Silkworm Genome Informatics Database

Gene

KWMTBOMO14432

Pre Gene Modal

BGIBMGA000095

Annotation

PREDICTED:_calpain-A_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(-):5936797-5955063 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.055

CDS

ATGTTCAATTATTATCCGAAAAATTTCAAGGCCAACGGCTGGGGTTGGCACAGAACCGCGAACGCGGCTGCGGCTGTCAAAGGGTTTTTGAATAAGGAACGCGGCGAAGGGAGCTCCGAGCCGCTGATAGGCAACGGGAGCTTGTATCCCAAACTGCCAAGTGAAGATGATGCTTCGTTTAGTGGTGTCAAGTTGTATCCTGCTCTGCCGGCTGAGGAATATGAGAGCGGAGCTGTTGAGGAGGTGGTGGAAGAGGCTTGTGCCGCAGTGAACGTCCATGCTATGGTAGTAAGCAAAATATGA

Protein

MFNYYPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYPALPAEEYESGAVEEVVEEACAAVNVHAMVVSKI

Similarity

Belongs to the peptidase C2 family.

Uniprot

A0A212FG58 A0A2A4JSP8 A0A0L7L4Y9 A0A0L7KVM7 A0A194QH59 A0A2H1WEJ4 + More
A0A1E1WME5

Pubmed

22118469 26227816 26354079

EMBL

AGBW02008714 OWR52716.1 NWSH01000747 PCG74430.1 JTDY01002924 KOB70480.1 + More
JTDY01005350 KOB67089.1 KQ458859 KPJ04883.1 ODYU01008143 SOQ51498.1 GDQN01002865 JAT88189.1

Proteomes

UP000007151 UP000218220 UP000037510 UP000053268

Pfam

PF00648 Peptidase_C2

Interpro

IPR001300   Peptidase_C2_calpain_cat        + More
IPR038765   Papain-like_cys_pep_sf
IPR022684   Calpain_cysteine_protease
IPR000169   Pept_cys_AS

SUPFAM

SSF54001 SSF54001

CDD

cd00044 CysPc

ProteinModelPortal

A0A212FG58 A0A2A4JSP8 A0A0L7L4Y9 A0A0L7KVM7 A0A194QH59 A0A2H1WEJ4 + More
A0A1E1WME5

KEGG

100127019 K08585 calpain, invertebrate [EC:3.4.22.-] | (RefSeq) calpain protein

GO

GO:0004198

Length:

100

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00087

Exp number, first 60 AAs:

0.00087

Total prob of N-in:

0.35212

outside

1 - 100

Pi

34.19687

Theta

201.009603

Tajima's D

3.339681

CLR

0.217845

CSRT

0.991350432478376

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics