Gene

KWMTBOMO14438  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000090

Annotation

PREDICTED:_lysosome-associated_membrane_glycoprotein_1_[Bombyx_mori]

Location

Bomo_Chr24(-):6412645-6431087      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 0.968

CDS

ATGATTTCACTAAAATTGCTATGTTTATTGTTGGTGGTATGTTCAGCTCACAGCCTCCAGCTGGACAGCCAGGCTTCCACCAGGCGGCCGAGGGTCACGAAGTACAGCAAGACTACAATAGCGCCTGGCGGATCGACGGAATCGGTAACAGAAAGAAGTTTGGTGACGGCCACGTACCGTCTCCAAGGTGGTGGAGGGGAGACCTGTATCCTTCTGACTGTCGATGCTCTCCTGGACATATCTTACGTGACAAAGCTCAACGAACGCGCGGACGCGAATACTTTTGTGCCGAACAACGCTAACGTCGGAGGGGCGTGCAAGGATGGTGACGCCGAGACCTTAGTCGTTTCGTTTAAGGACTTCACTTTAGAATGGTTCTTTGCAAAGACTCCAGGAGGAGAGCGTTGGTATGCTGAGAGCATGAAGCTATCGTATAACTCCAGTTCTCGCATTCTGGAGCACGCGGCGAATCAAGGGAGACGCGTAACCCTCACCACGGACTCCAGAGAGTTGCTTTTCCCGACGCCAGTCGGAAAATCATATTTCTGCCCAGACGAGACGGTCATTGAACTCACCGAGGAGGATCCCAGCAACCCGACGTTGGCTCACAAAGCGAAGCTGTACCTCAGGCAGATGCGTCTGCAGCCGTTCATGTTCAAGCGGTCCGGCGAGTTCGGTCCGGCGTGGCACTGCGCCGGGGCCGCGCGGGCCCGCTCCGAGGCCGCACCGGTCGCGGTGGGAGCCGCGCTGGCCGTCGCGACCGCCGGCACGCTACTAGGCTACGCCATATGGCGGTATTTGAAAGTGAAGAAAGTACAATACGACACGATGGAATGA

Protein

MISLKLLCLLLVVCSAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESVTERSLVTATYRLQGGGGETCILLTVDALLDISYVTKLNERADANTFVPNNANVGGACKDGDAETLVVSFKDFTLEWFFAKTPGGERWYAESMKLSYNSSSRILEHAANQGRRVTLTTDSRELLFPTPVGKSYFCPDETVIELTEEDPSNPTLAHKAKLYLRQMRLQPFMFKRSGEFGPAWHCAGAARARSEAAPVAVGAALAVATAGTLLGYAIWRYLKVKKVQYDTME

Similarity

Belongs to the LAMP family.

Uniprot

H9IS64   A0A0N1IPN9   A0A212EKM7   A0A2W1BAX4   A0A2H1VPJ6   A0A1E1W9A9   + More
A0A2H1VE77   A0A2A4KA13   A0A0N1IDQ3   A0A336LM99   A0A1S4H6J3   A0A182HW30   A0A182WUE7   A0A182VIL4   A0A182UBC9   A0A182KKR3   A0A182RD78   A0A182M660   A0A1Q3FQ02   A0A182YAT5   A0A1B0CJX3   A0A182ST01   A0A084WLV8   A0A182JXS6   A0A182N3U6   A0A182IPL9   A0A182P5B0   A0A182WDS9   B0WMH8   A0A182FW79   W5JV50   A0A182QIK6   A0A1W7R4P2   A0A023ENF1   B3M4R9   A0A336LR72   A0A1A9XDA9   A0A1A9UQK9   B4KXR7   A0A1B0BPD1   B4J1S9   A0A0Q9WJ17   A0A1B0FBC8   A0A1A9ZS46   B4LFP8   A0A1I8MFJ1   A0A1S4FQE1   A0A0L0CFH0   A0A1A9WFH5   A0A1J1J1M6   A0A0P4VNG3   T1HPU4   A0A1W4VUN0   A0A195EYC6   A0A1I8PAR2   A0A151X492   F4W7Y9   A0A195C726   Q4QQ78   B4PFB8   A0A0J9RYK5   Q8IQV4   H0RNE8   B4IA76   W8BDL6   A0A195BR52   A0A195D7R2   A0A0A1X1G5   Q0IEI3   B3NIJ2   E9IXD7   A0A034WEM6   B4MLL3   A0A0K8U7D1   A0A146LRS4   A0A3B0K9D2   B4QRW5   A0A154PGH9   A0A0M3QWN0   A0A0L7RAX0   K7ISE4   Q2M0V6   V9IJ19   A0A088AU93   E2BKS8   E2AVT9   B4GR14   A0A0J7LAN9   A0A0T6BES2   A0A3B0KHZ2   B4ITI9   A0A026WTK7   J9LG62   A0A2H8TGM7   A0A2S2QB84   A0A1B6CDG2   A0A1B6ILU5  

Pubmed

19121390    26354079    22118469    28756777    12364791    20966253    + More
25244985    24438588    20920257    23761445    24945155    17994087    25315136    26108605    27129103    21719571    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24495485    25830018    17510324    21282665    25348373    26823975    20075255    15632085    20798317    24508170    30249741   

EMBL

BABH01024181    BABH01024182    KQ460195    KPJ17216.1    AGBW02014229    OWR42052.1    + More
KZ150182    PZC72502.1    ODYU01003682    SOQ42755.1    GDQN01007515    JAT83539.1    ODYU01001834    SOQ38574.1    NWSH01000010    PCG80919.1    KQ458995    KPJ04404.1    UFQT01000062    SSX19192.1    AAAB01008816    APCN01001460    AXCM01005765    GFDL01005463    JAV29582.1    AJWK01015516    ATLV01024296    KE525351    KFB51202.1    DS231998    EDS31049.1    ADMH02000039    ETN68026.1    AXCN02001097    GEHC01001519    JAV46126.1    GAPW01003157    JAC10441.1    CH902618    EDV39468.1    SSX19193.1    CH933809    EDW19774.2    JXJN01017884    CH916366    EDV98009.1    CH940647    KRF84876.1    CCAG010002032    EDW70366.1    JRES01000558    KNC30244.1    CVRI01000065    CRL05660.1    GDKW01003298    JAI53297.1    ACPB03001482    KQ981906    KYN33223.1    KQ982548    KYQ55236.1    GL887888    EGI69659.1    KQ978251    KYM95976.1    BT023538    AAY84938.1    CM000159    EDW95204.1    CM002912    KMZ00737.1    AE014296    AAN11627.1    BT132870    AEV12245.1    CH480826    EDW44189.1    GAMC01011480    GAMC01011479    GAMC01011477    GAMC01011476    JAB95078.1    KQ976424    KYM88439.1    KQ981153    KYN08925.1    GBXI01009113    JAD05179.1    CH477655    EAT37728.1    CH954178    EDV52488.2    GL766730    EFZ14764.1    GAKP01006352    JAC52600.1    CH963847    EDW72869.2    GDHF01030094    JAI22220.1    GDHC01008814    JAQ09815.1    OUUW01000009    SPP84730.1    CM000363    EDX11211.1    KQ434899    KZC10907.1    CP012525    ALC44433.1    KQ414617    KOC68067.1    CH379069    EAL30820.2    JR049863    AEY61103.1    GL448826    EFN83677.1    GL443213    EFN62361.1    CH479188    EDW40199.1    LBMM01000059    KMR05130.1    LJIG01001198    KRT85742.1    SPP84731.1    CH891709    EDW99702.2    KK107126    QOIP01000008    EZA58434.1    RLU19251.1    ABLF02023482    ABLF02023483    ABLF02023485    ABLF02023487    ABLF02023490    GFXV01001384    MBW13189.1    GGMS01005794    MBY74997.1    GEDC01025827    JAS11471.1    GECU01019806    JAS87900.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000218220    UP000053268    UP000075840    + More
UP000076407    UP000075903    UP000075902    UP000075882    UP000075900    UP000075883    UP000076408    UP000092461    UP000075901    UP000030765    UP000075881    UP000075884    UP000075880    UP000075885    UP000075920    UP000002320    UP000069272    UP000000673    UP000075886    UP000007801    UP000092443    UP000078200    UP000009192    UP000092460    UP000001070    UP000008792    UP000092444    UP000092445    UP000095301    UP000037069    UP000091820    UP000183832    UP000015103    UP000192221    UP000078541    UP000095300    UP000075809    UP000007755    UP000078542    UP000002282    UP000000803    UP000001292    UP000078540    UP000078492    UP000008820    UP000008711    UP000007798    UP000268350    UP000000304    UP000076502    UP000092553    UP000053825    UP000002358    UP000001819    UP000005203    UP000008237    UP000000311    UP000008744    UP000036403    UP000053097    UP000279307    UP000007819   

PRIDE

H9IS64    Q4QQ78    Q8IQV4    H0RNE8   

Pfam

PF01299   Lamp

Interpro

IPR002000   Lysosome-assoc_membr_glycop       

ProteinModelPortal

H9IS64   A0A0N1IPN9   A0A212EKM7   A0A2W1BAX4   A0A2H1VPJ6   A0A1E1W9A9   + More
A0A2H1VE77   A0A2A4KA13   A0A0N1IDQ3   A0A336LM99   A0A1S4H6J3   A0A182HW30   A0A182WUE7   A0A182VIL4   A0A182UBC9   A0A182KKR3   A0A182RD78   A0A182M660   A0A1Q3FQ02   A0A182YAT5   A0A1B0CJX3   A0A182ST01   A0A084WLV8   A0A182JXS6   A0A182N3U6   A0A182IPL9   A0A182P5B0   A0A182WDS9   B0WMH8   A0A182FW79   W5JV50   A0A182QIK6   A0A1W7R4P2   A0A023ENF1   B3M4R9   A0A336LR72   A0A1A9XDA9   A0A1A9UQK9   B4KXR7   A0A1B0BPD1   B4J1S9   A0A0Q9WJ17   A0A1B0FBC8   A0A1A9ZS46   B4LFP8   A0A1I8MFJ1   A0A1S4FQE1   A0A0L0CFH0   A0A1A9WFH5   A0A1J1J1M6   A0A0P4VNG3   T1HPU4   A0A1W4VUN0   A0A195EYC6   A0A1I8PAR2   A0A151X492   F4W7Y9   A0A195C726   Q4QQ78   B4PFB8   A0A0J9RYK5   Q8IQV4   H0RNE8   B4IA76   W8BDL6   A0A195BR52   A0A195D7R2   A0A0A1X1G5   Q0IEI3   B3NIJ2   E9IXD7   A0A034WEM6   B4MLL3   A0A0K8U7D1   A0A146LRS4   A0A3B0K9D2   B4QRW5   A0A154PGH9   A0A0M3QWN0   A0A0L7RAX0   K7ISE4   Q2M0V6   V9IJ19   A0A088AU93   E2BKS8   E2AVT9   B4GR14   A0A0J7LAN9   A0A0T6BES2   A0A3B0KHZ2   B4ITI9   A0A026WTK7   J9LG62   A0A2H8TGM7   A0A2S2QB84   A0A1B6CDG2   A0A1B6ILU5  

KEGG

101745705    no KO assigned | (RefSeq) lysosome-associated membrane glycoprotein 1

GO

GO:0016021   GO:0016020   GO:0006355   GO:0043565   GO:0006816   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR11506  

Subcellular location

Membrane  

SignalP

Position:   1 - 18,         Likelihood:  0.995608

 

 

Length:

278

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.52858

Exp number, first 60 AAs:

0.06398

Total prob of N-in:

0.01939

outside

1  -  241

TMhelix

242  -  264

inside

265  -  278

 

 

Pi

250.214201

Theta

150.491683

Tajima's D

2.148372

CLR

0.047284

CSRT

0.905804709764512

Interpretation

Uncertain