SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14405
Pre Gene Modal
BGIBMGA000110
Annotation
PREDICTED:_serologically_defined_colon_cancer_antigen_8_homolog_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.634
 

Sequence

CDS
ATGAATGATTATGGATTGAAACGGATCCCGGATTATACGGAGCTGGCTTACAAGGAGGCTGTTTCGAAGCTGAGATACTTCTTATCGGGAAACTACGCGCCTTCTGCTCGCAGTTACGGAGGTTCTGCTTCGATAAAGAATCTCGACGAATCCGATGGGGATCTGGACAAGAAATATTCTAGTTCGTACAACGCCGTCGGCGACTTCAAGCCGAAGCCGAGACTTACCGCCAAGTATGCCACTCTTTATGCCGACAGCTTGAAGAACTACACGCCCGAACCTGTCAATGTTCCTACGTCGGCTGGGGCTGGAGATTCGTCGACCGCGAACCCTGACGTCATCAATTTCATACATAAACAGGAAGAGTACATCGAGCAATTAGAAAGGGAGAGTCAGTATTGCAGGGACGAATTGAACAATCTACTCGGTAAAGTGAAGGAAGTGATCTCGGAGAACGAGCATCTGCACGAAGCCCAGAAGAACAAGTTGATTTCTAGAATGTTCCATTCGTACAATGGCTCCGAAACTGATGACGTCGACGACAGCACCGGTCTCGACAGTGACAATAAGACAAGCCCATCGAAAGCTCGGAAGACGTCTAAAGCCCGTGGTACGAGACTTGAAGGTCCCAACATCGTCTTCGAGTCCCGCATCGCAGAACTGGAAGCTCAACTAACTCAGTCCAAGATCGACTTGAAGAAGCTGCAGTAG
Protein
MNDYGLKRIPDYTELAYKEAVSKLRYFLSGNYAPSARSYGGSASIKNLDESDGDLDKKYSSSYNAVGDFKPKPRLTAKYATLYADSLKNYTPEPVNVPTSAGAGDSSTANPDVINFIHKQEEYIEQLERESQYCRDELNNLLGKVKEVISENEHLHEAQKNKLISRMFHSYNGSETDDVDDSTGLDSDNKTSPSKARKTSKARGTRLEGPNIVFESRIAELEAQLTQSKIDLKKLQ

Summary

Similarity
Belongs to the globin family.
EMBL
BABH01024086    BABH01024087    BABH01024088    BABH01024089    AGBW02008471    OWR53269.1    + More
RSAL01000179    RVE44965.1    KQ458859    KPJ04856.1    KQ460124    KPJ17623.1    KK852984    KDR12857.1    PYGN01001512    PSN34350.1    NEVH01016304    PNF25778.1    PNF25780.1    PNF25776.1    KB632195    ERL89952.1    APGK01026643    KB740635    ENN79895.1    KQ971326    KYB28460.1    KYB28459.1    GECZ01010555    JAS59214.1    GECU01001339    JAT06368.1    GECU01033331    JAS74375.1    GECU01015690    JAS92016.1    GECU01004861    JAT02846.1    GECU01026546    JAS81160.1    GL448181    EFN85216.1    DS235100    EEB11965.1    KQ977513    KYN02166.1    KQ982612    KYQ53869.1    KQ434899    KZC10941.1    GL888206    EGI65181.1    KK107078    EZA60458.1    GL439967    EFN66492.1    KQ981701    KYN37496.1    JTDY01005066    KOB67407.1    KQ976453    KYM85341.1    QOIP01000011    RLU16626.1    ADTU01008610    KQ979480    KYN21282.1    CH940650    EDW66744.2    CH902617    KPU80313.1    CH954181    EDV49077.1    CH933806    EDW15116.2    AE014297    AHN57347.1    EDV43554.1    KPU80312.1    CH480815    EDW41985.1    AHN57345.1    AHN57343.1    AHN57344.1    CM000364    EDX12755.1    BT010273    AAQ23591.1    ABW08684.1    AHN57346.1    AAF55249.2    AAF55250.2    CM000160    KRK03718.1    CH964232    EDW81066.2    KRK03720.1    EDW97388.2    KRK03719.1    AXCM01004280    DS232752    EDS45403.1    AXCN02001080    ADMH02001177    ETN63829.1    ATLV01024620    KE525353    KFB51799.1    APCN01003537    GEDC01026072    JAS11226.1    CH916373    EDV94942.1    NNAY01003801    OXU18839.1    JXJN01011710    JXJN01011711    CH477994    EAT34532.1    GANO01003837    JAB56034.1    JXUM01034368    JXUM01034369    JXUM01034370    KQ561021    KXJ79997.1    AJVK01007785    AJWK01017052    AJWK01017053    AJWK01017054    LJIJ01000274    ODM99517.1    CCAG010013864    CM000070    KRT00706.1    EIM52789.2    KRT00705.1    KRT00707.1    CH479182    EDW34141.1   
Pfam
PF15964   CCCAP        + More
PF15393   DUF4615
PF10441   Urb2
PF00042   Globin
Interpro
IPR031887   SDCCAG8        + More
IPR029274   DUF4615       
IPR018849   Urb2/Npa2_C       
IPR012292   Globin/Proto       
IPR000971   Globin       
IPR009050   Globin-like_sf       
SUPFAM
SSF46458   SSF46458       
Gene 3D

Ontologies

Topology

Length:
236
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0005
Exp number, first 60 AAs:
0.0005
Total prob of N-in:
0.07934
outside
1  -  236
 
 

Population Genetic Test Statistics

Pi
315.736384
Theta
169.705303
Tajima's D
3.291474
CLR
0.172201
CSRT
0.988950552472376
Interpretation
Uncertain
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