Silkworm Genome Informatics Database

Gene

KWMTBOMO14420 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000103

Annotation

PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_U-like_protein_2_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr24(-):5714986-5733653 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.991

CDS

ATGGATCCTGCTAAAATGAAGGTGGTGGACTTGAGGTCCGAGTTGGGTGCTCTCGGGTTAGATACGAAGGGAAACAAGCCGGCTTTGGTAGAAAGATTGAAAAAAGCACTCGAAGCGAAAACTGGAACAGCACTACCAGACAATTCAATATTAGATACCAGTACTGAAGAGACTGATGATCCAGGAACACCGCGTCGGCCGGCATCAAGAACCACTCGACGTTCCTCGTCTACTTCGAAACTAGCAGCCACACCAGCAAAGCCTGCAGACCCACCTGAGCCCATTCCGGAAGAAACTCGCAGTGACGGTGATGACCGCTACTCACCAAGCCTTGAGGAAGAATCAACTGAATCTCAACCAACTAAAGATGAACAGCTCGCAAAAGAGCCTAATAACAGAAATGAATCAGATGAACAGGAGGATGACAAAGCAATGGACACGCAAGAATCTACGGGTCCAGATGACGCAAAGAAACATACCGCTGAAACTATGGAGCATGACGGTGATGACACTGAAGCCAAAAAACAGAAGAATGAAGAAAGCAAAGAAGATAAAACAGAGAAAAATAAAGAGGAGCCCCGTGAGCTCACAGAAGAGGAAGAATGGGCTCAAATGAATGAACGGCTTCGAATCAGGGAACAGGAGAGACTTGAACGTGAAAAGAAGCAGGCTGAGGAAGATGCCAAGAAACTAGAAGAATTGAGTGATAACCCTGTCAAACTCCAGCGTTTGAAACGTAAATACGAGAAAAAAGCTAGATGGAGCAATTTCTATAAAACCGTTGAAGCCACTAATGAAATTTTGACGCCCCCAGAACCGCTTATTCGGAAAGAAGCAAAATCTGCCAACTCCAAAGAACAAGGTAAAGGGAAGAATAAGGATGCTCAACCTCCACCCGAGATAAGAGTTCCCGAACCTGAGCTTGACGATAACAAAGTCACTTTATCTTGGTATGACAGCGATCTCAACCAATACCTAGAGCTACCAGAACTGAACTCTGTTGTTCCACTCAGTGAAGGAGCCTTTTCGCACGCCTGGGCCGGAGCCAGAGCCACTCATGGGGTTGTTTCTGGACGAGTCGTCTATGAGGTGCGTGTCGGAGATGTTATGGCAACAACTGAAACTTCTGAAAAAGATGCGCTAACATCTGGAATAAGAATCGGCTGGTCCACAGACGACTCTTCCTTGCATCTTGGTGAAAGTGAGTTCAGTTGGGGCTTCGAGAGTACTGGCCGCATTGTCAATAATGGAGAATACAAAGAATACGGGAAATCGCTTAACGAAAAGGATGTTGTTGGTGCTTATTTGGACTTGGAGTCGGAGCCGTGTGTCGTGTCGTACACGCTCAACGGCGCGCCGCTCGGCACCGCCTTCGAGTTCCCGCGCAGCGCGCTGGGCGACCGCACGCTGTACCCGCACGTGCTCACCAAGAACATGTGCTACAAAGTCAACTTCGGATACGAACGTTACAACATGCTGTCAAAAACAAAAATAGTGCGGAAACGCATTGAAGTACCAGTCGAGCAAGTTTTAGAAGAAAAGAGGGTCATTGAAGAAGAAGTAAACCGTTTGAAAGAAGAAGCAAAGAGAAGAGAACGAGAGAGGAGAGAAAGAGAAAAATCAGACAGGGAGGAGAGACAGAAACGGAAACGTGAGGAACGTGAAAAGCAAGAGCGGGAAAAGAAAGAAAAGGAATTAGCAGAGAAACGCGAGAAAGGAGAAACATCAGAGAGTGAGAAAGATGCTGAGAAATCAGAAGAGAAAGAGGCAGAAGGTGAAAAAGATAAAACAGAAGCCGAACCTAAGGAAAATGGGGAGAATAAAACAGAAAAGAAAGATGATTCGAAACCTGAGCCAATGGAAACCGACGAGCCTCCCGCTGAATCCGGAGCCGCGCAACCCGCCGACCAGCCGCCCGCCAAGCCCGACGCTCCAGCAGCCGAGGGTGACGTACCCGAAGTGACAGCCGAGCAGGTCCTTGAGGGCCATGTATTGGACAAGAGAATTAAGTTTGTTATAAGATACCGCGTGGACGAGGAGCTGGACGGCCCGGAGGAGGCCAAGCTGCTGCCCGACTTCACGCTGCTGGCGCACGCGCAGCTGCAGCCCGGCCCCCGCCGCCCCCCGCAGCCCGAGGTGATCCTCATGGTGGGGCTGCCTGGATCTGGAAAGACCTACTGGGCCAAGAACCACTGCGACACAAACTTGGACAAACGCTACAACATTTTGTCTACTGGTGCTCTCTTTGATAAGATGAAGGTGGACTGTAAACCATTCCGCGCGACCTTCGAAGGCAGGTGGGACGCTATGGTCTCCAAGTGCGCTAAATGCGTGCTTAAATTGCTGGAATTTGCGCGTGACCGAAAAAGAAATTATATTTTAGATCAAACCAACGTATACCCGTCGGCTCAAAGACGCAAAATGAGAGAGTTCGAGGGATACCGACGCGTGGCCGTCTGCATACTGCCTCGCGACGAGCAGCGAGCCAGAGCTACCTCTTCCGACTCCAAGGACGTGCCAGACGCTGCGCTACTCGACATGAAAGCCAACTTCACCGCGCCCGAGAAGTGCTCTTGGATAGATGAGGTGATCTATCCGGAGCTACCTGAAGAAGAAGCCAAAGCCGCAATCGAGGCTTACCACAAGGAAGCGAAAGCGGCGGGCGCGGGCCGGGAGCGCGAGAAGCGGGAGCGCTCGGACGCGCGGGAGGGGCCGCCCGCCAAGCGCCCCCGGGAACACGACAAGCGACACGGCCGGGAGGACCGCGGCCGTCCGACGCGGGACTTCAGCCGGGACCGAGTACGGTAA

Protein

MDPAKMKVVDLRSELGALGLDTKGNKPALVERLKKALEAKTGTALPDNSILDTSTEETDDPGTPRRPASRTTRRSSSTSKLAATPAKPADPPEPIPEETRSDGDDRYSPSLEEESTESQPTKDEQLAKEPNNRNESDEQEDDKAMDTQESTGPDDAKKHTAETMEHDGDDTEAKKQKNEESKEDKTEKNKEEPRELTEEEEWAQMNERLRIREQERLEREKKQAEEDAKKLEELSDNPVKLQRLKRKYEKKARWSNFYKTVEATNEILTPPEPLIRKEAKSANSKEQGKGKNKDAQPPPEIRVPEPELDDNKVTLSWYDSDLNQYLELPELNSVVPLSEGAFSHAWAGARATHGVVSGRVVYEVRVGDVMATTETSEKDALTSGIRIGWSTDDSSLHLGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLDLESEPCVVSYTLNGAPLGTAFEFPRSALGDRTLYPHVLTKNMCYKVNFGYERYNMLSKTKIVRKRIEVPVEQVLEEKRVIEEEVNRLKEEAKRRERERREREKSDREERQKRKREEREKQEREKKEKELAEKREKGETSESEKDAEKSEEKEAEGEKDKTEAEPKENGENKTEKKDDSKPEPMETDEPPAESGAAQPADQPPAKPDAPAAEGDVPEVTAEQVLEGHVLDKRIKFVIRYRVDEELDGPEEAKLLPDFTLLAHAQLQPGPRRPPQPEVILMVGLPGSGKTYWAKNHCDTNLDKRYNILSTGALFDKMKVDCKPFRATFEGRWDAMVSKCAKCVLKLLEFARDRKRNYILDQTNVYPSAQRRKMREFEGYRRVAVCILPRDEQRARATSSDSKDVPDAALLDMKANFTAPEKCSWIDEVIYPELPEEEAKAAIEAYHKEAKAAGAGREREKRERSDAREGPPAKRPREHDKRHGREDRGRPTRDFSRDRVR

Uniprot

NA

ProteinModelPortal

NA

PDB

4XW3 E-value=2.5933e-08, Score=143

KEGG

101744691 K15047 heterogeneous nuclear ribonucleoprotein U-like protein 1 | (RefSeq) heterogeneous nuclear rib

GO

GO:0005515 GO:0016021 GO:0016758 GO:0001784 GO:0006816 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

935

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00003

outside

1 - 935

Pi

281.345025

Theta

201.583746

Tajima's D

1.092453

CLR

0.609099

CSRT

0.686115694215289

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	IEVPVEQVLEEK	100.00	6e-04
28556443	TLYPHVLTK	100.00	0.001
28556443	YMSSGPVVPMVWEGLNVVKTGR	100.00	0.016
28556443	YNILSTGALFDK	100.00	0.018

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics