Gene

KWMTBOMO14417  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000104

Annotation

coatomer_protein_complex_subunit_delta_[Bombyx_mori]

Location

Bomo_Chr24(-):5659891-5665433      View in EpiBrowser

Full name

Coatomer subunit delta      

Location in the cell

Nuclear   Reliability : 1.507

CDS

ATGGTACTTATAGCCGCTACAGTTTGTACGAAGTCAGGCAAAGCTCTGGTGTCCCGCCAGTTCGTCGAAATGACAAAAGCTCGCATCGAAGGTCTACTGGCGGCCTTCCCTAAACTAATGACAGGAGGACGGCAGCATACATTTGTAGAAACAGAGTCCGTCAGATATGTCTACCAGCCACTAGACAAGTTGTATATGTTACTGATCACGACAAAGGCTAGTAACATCCTGGAAGATCTGGAGACATTGAGACTCTTCAGCAGAGTGGTACCAGAATATTGTGTACAGCTCACAGAAACTGAAGTCTTGAACCAGGCCTTCAATTTGCTATTTGCTTTCGACGAGATTGTCGCTCTTGGGTACAGAGAAAGCGTCAATCTAGCGCAGGTCCGTTCGTTTGTTGAAATGGACTCTCACGAGGAAAAGATTTATCAAGCCGTAAGGCAGACCCAAGAACGCGAGGCAGCGAACCGCATGCGCGAACGCGCTAAGGAGTTGCAGCGTGAGAGATTGGAGGCGGCCAAACGTGGCCAGCCGCCGCGCTCACAGATGTCCTTCGGCAGTGGCTTTGGTAGCTCGACGATGTCCTCGTCGTCTCCATCTGAATCTATTGCCGAGAAGATTCCAACGACACCGGCCAGAGATACGTGA

Protein

MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQEREAANRMRERAKELQRERLEAAKRGQPPRSQMSFGSGFGSSTMSSSSPSESIAEKIPTTPARDT

Description

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Subunit

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.

Similarity

Belongs to the adaptor complexes medium subunit family. Delta-COP subfamily.
Belongs to the adaptor complexes medium subunit family.

Feature

chain  Coatomer subunit delta

Uniprot

D2Y4R5   H9IS78   A0A2H1WMY6   S4PM74   A0A2A4JU45   A0A194RJA1   + More
A0A212FA27   A0A1B6KL51   A0A1B6FY90   A0A1Y1MPI0   A0A194QHG6   A0A1A9UUJ8   D3TN53   A0A1A9WPL8   A0A1A9ZBH1   A0A1B6HIZ8   A0A034WWS1   A0A0K8VQJ7   A0A1B0AX84   A0A1A9XIS9   A0A1B0FH11   A0A0P5GYS5   A0A2J7RED7   W8C4F1   B4MT07   Q7K7G0   Q9W555   A0A0K8TP77   B4PY64   A0A3B0J8C6   A0A1J1J0Q7   B3P9M5   Q29HG5   A0A0Q5SU94   A0A0R1EF35   A0A1I8PCH3   T1IL15   R4WD35   A0A1S3DNU1   A0A1B6C3S5   E0VJS0   A0A336LRI8   V9IL68   A0A1B0CS10   B4GXR6   A0A0P4XTF2   B4JWZ1   A0A0N7ZB25   U5EYD0   A0A1L8DVU7   B3MR25   A0A2P6KY11   A0A182N2N7   Q16JS6   A0A088AGY8   A0A182RW76   A0A1W4VT13   B4NTW6   B4I9J0   A0A087UPE2   A0A1W4VFQ3   B4L843   A0A2M4BK28   A0A2M4BKV6   A0A2M3Z2U3   A0A2M4A4T3   A0A2M4BK50   A0A0L7RHL0   J3JWP1   A0A182VKV3   W5JHI0   T1PE78   A0A182WXW2   A0A182I5Y3   K7IN83   B4M2X9   A0A182JX92   A0A0P5WUB2   A0A1W4WI86   A0A182PD95   A0A1S4H4R7   A0A240PLG5   A0A224XLV0   A0A162SUV1   A0A0V0G5A6   A0A023F8Z5   A0A0P6IKY2   A0A069DZ65   A0A0P5P0Y6   A0A0N8D0W9   A0A0P6BY20   A0A0A9X5I5   T1EA65   R4G5L3   B0XDC3   A0A1Q3G2N7   A0A310S402   A0A0L0BU88   A0A0P5NIH1   A0A182U4B5  

Pubmed

20967265    19121390    23622113    26354079    22118469    28004739    + More
20353571    25348373    24495485    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26369729    17550304    15632085    23691247    20566863    17510324    22516182    23537049    20920257    23761445    25315136    20075255    12364791    25474469    26334808    25401762    26823975    26108605   

EMBL

GU322818    ADB66737.1    BABH01024107    BABH01024108    ODYU01009777    SOQ54430.1    + More
GAIX01003715    JAA88845.1    NWSH01000581    PCG75521.1    KQ460124    KPJ17632.1    AGBW02009528    OWR50592.1    GEBQ01027798    JAT12179.1    GECZ01014623    JAS55146.1    GEZM01025098    JAV87589.1    KQ458859    KPJ04864.1    EZ422855    ADD19131.1    GECU01033077    JAS74629.1    GAKP01000739    JAC58213.1    GDHF01011191    JAI41123.1    JXJN01005127    CCAG010009006    GDIQ01234399    JAK17326.1    NEVH01005277    PNF39202.1    GAMC01005554    JAC01002.1    CH963851    EDW75246.2    AE014298    AL024456    ACZ95179.1    CAA19661.1    AY051528    AAF45673.1    AAK92952.1    GDAI01001652    JAI15951.1    CM000162    EDX00937.1    OUUW01000003    SPP78427.1    CVRI01000066    CRL05983.1    CH954183    EDV45521.1    CH379064    EAL31793.3    KQS26000.1    KRK05842.1    JH430694    AK417174    BAN20389.1    GEDC01029151    JAS08147.1    DS235226    EEB13626.1    UFQT01000051    SSX19027.1    JR052822    AEY61800.1    AJWK01025548    AJWK01025549    CH479196    EDW27543.1    GDIP01236935    JAI86466.1    CH916376    EDV95267.1    GDRN01090496    JAI60464.1    GANO01000438    JAB59433.1    GFDF01003520    JAV10564.1    CH902622    EDV34230.2    MWRG01003715    PRD31210.1    CH477994    EAT34535.1    CH983367    EDX16413.1    CH480825    EDW43871.1    KK120865    KFM79231.1    CH933814    EDW05618.2    GGFJ01004285    MBW53426.1    GGFJ01004287    MBW53428.1    GGFM01002017    MBW22768.1    GGFK01002419    MBW35740.1    GGFJ01004286    MBW53427.1    KQ414591    KOC70288.1    BT127659    KB632005    AEE62621.1    ERL87931.1    ADMH02001177    ETN63827.1    KA647082    AFP61711.1    APCN01003537    CH940651    EDW65154.1    GDIP01082000    JAM21715.1    AAAB01008848    GFTR01006854    JAW09572.1    LRGB01000024    KZS21645.1    GECL01003607    JAP02517.1    GBBI01000781    JAC17931.1    GDIQ01002785    JAN91952.1    GBGD01001180    JAC87709.1    GDIQ01135132    JAL16594.1    GDIP01079695    JAM24020.1    GDIP01012676    JAM91039.1    GBHO01031244    GBRD01000064    GDHC01000214    JAG12360.1    JAG65757.1    JAQ18415.1    GAMD01000707    JAB00884.1    GAHY01000430    JAA77080.1    DS232752    EDS45401.1    GFDL01000983    JAV34062.1    KQ797310    OAD46964.1    JRES01001325    KNC23612.1    GDIQ01152182    JAK99543.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000078200    + More
UP000091820    UP000092445    UP000092460    UP000092443    UP000092444    UP000235965    UP000007798    UP000000803    UP000002282    UP000268350    UP000183832    UP000008711    UP000001819    UP000095300    UP000079169    UP000009046    UP000092461    UP000008744    UP000001070    UP000007801    UP000075884    UP000008820    UP000005203    UP000075900    UP000192221    UP000000304    UP000001292    UP000054359    UP000009192    UP000053825    UP000030742    UP000075903    UP000000673    UP000095301    UP000076407    UP000075840    UP000002358    UP000008792    UP000075881    UP000192223    UP000075885    UP000075880    UP000076858    UP000002320    UP000037069    UP000075902   

PRIDE

D2Y4R5    H9IS78    Q7K7G0    Q9W555   

Pfam

PF00928   Adap_comp_sub        + More
PF01217   Clat_adaptor_s

Interpro

IPR011012   Longin-like_dom_sf        + More
IPR028565   MHD       
IPR027059   Coatomer_dsu       
IPR036168   AP2_Mu_C_sf       
IPR022775   AP_mu_sigma_su       

SUPFAM

SSF49447   SSF49447        + More
SSF64356   SSF64356       

ProteinModelPortal

D2Y4R5   H9IS78   A0A2H1WMY6   S4PM74   A0A2A4JU45   A0A194RJA1   + More
A0A212FA27   A0A1B6KL51   A0A1B6FY90   A0A1Y1MPI0   A0A194QHG6   A0A1A9UUJ8   D3TN53   A0A1A9WPL8   A0A1A9ZBH1   A0A1B6HIZ8   A0A034WWS1   A0A0K8VQJ7   A0A1B0AX84   A0A1A9XIS9   A0A1B0FH11   A0A0P5GYS5   A0A2J7RED7   W8C4F1   B4MT07   Q7K7G0   Q9W555   A0A0K8TP77   B4PY64   A0A3B0J8C6   A0A1J1J0Q7   B3P9M5   Q29HG5   A0A0Q5SU94   A0A0R1EF35   A0A1I8PCH3   T1IL15   R4WD35   A0A1S3DNU1   A0A1B6C3S5   E0VJS0   A0A336LRI8   V9IL68   A0A1B0CS10   B4GXR6   A0A0P4XTF2   B4JWZ1   A0A0N7ZB25   U5EYD0   A0A1L8DVU7   B3MR25   A0A2P6KY11   A0A182N2N7   Q16JS6   A0A088AGY8   A0A182RW76   A0A1W4VT13   B4NTW6   B4I9J0   A0A087UPE2   A0A1W4VFQ3   B4L843   A0A2M4BK28   A0A2M4BKV6   A0A2M3Z2U3   A0A2M4A4T3   A0A2M4BK50   A0A0L7RHL0   J3JWP1   A0A182VKV3   W5JHI0   T1PE78   A0A182WXW2   A0A182I5Y3   K7IN83   B4M2X9   A0A182JX92   A0A0P5WUB2   A0A1W4WI86   A0A182PD95   A0A1S4H4R7   A0A240PLG5   A0A224XLV0   A0A162SUV1   A0A0V0G5A6   A0A023F8Z5   A0A0P6IKY2   A0A069DZ65   A0A0P5P0Y6   A0A0N8D0W9   A0A0P6BY20   A0A0A9X5I5   T1EA65   R4G5L3   B0XDC3   A0A1Q3G2N7   A0A310S402   A0A0L0BU88   A0A0P5NIH1   A0A182U4B5  

PDB

5NZV     E-value=1.77743e-67,     Score=646

KEGG

100379189    K20471 coatomer subunit delta | (RefSeq) COPD; coatomer protein complex subunit delta

GO

GO:0030126   GO:0000139   GO:0015031   GO:0006890   GO:0010883   GO:0007436   GO:0009306   GO:0035158   GO:0006810   GO:0016021   GO:0016758   GO:0001784   GO:0006816   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR10121  

Subcellular location

Cytoplasm  
Cytoplasmic vesicle  
COPI-coated vesicle membrane  
Golgi apparatus membrane  

Length:

216

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00525

Exp number, first 60 AAs:

0.00221

Total prob of N-in:

0.09328

outside

1  -  216

 

 

Pi

225.809405

Theta

168.606577

Tajima's D

1.073556

CLR

0.000001

CSRT

0.679766011699415

Interpretation

Uncertain