Gene

KWMTBOMO14415  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000122

Annotation

PREDICTED:_UPF0488_protein_CG14286_[Amyelois_transitella]

Location

Bomo_Chr24(+):5641584-5643646      View in EpiBrowser

Full name

UPF0488 protein CG14286      

Location in the cell

Nuclear   Reliability : 2.708

CDS

ATGCCTAAACCAACAAGATTGCACAATAAAGGCAAATCGACATCTTTACAGAAACCTTGTAAAATTGATAAACATGAGTCCGAAGGTGTAGACCCCGAGGAATCGTTACGACAGTTTCAGCTCGAGTTATGTTGGTGTATCCAACAGTTAGAGCGAACTTTAAATGAAAAGAAAGGAAACGAAAAACAATTGCAAGAAACATGGAAAGTCTTAACTGTACTGAAAAACAATAATCAGCCGATTATAAGGAAGAGACAATTAATGAGGACACATTTCGGTGATTATCGAGCTAAAATGGCTTCAGAGGAGAAAAAATTGTCTAAAAATGTACTGAGAATCACTTTGATATATGCCCGGATATGA

Protein

MPKPTRLHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKNVLRITLIYARI

Similarity

Belongs to the UPF0488 family.

Keywords

Complete proteome   Reference proteome  

Feature

chain  UPF0488 protein CG14286

Uniprot

H9IS95   A0A2H1WEK4   A0A2A4JVL8   A0A212FA35   A0A3S2LEI0   S4PTT2   + More
A0A194RJW8   A0A194QH77   A0A0L7LK32   A0A1E1VXM7   A0A1E1W7U7   B0X2T1   A0A1Q3F7B8   A0A0K8TR65   A0A182Q2C6   A0A240PKM7   A0A2M4AWB9   A0A2M4C059   A0A182WFB8   A0A2M4AWB7   A0A158NSE2   A0A2M4C0D0   A0A2M4BZM9   A0A2M4C0M9   A0A2M4AWQ7   A0A2M3ZCM6   A0A2M3ZCR4   A0A139WKF1   A0A139WKJ6   A0A2M3ZJP6   A0A182FTZ0   A0A0C9QCU8   W5JQR9   A0A336M2Z0   A0A182YNX3   E9IKN3   A0A0T6B9X4   E2BU23   A0A151WMQ9   F4W5M7   A0A1S3HX41   A0A1S3JJH6   A0A151IE36   E2AVU6   A0A1B0GPY8   A0A1B0CW46   A0A1I8N3T7   A0A151HY27   K7J9D2   N6TDA9   A0A034WUV9   A0A0K8VIE4   A0A0A1X259   A0A1A9WVR4   U5EZN2   B4ND43   A0A087ZNN4   Q9VE11   B4ILV9   A0A0M3QZU1   A0A1W4UPQ6   B3P384   B4PMQ5   B4QTW4   B4MGB6  

Pubmed

19121390    22118469    23622113    26354079    26227816    26369729    + More
21347285    18362917    19820115    20920257    23761445    25244985    21282665    20798317    21719571    25315136    20075255    23537049    25348373    25830018    17994087    10731132    12537572    17550304   

EMBL

BABH01024106    ODYU01008147    SOQ51508.1    NWSH01000581    PCG75523.1    AGBW02009528    + More
OWR50590.1    RSAL01000179    RVE44973.1    GAIX01011493    JAA81067.1    KQ460124    KPJ17630.1    KQ458859    KPJ04862.1    JTDY01000885    KOB75556.1    GDQN01011568    JAT79486.1    GDQN01008025    JAT83029.1    DS232298    EDS39405.1    GFDL01011584    JAV23461.1    GDAI01000987    JAI16616.1    AXCN02002034    GGFK01011775    MBW45096.1    GGFJ01009380    MBW58521.1    GGFK01011734    MBW45055.1    ADTU01024860    GGFJ01009450    MBW58591.1    GGFJ01009396    MBW58537.1    GGFJ01009397    MBW58538.1    GGFK01011889    MBW45210.1    GGFM01005556    MBW26307.1    GGFM01005534    MBW26285.1    KQ971326    KYB28459.1    KYB28460.1    GGFM01007971    MBW28722.1    GBYB01012228    JAG81995.1    ADMH02000770    ETN65099.1    UFQS01000117    UFQT01000117    SSW99978.1    SSX20358.1    GL764021    EFZ18882.1    LJIG01002832    KRT84108.1    GL450575    EFN80797.1    KQ982942    KYQ49081.1    GL887655    EGI70524.1    KQ977894    KYM98968.1    GL443213    EFN62368.1    AJVK01064480    AJWK01031750    KQ976730    KYM76477.1    APGK01034496    KB740914    KB632005    ENN78344.1    ERL87927.1    GAKP01000967    JAC57985.1    GDHF01013645    JAI38669.1    GBXI01009321    JAD04971.1    GANO01000476    JAB59395.1    CH964239    EDW82752.1    AE014297    BT023603    CH480892    EDW55435.1    CP012528    ALC49969.1    CH954181    EDV48536.1    CM000160    EDW95975.1    CM000364    EDX12387.1    CH940672    EDW57439.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053240    UP000053268    + More
UP000037510    UP000002320    UP000075886    UP000075880    UP000075920    UP000005205    UP000007266    UP000069272    UP000000673    UP000076408    UP000008237    UP000075809    UP000007755    UP000085678    UP000078542    UP000000311    UP000092462    UP000092461    UP000095301    UP000078540    UP000002358    UP000019118    UP000030742    UP000091820    UP000007798    UP000005203    UP000000803    UP000001292    UP000092553    UP000192221    UP000008711    UP000002282    UP000000304    UP000008792   

PRIDE

H9IS95    Q9VE11   

Pfam

PF15393   DUF4615        + More
PF15964   CCCAP
PF00856   SET
PF00587   tRNA-synt_2b
PF03129   HGTP_anticodon
PF02824   TGS
PF07973   tRNA_SAD

Interpro

IPR029274   DUF4615        + More
IPR031887   SDCCAG8       
IPR001214   SET_dom       
IPR012676   TGS-like       
IPR006195   aa-tRNA-synth_II       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       
IPR002314   aa-tRNA-synt_IIb       
IPR033728   ThrRS_core       
IPR004154   Anticodon-bd       
IPR004095   TGS       
IPR002320   Thr-tRNA-ligase_IIa       
IPR012675   Beta-grasp_dom_sf       
IPR036621   Anticodon-bd_dom_sf       
IPR012947   tRNA_SAD       

SUPFAM

SSF81271   SSF81271        + More
SSF55186   SSF55186       

Gene 3D

3.10.20.30     3.40.50.800    

CDD

cd00771  ThrRS_core

ProteinModelPortal

H9IS95   A0A2H1WEK4   A0A2A4JVL8   A0A212FA35   A0A3S2LEI0   S4PTT2   + More
A0A194RJW8   A0A194QH77   A0A0L7LK32   A0A1E1VXM7   A0A1E1W7U7   B0X2T1   A0A1Q3F7B8   A0A0K8TR65   A0A182Q2C6   A0A240PKM7   A0A2M4AWB9   A0A2M4C059   A0A182WFB8   A0A2M4AWB7   A0A158NSE2   A0A2M4C0D0   A0A2M4BZM9   A0A2M4C0M9   A0A2M4AWQ7   A0A2M3ZCM6   A0A2M3ZCR4   A0A139WKF1   A0A139WKJ6   A0A2M3ZJP6   A0A182FTZ0   A0A0C9QCU8   W5JQR9   A0A336M2Z0   A0A182YNX3   E9IKN3   A0A0T6B9X4   E2BU23   A0A151WMQ9   F4W5M7   A0A1S3HX41   A0A1S3JJH6   A0A151IE36   E2AVU6   A0A1B0GPY8   A0A1B0CW46   A0A1I8N3T7   A0A151HY27   K7J9D2   N6TDA9   A0A034WUV9   A0A0K8VIE4   A0A0A1X259   A0A1A9WVR4   U5EZN2   B4ND43   A0A087ZNN4   Q9VE11   B4ILV9   A0A0M3QZU1   A0A1W4UPQ6   B3P384   B4PMQ5   B4QTW4   B4MGB6  

KEGG

101745827    K13168 splicing factor, arginine/serine-rich 16 | (RefSeq) CLK4-associating serine/arginine rich pro

GO

GO:0005814   GO:0007098   GO:0031023   GO:0001764   GO:0030010   GO:0035148   GO:0005813   GO:0005524   GO:0006435   GO:0004829   GO:0005737  

PANTHER

PTHR13602   PTHR34343   PTHR11451  

Length:

120

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.38713

outside

1  -  120

 

 

Pi

297.617833

Theta

228.45688

Tajima's D

0.883301

CLR

0.000006

CSRT

0.627668616569172

Interpretation

Uncertain