Silkworm Genome Informatics Database

Gene

KWMTBOMO14437

Pre Gene Modal

BGIBMGA000091

Annotation

PREDICTED:_uncharacterized_protein_LOC101745557_[Bombyx_mori]

Location

Bomo_Chr24(-):6356085-6376467 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.04

CDS

ATGGAAAACTGCTCCGATCGGCTCAGTCCACCGAGTGATGTGACCAGCGGCTCGGAAACCTCACTCCCGCCCTTCAACTACGAACCAAGCCAGTTCTACGCGCAACAAGAACTCGAGAAACAGTATTTCTCGTGTAAGAAGACAAAAGACGAACGCAAAACGAACGCCATTTACATAGACGGTAAAGCTTACGAGAGCCAGCAGAGGAACAAGAGGTACATCAACTTCGAGCTGAAGCTTCCGCCGCACGACGATTACTTCACGATCGAAAGCGACCGCCAGAACTATTACGACGAATTAAAAAGCTGCATTCACAACGAGAGCGCGCTCGTGGAGCTAAAGGGACCGACGGGGTTCGAAGACACGGAAGGCAACGAACGCGTTCAGTTTTGCGCCGAGAACGAGAACAATAACACGAGGAGATGCCTGAACTTCAATTCGGAGCAGGTTCAGTGCGTCTGCGAAGCGCTACAGCAGAAAGGGGACATTGAGAAACTGGCCGCTTTTTTATGGAGTCTACCGCCCAGTGAATTGTTGCGGGGAAACGAAACTGTGCTCAGGGCCCGAGCTTTGGTCGCTTACCACAGAGGAGTGTTCCAAGAGCTTTACGCTATATTGGAAGCTCACACGTTTTCCCCGAGACACCACACGTCCCTACAGAACTTGTGGTTCAAAGCTCATTACAAAGAAGCCGAAAAAGTACGCGGGAGGGCTTTGGGAGCCGTTGACAAATATAGGTTAAGAAAGAAATACCCTTTACCCAAGACCATATGGGATGGCGAAGAGACCGTCTATTGCTTCAAAGAGAAAAGCCGAAACGCTCTGAAGGACTGTTATTACAGGAATCGGTACCCGACGCCTGACGAGAAACGAGCCCTCGCTCAGAAGACGGGTCTGACGTTAACGCAAGTATCAAACTGGTTCAAGAATCGTAGACAGCGCGACAGGACTCCGCAACAGCCTAACAGACCCGAGATGCTGGTGCCGGCGCAGTACGCGGGGCCGCAGGGAGGACTTGCCCAAGCTTTACTGCCGAACGCGTACTACCATCAGCTCCAAGACCCTACGCATTATCTTCACGGAACACCGTGA

Protein

MENCSDRLSPPSDVTSGSETSLPPFNYEPSQFYAQQELEKQYFSCKKTKDERKTNAIYIDGKAYESQQRNKRYINFELKLPPHDDYFTIESDRQNYYDELKSCIHNESALVELKGPTGFEDTEGNERVQFCAENENNNTRRCLNFNSEQVQCVCEALQQKGDIEKLAAFLWSLPPSELLRGNETVLRARALVAYHRGVFQELYAILEAHTFSPRHHTSLQNLWFKAHYKEAEKVRGRALGAVDKYRLRKKYPLPKTIWDGEETVYCFKEKSRNALKDCYYRNRYPTPDEKRALAQKTGLTLTQVSNWFKNRRQRDRTPQQPNRPEMLVPAQYAGPQGGLAQALLPNAYYHQLQDPTHYLHGTP

Uniprot

H9IS65 A0A2A4KB00 A0A2W1BLE6 A0A2H1W9X5 A0A0N1IN86 A0A0N0PDI6 + More

Pubmed

19121390 28756777 26354079

EMBL

BABH01024178 BABH01024179 NWSH01000010 PCG80920.1 KZ150182 PZC72503.1 + More
ODYU01007191 SOQ49756.1 KQ458995 KPJ04403.1 KQ460195 KPJ17217.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240

PRIDE

H9IS65

Pfam

PF16878 SIX1_SD + More
PF00046 Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR009057   Homeobox-like_sf
IPR031701   SIX1_SD
IPR017970   Homeobox_CS

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9IS65 A0A2A4KB00 A0A2W1BLE6 A0A2H1W9X5 A0A0N1IN86 A0A0N0PDI6 + More

PDB

4EGC E-value=8.36557e-68, Score=652

KEGG

101745557 K15615 homeobox protein SIX4 | (RefSeq) uncharacterized LOC101745557

GO

GO:0043565 GO:0006355 GO:0005634 GO:0003677 GO:0016021 GO:0006816 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

363

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00203

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01048

outside

1 - 363

Pi

223.947807

Theta

185.735256

Tajima's D

1.061854

CLR

0.098245

CSRT

0.672716364181791

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics