Gene

KWMTBOMO14410  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000119

Annotation

PREDICTED:_porphobilinogen_deaminase_[Papilio_xuthus]

Location

Bomo_Chr24(+):5607724-5613940      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.996

CDS

ATGGACGGTGAAACGAAACTAAGCATTCACGTCGGCTCCAGGAAGAGCGAGCTAGCACTTGTACAAACGAATTTCGTTATCGATAGCTTAAAAAGAAATTACCCGGAAAAGGAATTTAAAATTGTGACCATGACAACGCTTGGCGACAGGGTGCTAGATCAGCCTCTACCAAAAATAGGAGAAAAGTCACTTTTCACAAAAGACTTAGAAGATGCACTGATGAGTAAAAATGTAGATTTTGTTGTGCATTCACTGAAAGACTTGCCAACAACATTGCCGGACGGATTAGTCATTGGCGCTGTCTTTGAAAGAGAAGACCCTCGTGATGCTTTGGTACTGAACGAAAAATTTAAGGAGTACTCATTGTCCACCTTACCTTCAGGATCAGTAATAGGAACATCATCACTGAGACGAACGGCTCAGCTAAACGGAAACTATCCCCAGTTGAAGGTGGTGGATGTGAGAGGCAATCTTAATACCAGGTTGAGGAAATTGGATGACGAAGATGGAAAATATTCAGCCCTTATACTGGCAAGTGCTGGGTTGAGTAGAATGGGATGGGGCAACAGAATGTCAAAGGTACTGCCGTGCTCGGAGATGTTATATGCGGTGGGTCAGGGCGCGTTGGCGGTGGAATGTCGCGCTGACAATGAAGAAGTCCTGGCGATGTTGGCTCCGTTCAACCACCCTGAAACTTACTGCAGGGTCTTGGCTGAGAGGAGTTTCCTAAAAACTTTAGGTGGTGGATGCAGCGCTCCGGTAGGTATATCAACAAAACTAAAACAAAACGATAATGTATACAAGCTCACTTTGACCGGAGCCGTCTGGAGTCTAGACGGTTCGACCAAACTCGAGGAAACGTTGGACCAAACGTTTGGGCAAATACGTAAAACCGTTAAACACAAACTCAGTCCGACGGAAGAAGCGAGCAGCAAAAAAATTAAAACCGACAAAACAGTTGAAGCCGACAATGAAATCGCCGTACTTAATCGACGGATCACCGACAAGACTGGTGATTTGGGCTGCGAAGATTTGGCGCCAAATGTCGCTGACAGACGCTGCTTCTGCGGTTTGACGACCAACGTCAATATGCCAATTGACGTTGTCATCAAATGTGATAATTTAGGTAGGGACTTGGCGAATTCGTTAATCGATAAAGGTGCTTTAGAGGTGATGAAGATATCACATGACATAATCAGAAGTTCGATTGGTAAAAAATCATGA

Protein

MDGETKLSIHVGSRKSELALVQTNFVIDSLKRNYPEKEFKIVTMTTLGDRVLDQPLPKIGEKSLFTKDLEDALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFEREDPRDALVLNEKFKEYSLSTLPSGSVIGTSSLRRTAQLNGNYPQLKVVDVRGNLNTRLRKLDDEDGKYSALILASAGLSRMGWGNRMSKVLPCSEMLYAVGQGALAVECRADNEEVLAMLAPFNHPETYCRVLAERSFLKTLGGGCSAPVGISTKLKQNDNVYKLTLTGAVWSLDGSTKLEETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVLNRRITDKTGDLGCEDLAPNVADRRCFCGLTTNVNMPIDVVIKCDNLGRDLANSLIDKGALEVMKISHDIIRSSIGKKS

Uniprot

H9IS92   A0A3S2NDX7   A0A194QH33   A0A2A4JUN9   A0A2H1WSS2   A0A212FA34   + More
A0A1B6LZS6   A0A1B6EJB0   V5GX26   A0A1B6D9V3   J9K6V0   A0A2H8TQ12   A0A1Y1LL53   A0A2S2RAS4   W8B9N7   A0A1I8MZD9   T1PBM0   B4HVS3   B3M516   A0A2J7RE79   A0A034WJ22   A0A1W4W5Y3   A0A0M5J056   A0A0K8WC50   Q9W0G4   B4PD78   A0A0A1XIU8   B4QM08   A0A232F4J1   A0A1I8Q077   A0A1Q3G1Z3   A0A1Q3G1K5   A0A3L8DV68   B3NB99   B4KY05   B4N3A3   A0A1Q3G1I6   A0A1J1J529   A0A0K8TSR8   A0A3B0JYY7   U5EPV1   B4LG64   Q29EW7   A0A1B0FG25   A0A2M4A896   A0A088ALA1   A0A2A3ETM6   A0A182QUV5   B4IXG6   A0A1B0ANK3   A0A2M4A503   A0A2M4A5E0   A0A182JS32   A0A2M4CIQ7   A0A2M4BGY7   A0A2M4BGY4   A0A2M3Z6X0   A0A084WLV2   A0A0A9X341   A0A2M3Z6B8   A0A2M3Z615   A0A2M3Z640   A0A2M3Z8R1   A0A182NSX9   A0A2M4CR78   A0A182YAU3   A0A2M4CRD1   A0A182RD70   A0A182MF69   B4H5M2   A0A2R7VY17   A0A182WUD9   A0A1S4H6K0   A0A182UV24   A0A182KKT1   A0A182HW36   A0A182WDS5   A0A1A9ZBT7   A0A1S3D3D3   F4X8M7   A0A0P4VJZ0   E2A1J7   T1HIA9   A0A0P5P2Q2   A0A162SUT7   A0A182FTL6  

Pubmed

19121390    26354079    22118469    28004739    24495485    25315136    + More
17994087    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25830018    22936249    28648823    30249741    26369729    15632085    24438588    25401762    26823975    25244985    12364791    20966253    21719571    27129103    20798317   

EMBL

BABH01024104    BABH01024105    BABH01024106    RSAL01000179    RVE44968.1    KQ458859    + More
KPJ04853.1    NWSH01000581    PCG75519.1    ODYU01010731    SOQ56022.1    AGBW02009528    OWR50583.1    GEBQ01010788    JAT29189.1    GECZ01031750    JAS38019.1    GALX01003608    JAB64858.1    GEDC01014898    JAS22400.1    ABLF02014710    GFXV01004482    MBW16287.1    GEZM01054541    JAV73568.1    GGMS01017954    MBY87157.1    GAMC01016669    JAB89886.1    KA646161    AFP60790.1    CH480817    EDW50038.1    CH902618    EDV39495.1    NEVH01005277    PNF39142.1    GAKP01003376    GAKP01003374    JAC55576.1    CP012525    ALC42998.1    GDHF01003675    JAI48639.1    AE014296    BT023907    BT050461    AAF47484.1    ABA81841.1    ACJ13168.1    CM000159    EDW92826.1    GBXI01003834    JAD10458.1    CM000363    CM002912    EDX08794.1    KMY96806.1    NNAY01001035    OXU25400.1    GFDL01001232    JAV33813.1    GFDL01001360    JAV33685.1    QOIP01000004    RLU24103.1    CH954178    EDV50152.1    CH933809    EDW18707.1    CH964062    EDW78842.1    GFDL01001406    JAV33639.1    CVRI01000072    CRL07515.1    GDAI01000196    JAI17407.1    OUUW01000012    SPP87264.1    GANO01003557    JAB56314.1    CH940647    EDW69372.1    CH379070    EAL29942.2    CCAG010003862    GGFK01003639    MBW36960.1    KZ288189    PBC34566.1    AXCN02002132    AXCN02002133    CH916366    EDV96403.1    JXJN01000881    GGFK01002556    MBW35877.1    GGFK01002527    MBW35848.1    GGFL01001048    MBW65226.1    GGFJ01003179    MBW52320.1    GGFJ01003178    MBW52319.1    GGFM01003525    MBW24276.1    ATLV01024293    ATLV01024294    KE525351    KFB51196.1    GBHO01032079    GBRD01001003    GDHC01017752    JAG11525.1    JAG64818.1    JAQ00877.1    GGFM01003294    MBW24045.1    GGFM01003199    MBW23950.1    GGFM01003235    MBW23986.1    GGFM01004134    MBW24885.1    GGFL01003658    MBW67836.1    GGFL01003657    MBW67835.1    AXCM01016885    CH479211    EDW33074.1    KK854163    PTY12396.1    AAAB01008816    APCN01001462    GL888932    EGI57296.1    GDKW01002023    JAI54572.1    GL435766    EFN72670.1    ACPB03006711    GDIQ01155326    GDIP01060317    JAK96399.1    JAM43398.1    LRGB01000024    KZS21644.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000218220    UP000007151    UP000007819    + More
UP000095301    UP000001292    UP000007801    UP000235965    UP000192221    UP000092553    UP000000803    UP000002282    UP000000304    UP000215335    UP000095300    UP000279307    UP000008711    UP000009192    UP000007798    UP000183832    UP000268350    UP000008792    UP000001819    UP000092444    UP000005203    UP000242457    UP000075886    UP000001070    UP000092460    UP000075881    UP000030765    UP000075884    UP000076408    UP000075900    UP000075883    UP000008744    UP000076407    UP000075903    UP000075882    UP000075840    UP000075920    UP000092445    UP000079169    UP000007755    UP000000311    UP000015103    UP000076858    UP000069272   

PRIDE

H9IS92    Q9W0G4   

Pfam

PF01379   Porphobil_deam        + More
PF03900   Porphobil_deamC
PF07534   TLD

Interpro

IPR022418   Porphobilinogen_deaminase_C        + More
IPR036803   Porphobilinogen_deaminase_C_sf       
IPR022417   Porphobilin_deaminase_N       
IPR000860   HemC       
IPR022419   Porphobilin_deaminase_cofac_BS       
IPR006571   TLDc_dom       

SUPFAM

SSF54782   SSF54782       

Gene 3D

3.30.160.40    

ProteinModelPortal

H9IS92   A0A3S2NDX7   A0A194QH33   A0A2A4JUN9   A0A2H1WSS2   A0A212FA34   + More
A0A1B6LZS6   A0A1B6EJB0   V5GX26   A0A1B6D9V3   J9K6V0   A0A2H8TQ12   A0A1Y1LL53   A0A2S2RAS4   W8B9N7   A0A1I8MZD9   T1PBM0   B4HVS3   B3M516   A0A2J7RE79   A0A034WJ22   A0A1W4W5Y3   A0A0M5J056   A0A0K8WC50   Q9W0G4   B4PD78   A0A0A1XIU8   B4QM08   A0A232F4J1   A0A1I8Q077   A0A1Q3G1Z3   A0A1Q3G1K5   A0A3L8DV68   B3NB99   B4KY05   B4N3A3   A0A1Q3G1I6   A0A1J1J529   A0A0K8TSR8   A0A3B0JYY7   U5EPV1   B4LG64   Q29EW7   A0A1B0FG25   A0A2M4A896   A0A088ALA1   A0A2A3ETM6   A0A182QUV5   B4IXG6   A0A1B0ANK3   A0A2M4A503   A0A2M4A5E0   A0A182JS32   A0A2M4CIQ7   A0A2M4BGY7   A0A2M4BGY4   A0A2M3Z6X0   A0A084WLV2   A0A0A9X341   A0A2M3Z6B8   A0A2M3Z615   A0A2M3Z640   A0A2M3Z8R1   A0A182NSX9   A0A2M4CR78   A0A182YAU3   A0A2M4CRD1   A0A182RD70   A0A182MF69   B4H5M2   A0A2R7VY17   A0A182WUD9   A0A1S4H6K0   A0A182UV24   A0A182KKT1   A0A182HW36   A0A182WDS5   A0A1A9ZBT7   A0A1S3D3D3   F4X8M7   A0A0P4VJZ0   E2A1J7   T1HIA9   A0A0P5P2Q2   A0A162SUT7   A0A182FTL6  

PDB

5M7F     E-value=7.91539e-85,     Score=800

KEGG

101736648    K01749 hydroxymethylbilane synthase [EC:2.5.1.61] | (RefSeq) porphobilinogen deaminase

PATHWAY

00860    Porphyrin and chlorophyll metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0033014   GO:0004418   GO:0018160   GO:0001784   GO:0006816   GO:0016021   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR11557  

Length:

407

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00713

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00702

outside

1  -  407

 

 

Pi

291.409772

Theta

179.052906

Tajima's D

2.199483

CLR

0.018732

CSRT

0.914454277286136

Interpretation

Uncertain