892.1    DS232016    EDS31969.1    AXCM01002234    GAMC01017583    JAB88972.1    GFXV01004055    MBW15860.1    AAAB01008960    EAA11340.4    KB631941    ERL87383.1    GAKP01006939    JAC52013.1    CH379070    EAL30268.2    GFDL01012969    JAV22076.1    CH479208    EDW31171.1    ABLF02020786    FO082270    CCO66673.1    OUUW01000002    SPP76728.1    GBXI01004145    JAD10147.1    CH902618    EDV39660.1    KQ971318    EFA00421.1    ADMH02002104    ETN59051.1    GBXI01017651    JAC96640.1    GDIP01036441    JAM67274.1    GGMS01004800    MBY74003.1    GGFJ01001632    MBW50773.1    GDIP01105277    GDIP01053699    JAM50016.1    ATLV01017495    KE525170    KFB42222.1    AE014296    AY094873    AAF50346.1    AAM11226.1    AHN58013.1    GDIQ01184846    JAK66879.1    GL732623    EFX70267.1    NNAY01000392    OXU28696.1    CH940648    EDW60426.1    KRF79413.1    GDIP01014866    JAM88849.1    GDIP01147482    JAJ75920.1    GBXI01008083    GBXI01007615    JAD06209.1    JAD06677.1    CM000363    CM002912    EDX09784.1    KMY98518.1    CH480815    EDW40789.1    LRGB01001899    KZS10071.1    CH902619    EDV36455.1    KPU76227.1    CM000159    EDW93094.1    CH916366    EDV96210.1    CH933808    EDW10729.1    GAKP01021676    JAC37276.1    BT150333    AGW25615.1    CM000158    EDW90659.1    CH954178    EDV50610.1    AE013599    AAF58412.1    AAM68598.1    CM002911    KMY93428.1    KMY93427.1    JRES01001077    KNC25702.1    KMY93430.1    KMY93426.1    KMY93429.1    HAEE01015059    SBR35109.1    AGB93478.1    AY052099    AAK93523.1    HAED01004933    SBQ90963.1    CH480816    EDW47680.1    KK122555    KFM82983.1    APGK01049747    KB741156    ENN73612.1    CH954179    EDV56205.1    KQS62766.1    HADY01020107    HAEJ01013192    SBS53649.1    KK107419    EZA51074.1    HADW01007286    HADX01012572    SBP34804.1    GAMC01011870    JAB94685.1   
Pfam
PF08264   Anticodon_1        + More
PF00133   tRNA-synt_1
PF00043   GST_C
PF10458   Val_tRNA-synt_C
PF00270   DEAD
PF00567   TUDOR
PF04408   HA2
PF00271   Helicase_C
Interpro
IPR001412   aa-tRNA-synth_I_CS        + More
IPR033705   Anticodon_Ia_Val       
IPR002303   Valyl-tRNA_ligase       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002300   aa-tRNA-synth_Ia       
IPR014729   Rossmann-like_a/b/a_fold       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR010978   tRNA-bd_arm       
IPR037118   Val-tRNA_synth_C_sf       
IPR019499   Val-tRNA_synth_tRNA-bd       
IPR004046   GST_C       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR010987   Glutathione-S-Trfase_C-like       
IPR027417   P-loop_NTPase       
IPR002999   Tudor       
IPR007502   Helicase-assoc_dom       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR035437   SNase_OB-fold_sf       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
SUPFAM
SSF50677   SSF50677        + More
SSF47323   SSF47323       
SSF46589   SSF46589       
SSF47616   SSF47616       
SSF52540   SSF52540       
PDB
1IYW     E-value=6.7137e-150,     Score=1365

Ontologies

Topology

Length:
984
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04791
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.00203
outside
1  -  984
 
 

Population Genetic Test Statistics

Pi
267.52293
Theta
195.79961
Tajima's D
1.223052
CLR
0.12271
CSRT
0.724213789310534
Interpretation
Uncertain
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