SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14396
Pre Gene Modal
BGIBMGA000115
Annotation
PREDICTED:_BUD13_homolog_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 4.593
 

Sequence

CDS
ATGGCTACGACTGTAAACCAGAAAGCGTACTTGCAAAAATACCTGGCTGGTCCATCGGGCGATAAAAAGAAAAAGAAAAAAAAAGTGCTAAAAGGAAAAGGGTTCAAAATAATAGACGATGACATTGACCTATCGAAGCTACGACCCCTTGAGGGTGACGAGTTAGATGTGTATGATGAAGGTGATGACGCACCGCAAGTAGCAGGTATCATCGATGAAAGACCAGAGCATATAAAAAAACAGGAACAATTCACCACTAGTTCTAAATGGAAGATCGTGAATCAGGATGACGGATTCAACAGCAAACTACAAATTGAAGAGATAAAGAAAGATGTAAAGGAAACCGAGAAAGAAAACGAATTGGTCTTTGGAAAAATGTACAGTGATTCCGAAGATGATAAGCCAAATGTTTCAGAAGCTTCGCCGTCTGGAAGAGCTAAAAGCAAAAAAAAACACAACAGTGACAGCGACTTCAGCCCACCAAGAAGAGGGAATCCAGTGAAAAGGAATAATTCTCCTAAAAGAACTACTGAATATGATTCTGATCTTTCACCACCTAGAAAGCATGAGGGTCAGAGAGCTGAAAAACTTAAAAAACCAAGTCGTTGGGACAATGAGAAGGATAAGTCACCAAAGTCTTTAAGAGCTAATAACCACAGAAGATCTAAGAGCTCTGATTTGTCTCCTCTAAGGAAAACCCAAATGAATAAGATTTCTTCAGGACAAGATATGAAAATTCAAAAAAGATATGATGTGACATCTCCCAGAAAATCTAGAAAAGATGATTCAAAACGAAATAGACTTAACTCAGTTTCACCTCCGAGGCGAAAAAAATCCCCAGAGAAATCTAAATTTGGTCACGATAACAGACAGAGCCAGTTAAAAAAGTATAATGATACAGATTATGGTTCGAGGTATGACAAAAGATCTAACAGATCAAATTCAGATTCTGATATGTCTCCCCCAAGAAAGAGTAAGAGACAAATCTCAGAATCTCCCTGTAGAAATGTTCCACTAAGAAAAAAAACGAATGATAGTGATTCAGATTTATCTCCTCCCCGTAAAAATATAAGATATGCAGAAAACAAGTCCTATAGGAATGTAAGCAAAAAACCTCACAGGAGGAATGACACAAAAGACAGTGGTTCGGATTTATCACCACCGCGAAAGCTTAAGAATATAGATAACTACAGAAGGCATGACTCTGAACGTAAAAGAAAAGACAGAAGTTCAAAAAGAAATAATAGCGATTCTGATCTTTCTCCTCCTAGGAAAGATAGGTCTAACAAGAATGACAGTCCCCCTCCAACCCATAAAAAAATGGAGAAGACTTTGGAAGGAAAGAAAGCAGGATTACAAGATGCCAAGCAGCTGAGGCAAGAAAACGATGACTTTAGAAAGAAAGAAGAGGAGATGTTTAAGAAAATGAAAGATGATGTTTCAGGCAGGAATGCTCAAGTTGTGTCAAGGAAAGGTTAG
Protein
MATTVNQKAYLQKYLAGPSGDKKKKKKKVLKGKGFKIIDDDIDLSKLRPLEGDELDVYDEGDDAPQVAGIIDERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIEEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSDFSPPRRGNPVKRNNSPKRTTEYDSDLSPPRKHEGQRAEKLKKPSRWDNEKDKSPKSLRANNHRRSKSSDLSPLRKTQMNKISSGQDMKIQKRYDVTSPRKSRKDDSKRNRLNSVSPPRRKKSPEKSKFGHDNRQSQLKKYNDTDYGSRYDKRSNRSNSDSDMSPPRKSKRQISESPCRNVPLRKKTNDSDSDLSPPRKNIRYAENKSYRNVSKKPHRRNDTKDSGSDLSPPRKLKNIDNYRRHDSERKRKDRSSKRNNSDSDLSPPRKDRSNKNDSPPPTHKKMEKTLEGKKAGLQDAKQLRQENDDFRKKEEEMFKKMKDDVSGRNAQVVSRKG

Summary

Pfam
PF09736   Bud13        + More
PF10239   DUF2465
Interpro
IPR018609   Bud13        + More
IPR018797   FAM98       
PDB
6FF7     E-value=8.24308e-05,     Score=110

Ontologies

Topology

Length:
492
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01949
outside
1  -  492
 
 

Population Genetic Test Statistics

Pi
219.174012
Theta
194.453631
Tajima's D
0.209837
CLR
0.556415
CSRT
0.427328633568322
Interpretation
Uncertain
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