Gene

KWMTBOMO14433  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000127

Annotation

PREDICTED:_60S_ribosome_subunit_biogenesis_protein_NIP7_homolog_[Amyelois_transitella]

Location

Bomo_Chr24(+):5955424-5958635      View in EpiBrowser

Full name

60S ribosome subunit biogenesis protein NIP7 homolog      

Location in the cell

Cytoplasmic   Reliability : 1.347

CDS

ATGAAAGTATTATCAGAAGATCGTACAAGAATATTATTCGAGAAGCTAACCAAATACATTGGAGTAAACGTTAAGTTATTAATAGACAGACCTGATGGCACATATTGCTTCAGAGAGAAGAAAGACAGAGTGTATTACATATCAGAGAAGCTACTGCATCTAGCACAGACAGTGAAGCCGGACAACTTAGTATCTGCGGGGACATGCTTCGGAAAGTTCACAAAGACAAATAAATTTAGGTTGCACATTACAGCTTTGACTTACATATCACCCTATGCGCCGTTCAAAGTGTGGGTGAAGCCGTCTGCGGAACAACAGTTCTTGTATGGACACCACATCATCAAAAGTGGCTTGGGCCGGATAACAGAAAATACACCGAAACATCAAGGTGTGGTGGTATTAACGATGTCAGATATTCCGATTGGCTTTGGCGTAGCTTCAAGAACGACGGCAGAATGTCGACACGCTGATCCTTTGGCGACGATTGTCTTCCACCAGGCCGACGTAGGAGAATATATACGCTCTGAGGATACGCTTACGTAG

Protein

MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTLT

Description

Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly.

Subunit

Interacts with pre-ribosome complex.
Monomer. Interacts with pre-ribosome complex. May bind to RNA. Interacts with NOL8. Interacts with FTSJ3 (By similarity).

Similarity

Belongs to the NIP7 family.

Keywords

Complete proteome   Nucleus   Reference proteome   Ribosome biogenesis   RNA-binding  

Feature

chain  60S ribosome subunit biogenesis protein NIP7 homolog

Uniprot

H9ISA0   A0A2A4J4V0   A0A2H1WEK7   A0A3S2NTI5   A0A194QHI8   S4NZI3   + More
A0A212FG66   A0A1E1WB68   A0A067QNL6   D7GXI8   A0A1W4X7P3   A0A1B0CLE1   A0A195DGC5   U5EUJ5   E2A7N0   A0A336JYL7   A0A1J1HK51   K7IVJ5   A0A195BM03   A0A158NKL5   A0A232FCQ2   F4WWE6   A0A1L8DRS9   A0A2P8YI85   A0A1S3DEV5   A0A2M4CT96   A0A2M4AX48   A0A195FBM5   Q17AX1   A0A023EH57   T1DP33   A0A2M4C101   W5JX16   A0A2M4AX45   A0A3B4DBE2   A0A1B6J6F3   A0A2M3ZCJ3   B2GR20   Q503P2   A0A1B6F7V8   A0A3B3Q8F5   A0A0E9WVC3   W5LZK7   A0A182U016   Q7QBV7   A0A182LFI9   E9IFF1   A0A182XVH7   A0A182VJN5   A0A151IEM7   E2BWU0   A0A3Q1ELP8   A0A3Q1BFU9   A0A3P8RVL8   A0A0V0GCP0   A0A182K7H0   A0A026WG02   A0A1B6LU25   A0A3B4WQ12   A0A3B4TBS0   A0A0B8RY13   A0A2I4CKG4   A0A0K8RYX1   J3SEX1   A0A1A7XGV5   A0A182RY97   A0A3P8VWI9   A0A3Q3B7H1   A0A1L8DRW8   A0A1W5B124   A0A1L8GKU2   Q6DFH9   A0A0P5ZLV8   R4FLY1   A0A2J7QUW8   A0A3B5Q778   A0A0P5FJS7   A0A3F2Z118   T1DM61   A0A1Q3F258   A0A1A8MF67   A0A1A8RKZ7   A0A1A8JZW5   A0A1A8C9L5   A0A1A8H528   A0A1A7ZV45   A0A0P5PBP6   A0A091FSJ8   A0A182Q4X4   A0A1S3HGN7   A0A3Q3MRB4   B0WDI8   A0A2R5LFL7   A0A0S7LGP5   A4QND5   W5P046   A0A3B5B069   G1TE50   A0A1Z5L753   A0A3Q3J499  

Pubmed

19121390    26354079    23622113    22118469    24845553    18362917    + More
19820115    20798317    20075255    21347285    28648823    21719571    29403074    17510324    24945155    26483478    20920257    23761445    29240929    25613341    12364791    14747013    17210077    20966253    21282665    25244985    24508170    30249741    25476704    25727380    23025625    24487278    27762356    23542700    23758969    20809919    21993624    28528879   

EMBL

BABH01024130    NWSH01003211    PCG66766.1    ODYU01008143    SOQ51499.1    RSAL01000213    + More
RVE44166.1    KQ458859    KPJ04884.1    GAIX01013375    JAA79185.1    AGBW02008714    OWR52717.1    GDQN01006830    JAT84224.1    KK853123    KDR11092.1    GG694171    EFA13316.1    AJWK01017158    KQ980886    KYN11896.1    GANO01001443    JAB58428.1    GL437365    EFN70551.1    UFQS01000011    UFQT01000011    SSW97197.1    SSX17583.1    CVRI01000006    CRK87922.1    KQ976439    KYM86772.1    ADTU01018882    NNAY01000434    OXU28412.1    GL888406    EGI61488.1    GFDF01004973    JAV09111.1    PYGN01000578    PSN43948.1    GGFL01004369    MBW68547.1    GGFK01012029    MBW45350.1    KQ981693    KYN37813.1    CH477329    EAT43400.1    JXUM01094222    JXUM01095035    GAPW01004900    KQ564168    KQ564113    JAC08698.1    KXJ72644.1    KXJ72761.1    GAMD01002305    JAA99285.1    GGFJ01009844    MBW58985.1    ADMH02000060    GGFL01004381    ETN67955.1    MBW68559.1    GGFK01011847    MBW45168.1    GECU01012956    JAS94750.1    GGFM01005454    MBW26205.1    BC164958    AAI64958.1    BC095238    GECZ01023489    JAS46280.1    GBXM01014421    JAH94156.1    AHAT01010677    AAAB01008859    EAA08036.4    GL762838    EFZ20706.1    KQ977862    KYM99277.1    GL451188    EFN79804.1    GECL01000241    JAP05883.1    KK107231    QOIP01000009    EZA54977.1    RLU18597.1    GEBQ01012848    JAT27129.1    GBSH01001808    JAG67218.1    GBKD01001447    JAG46171.1    JU175252    GBEX01002243    AFJ50776.1    JAI12317.1    HADW01015931    HADX01005940    SBP17331.1    GFDF01005009    JAV09075.1    CM004472    OCT84474.1    BC076758    GDIP01043100    LRGB01000568    JAM60615.1    KZS17943.1    ACPB03002945    GAHY01001208    JAA76302.1    NEVH01010480    PNF32379.1    GDIQ01260276    JAJ91448.1    GAAZ01001622    GBKC01002385    JAA96321.1    JAG43685.1    GFDL01013400    JAV21645.1    HAEF01014406    SBR55565.1    HAEH01007274    HAEI01008768    SBS05934.1    HAED01015869    HAEE01004899    SBR24919.1    HADZ01011474    HAEA01005620    SBP75415.1    HAEB01007219    HAEC01011100    SBQ79316.1    HADY01008262    HAEJ01003842    SBP46747.1    GDIQ01152546    JAK99179.1    KL447356    KFO72588.1    AXCN02001614    DS231898    EDS44597.1    GGLE01004001    MBY08127.1    GBYX01169952    JAO88656.1    BC135468    AMGL01028337    AAGW02055507    GFJQ02003768    JAW03202.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000027135    + More
UP000007266    UP000192223    UP000092461    UP000078492    UP000000311    UP000183832    UP000002358    UP000078540    UP000005205    UP000215335    UP000007755    UP000245037    UP000079169    UP000078541    UP000008820    UP000069940    UP000249989    UP000000673    UP000261440    UP000000437    UP000261540    UP000018468    UP000075902    UP000007062    UP000075882    UP000076408    UP000075903    UP000078542    UP000008237    UP000257200    UP000257160    UP000265080    UP000075881    UP000053097    UP000279307    UP000261360    UP000261420    UP000192220    UP000075900    UP000265120    UP000264800    UP000192224    UP000186698    UP000076858    UP000015103    UP000235965    UP000002852    UP000075920    UP000053760    UP000075886    UP000085678    UP000261640    UP000002320    UP000008143    UP000002356    UP000261400    UP000001811    UP000261600   

PRIDE

H9ISA0    Q6DFH9   

Pfam

PF17833   UPF0113_N        + More
PF03657   UPF0113

Interpro

IPR036974   PUA_sf        + More
IPR015947   PUA-like_sf       
IPR040598   UPF0113_N       
IPR005155   UPF0113_PUA       
IPR002478   PUA       
IPR016686   Ribosomal_synth_fac_NIP7       

SUPFAM

SSF88697   SSF88697       

Gene 3D

2.30.130.10    

ProteinModelPortal

H9ISA0   A0A2A4J4V0   A0A2H1WEK7   A0A3S2NTI5   A0A194QHI8   S4NZI3   + More
A0A212FG66   A0A1E1WB68   A0A067QNL6   D7GXI8   A0A1W4X7P3   A0A1B0CLE1   A0A195DGC5   U5EUJ5   E2A7N0   A0A336JYL7   A0A1J1HK51   K7IVJ5   A0A195BM03   A0A158NKL5   A0A232FCQ2   F4WWE6   A0A1L8DRS9   A0A2P8YI85   A0A1S3DEV5   A0A2M4CT96   A0A2M4AX48   A0A195FBM5   Q17AX1   A0A023EH57   T1DP33   A0A2M4C101   W5JX16   A0A2M4AX45   A0A3B4DBE2   A0A1B6J6F3   A0A2M3ZCJ3   B2GR20   Q503P2   A0A1B6F7V8   A0A3B3Q8F5   A0A0E9WVC3   W5LZK7   A0A182U016   Q7QBV7   A0A182LFI9   E9IFF1   A0A182XVH7   A0A182VJN5   A0A151IEM7   E2BWU0   A0A3Q1ELP8   A0A3Q1BFU9   A0A3P8RVL8   A0A0V0GCP0   A0A182K7H0   A0A026WG02   A0A1B6LU25   A0A3B4WQ12   A0A3B4TBS0   A0A0B8RY13   A0A2I4CKG4   A0A0K8RYX1   J3SEX1   A0A1A7XGV5   A0A182RY97   A0A3P8VWI9   A0A3Q3B7H1   A0A1L8DRW8   A0A1W5B124   A0A1L8GKU2   Q6DFH9   A0A0P5ZLV8   R4FLY1   A0A2J7QUW8   A0A3B5Q778   A0A0P5FJS7   A0A3F2Z118   T1DM61   A0A1Q3F258   A0A1A8MF67   A0A1A8RKZ7   A0A1A8JZW5   A0A1A8C9L5   A0A1A8H528   A0A1A7ZV45   A0A0P5PBP6   A0A091FSJ8   A0A182Q4X4   A0A1S3HGN7   A0A3Q3MRB4   B0WDI8   A0A2R5LFL7   A0A0S7LGP5   A4QND5   W5P046   A0A3B5B069   G1TE50   A0A1Z5L753   A0A3Q3J499  

PDB

1T5Y     E-value=9.91258e-75,     Score=708

KEGG

101738785    K07565 60S ribosome subunit biogenesis protein NIP7 | (RefSeq) 60S ribosome subunit biogenesis prote

GO

GO:0042255   GO:0003723   GO:0005634   GO:0042254   GO:0042273   GO:0005730   GO:0030687   GO:0005829   GO:0005509   GO:0006816   GO:0016021   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

  

Length:

180

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.44456

Exp number, first 60 AAs:

0.000860000000000001

Total prob of N-in:

0.29898

outside

1  -  180

 

 

Pi

394.396097

Theta

202.187337

Tajima's D

3.014188

CLR

1.228315

CSRT

0.979801009949502

Interpretation

Uncertain