Silkworm Genome Informatics Database

Gene

KWMTBOMO14442

Pre Gene Modal

BGIBMGA000130

Annotation

PREDICTED:_leucine-rich_repeat_protein_SHOC-2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(+):6505048-6512949 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.225 Nuclear Reliability : 1.359

CDS

ATGAGTGCCATATTAAAATTCATCCGTGAAAATCATATATTAGCACTAATTGAGCAAGCGATCGCCAAAAAAAAGTCGAGGTTAAGTTTAAACGGGTTTGAAATCACAGAAATACCTGGTTTACTATACACCTGTTTAGAAGTAGAACATCTGTACTTGCATAAAAACAAAATTAGCGTATTCCCTGTTGAGATAACGCTTCTAATAAATCTAACAACGCTTACTCTAGACTACAATAACTTATCATCGCTGCCAACTGAGATAGGGAACTTAAAAAACCTTGTAAATTTGAATTTGAGTTACAATCCATTAAATGTTTTGATCCCGGAAATCGGTGATCTGGAGAAGCTGGAAGCGTTCTGGTGTAATAGAATAGGTTTGAAAGAGATACCTAAAGAGATAGGAAAACTGACTCAGTTAGACACTTTTGGAGCCCGAGGAAATGAACTAAAGACTATTCCTGAAGAAATGACAAGCCTAGCTAAATTGAGATGGTTGACGCTTGAGAATAATCAAATCGAAACATTGCCAGATACGATGGACAGAATGACGGCCCTCGTCCATTGTAATTTACGTAACAACAGGCTAGAACAGTTTCCGTCATCGATACTCAAATGTAAAGAGCTGATGTTCCTCCAATTGAACAGTAATCAGATTTCATCAGTACCGGCCAATTTAGACACGAGCCTCGTACCCGGCTTAGAAATGATCGATTTGAGGTCGAATCCGATCTGTGAACTTTCGCATCCGGAGCACGCATTAATAAAATACACGGACGAGGCGACGACCCAAACGTCTGACAGTAACGGTTCCCTGGCGTCCGCTATGCCGTCAACCAGCCGCGTCTACGGAGCGCAGGCCTTGGCCCTCAATGCCACCGCCCTAAGGCTCCCGGCGGCGCCGGAACACCAGCATCCTGACCCGCTCGTGATAGAAATGGACTTAGATAGTTCGTCGGTGGAATCTTCAGAAGACTGGGAGAACAGCGTTAACAGCTCAGTACTTGACGTTCAGTACCAGAGCGAGGATGATATCGACGATAATGACATCGCTCAATTCTTTCAGGCTGTGGGTATGGTGTTGCCGGAATTGTCGAAATACGCATCGATGGCTTGTTAA

Protein

MSAILKFIRENHILALIEQAIAKKKSRLSLNGFEITEIPGLLYTCLEVEHLYLHKNKISVFPVEITLLINLTTLTLDYNNLSSLPTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSILKCKELMFLQLNSNQISSVPANLDTSLVPGLEMIDLRSNPICELSHPEHALIKYTDEATTQTSDSNGSLASAMPSTSRVYGAQALALNATALRLPAAPEHQHPDPLVIEMDLDSSSVESSEDWENSVNSSVLDVQYQSEDDIDDNDIAQFFQAVGMVLPELSKYASMAC

Uniprot

H9ISA3 A0A2A4KB89 A0A0N1PH25 A0A3S2NQR3 A0A0N1PF33 A0A212EKN5 + More
A0A2A4KAW5 A0A2W1BBZ8 A0A2H1WEC8 W8B3Q1 A0A0R3NL74 B4MIW3 D6WGS3 A0A1I8NM10 A0A1I8MVV5 A0A1I8NM12 A0A1W4XIP2 A0A2H1XLZ3

Pubmed

19121390 26354079 22118469 28756777 24495485 15632085 + More
17994087 18362917 19820115 25315136

EMBL

BABH01024190 NWSH01000010 PCG80932.1 KQ460195 KPJ17212.1 RSAL01000009 + More
RVE53830.1 KQ458995 KPJ04407.1 AGBW02014229 OWR42047.1 PCG80933.1 KZ150182 PZC72498.1 ODYU01008109 SOQ51423.1 GAMC01014869 GAMC01014867 JAB91688.1 CM000071 KRT01713.1 CH963719 EDW72052.1 KQ971327 EEZ99623.1 OEJX01000071 SOR63559.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000283053 UP000053268 UP000007151 + More
UP000001819 UP000007798 UP000007266 UP000095300 UP000095301 UP000192223 UP000234460

PRIDE

H9ISA3

Pfam

PF13855 LRR_8 + More
PF12799 LRR_4

Interpro

IPR003591   Leu-rich_rpt_typical-subtyp        + More
IPR001611   Leu-rich_rpt
IPR032675   LRR_dom_sf
IPR025875   Leu-rich_rpt_4

Gene 3D

3.80.10.10

ProteinModelPortal

H9ISA3 A0A2A4KB89 A0A0N1PH25 A0A3S2NQR3 A0A0N1PF33 A0A212EKN5 + More
A0A2A4KAW5 A0A2W1BBZ8 A0A2H1WEC8 W8B3Q1 A0A0R3NL74 B4MIW3 D6WGS3 A0A1I8NM10 A0A1I8MVV5 A0A1I8NM12 A0A1W4XIP2 A0A2H1XLZ3

PDB

4U06 E-value=6.29361e-19, Score=231

KEGG

101740175 no KO assigned | (RefSeq) leucine-rich repeat protein SHOC-2

GO

GO:0005515 GO:0007186 GO:0016021 GO:0004888 GO:0007166 GO:0016020 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

372

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0564300000000001

Exp number, first 60 AAs:

0.01408

Total prob of N-in:

0.01097

outside

1 - 372

Pi

165.658832

Theta

141.217167

Tajima's D

1.215878

CLR

1.544478

CSRT

0.71816409179541

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics