Gene

KWMTBOMO14385

Pre Gene Modal

BGIBMGA013290

Annotation

PREDICTED:_irregular_chiasm_C-roughest_protein-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(-):4769226-4811593      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.667

CDS

ATGGAGCCGCAAGATCAGAGTGCGATAGTGGGATCGCGAGTCACTCTGCCCTGTCGAGTGGAGAACAAGGCTGGGGCGCTTCAGTGGACGAAAGACGACTTCGGGCTCGGCACACACCGGAACCTGAGCGGTTATGACAGATACTCCATGATCGGAAGCGACGAGGAAGGAGATTTCTCCCTCGATATACGAGACGTTACTTTAGAAGATGACGGAAGGTACCAATGCCAAGTTAGTGGCGGGCTAAATGGAGAGCCGGCGATCCGATCGCGGTACGCAAAACTGACAGTCCTAGTAGCTCCTGAGCCTCCGAGGATAATTCAAGGTGCCTTCGTAGAAGCAACGGAAGGTCAATCTCTTGATATCGAATGCGAATCCGTAGGTGGAAAACCGGCTGCCGAGATAACTTGGCTGGACGGTAACCAAGCTGTGGTGAAGAAGAACGTGAAGAGTAAATTGGAGTTGATGGCAGATGGACAAAGATACAAAACAAGGTCGGTTTTGCGGTTGAACCCGAGCAAGGCGTACCACAACCAGACATTCACCTGCCAAGCCCAGAACACAGCTGACAGAGCGCCGAGGATGGCTACGATACATTTTGAGGTGAAATACGTCCCGAAAGTGAATATATCGTTCAGGTCTGGCGTGATCGACGGTAAGATACCGGAGGGTAATGAAGCAAGGATACGGTGTAGCTCCGAATCGAATCCTCCCCCCCGGGCCCACAGGTGGTACATCAACAACAACCCGGTCATAGGAGACTACACTGACGAGATGATTATTTTCAACGTCACAAGGAAACATAACAAGGCTGAAGTGAGATGCGAAATCAGCAATACTGTGGGCACGAGCTCGGCAAAAGTTACACTGAACGTTGCATATCCTCCAATTTTCCGCAATCATCTGCATGACGTCGAGGCGGATATCGGCTCGATTGTGACCCTTAGCTGTGACGTTGATGGGCAGCCGAAGCCGGCGATCAGGTGGCTTCTGAACGAGCCTGGCAGGATCGGGGTTAAAGGAAAATCCCCGAACTTGGAGATAGTTGTGAACAAAGAAACGGCAGGAAAATATATCTGCAAAGCGAGTGTCACCGGATACCCAGAAATCGAGAGTGAAGCTACTGTTTTTATTAAAGGAGCTCCAAAGATAATTTCGAATAGGACTCAGATAGGCGCGGAAGGGGAGACGGTTACAGTTGAATGCCTGACAGAGTCTGTTCCCAAGCCAGACTTCATCAAATGGTTCTTCGAAGGTCGGGAGATCAGTGTGATACAGGATCCGAATTACGCGATACTGCAAGAATCATTGCCCGATGGACTAGTTAAATCTAGTTTGGTGATCAAGGCTAGCCAGTCAAGGCATTTTGGACTTTACAACTGCAGCGTTACGAACGAATACGGTAACGCAAACGCACCGATAATGTTGAAGCCTTTAAAGACCCTTCCACTGTACATAATCCTCATCGGGGTTACGACCGGCATCGTCGTCTTCTCCTCCTTCATAATTCTCCTCGTGGTCTGCCACAGGAGAAGAAGGAAGAAGAGTCAAATGAACGAGAAGCCGGACGTGACCGTCGCGACCGGAGACGCGTACAAAGAGAGCGACAGGAGCTCTAACATCAGCGACCTGAAGCTTCAGTTGCCGCAGAGCGACGCCAGCTACGACCTGGATTACACGAGCTCTGATCGCTCGGACACCAAGGCGCCGGTAGGGCTTCCCCTGGCTGGTCCGGTACCTCTACCTAACATCAGACTAGACGACTTCAATTACAACAATGACTATACTGACCCCGCTTACCACGACTATGGTTATAAGACTCCAGCCGGGTTCGTGTACGACTACCCGCACGGCTACTCGCCCCCGGCGCACCTGCACGTGCATTCCCCCCCGCCGCACGCCAGGTCGCAACAGGGATCTTTGACGCGCAGTATAGACACGGCGTCGACTCTCCCATTGTCAAACAGCAATGGATCGCAAAATAATACGTTGCAACGAACGAACAAGCCCGAGGAAAGCGACGCCATCAACAATTTAGGTCTACCCTCTGGTGGAGAGGCAGGTCCACAAACGCCAATCTATGCGCAACCGAACCCTAGACCGCAGACTGCAGTCGACCCGCGGTACTCGGCTACCTACGGTAATCCATACTTAAGGAATAGTTCAATAGGTTACGGGAATCAGGTGCACACGGCGAAGCCCGCGGCCACGCCCGCACCGCCGCCATACTCCGCCGTCAGGAATTCCGCACCGACAGGTAATGGCGGTCCCGCCCAGGCCACCCACGTGTAG

Protein

MEPQDQSAIVGSRVTLPCRVENKAGALQWTKDDFGLGTHRNLSGYDRYSMIGSDEEGDFSLDIRDVTLEDDGRYQCQVSGGLNGEPAIRSRYAKLTVLVAPEPPRIIQGAFVEATEGQSLDIECESVGGKPAAEITWLDGNQAVVKKNVKSKLELMADGQRYKTRSVLRLNPSKAYHNQTFTCQAQNTADRAPRMATIHFEVKYVPKVNISFRSGVIDGKIPEGNEARIRCSSESNPPPRAHRWYINNNPVIGDYTDEMIIFNVTRKHNKAEVRCEISNTVGTSSAKVTLNVAYPPIFRNHLHDVEADIGSIVTLSCDVDGQPKPAIRWLLNEPGRIGVKGKSPNLEIVVNKETAGKYICKASVTGYPEIESEATVFIKGAPKIISNRTQIGAEGETVTVECLTESVPKPDFIKWFFEGREISVIQDPNYAILQESLPDGLVKSSLVIKASQSRHFGLYNCSVTNEYGNANAPIMLKPLKTLPLYIILIGVTTGIVVFSSFIILLVVCHRRRRKKSQMNEKPDVTVATGDAYKESDRSSNISDLKLQLPQSDASYDLDYTSSDRSDTKAPVGLPLAGPVPLPNIRLDDFNYNNDYTDPAYHDYGYKTPAGFVYDYPHGYSPPAHLHVHSPPPHARSQQGSLTRSIDTASTLPLSNSNGSQNNTLQRTNKPEESDAINNLGLPSGGEAGPQTPIYAQPNPRPQTAVDPRYSATYGNPYLRNSSIGYGNQVHTAKPAATPAPPPYSAVRNSAPTGNGGPAQATHV

Uniprot

A0A2A4J512   A0A2A4J6J8   A0A2A4J5B3   A0A0N1IAU7   A0A212F1H1   A0A2W1BD20   + More
A0A3S2LLT4   A0A194QH08   A0A2A4K6N5   A0A2W1BXG4   A0A194QH44   A0A0N1IFK1   A0A139WL53   A0A2A4K797   D6WHF2   A0A2W1BS56   A0A1Y1MDY1   A0A1Y1MGV5   A0A139WKZ8   A0A212F6J5   A0A212EGX2   A0A1W4WYV5   A0A1W4WYL8   N6UM56   U4UA94   A0A336LIT5   A0A1B6CCC2   A0A1B6DD38   A0A182GTF8   Q17HA9   A0A1I8PJC8   A0A1I8NE46   A0A1I8NE48   A0A182XXZ4   A0A182PL60   A0A224XJU8   A0A1I8M630   A0A1B0A8F0   A0A1A9XTM1   A0A1B0B3Y8   A0A1A9V0M1   A0A1A9V0N2   A0A182R0F3   A0A1I8PVS3   A0A1A9ZLV7   A0A1B0FNC9   A0A182RCJ2   A0A1J1HPX0   A0A1A9XDY6   A0A182VPE7   Q7QEY8   A0A1B0B8K6   A0A182U923   W8BE24   A0A0A9XJP9   A0A182W5B9   A0A1A9WL55   B5DM92   A0A182JDB9   A0A1S4EH93   A0A084VGV9   A0A182NVF9   A0A0R3NZM2   A0A194QIS4   B0WQS2   A0A182SR59   A0A1A9WGC4   A0A0A1XF74   A0A0K8VDK1   B4JJG1   A0A1B6LJR2   A0A1B6MEQ7   Q29HP2   B4L899   A0A0L0C118   A0A1J1HNA1   A0A0R3P510   A0A0M4EUN0   A0A3B0K2L0   B4MCS5   B4JJG7   A0A034WIU0   A0A182GAK6   A0A182M1Q9   B3NTZ2   A0A182IAD8   A0A1W4VSX2   A0A182GHE0   W8AUB9   Q8I063  

Pubmed

26354079    22118469    28756777    18362917    19820115    28004739    + More
23537049    26483478    17510324    25315136    25244985    12364791    14747013    17210077    24495485    25401762    15632085    17994087    24438588    25830018    26108605    25348373    12574866   

EMBL

NWSH01003040    PCG67071.1    PCG67070.1    PCG67069.1    KQ460254    KPJ16354.1    + More
AGBW02010884    OWR47582.1    KZ150124    PZC73139.1    RSAL01000064    RVE49474.1    KQ458859    KPJ04828.1    NWSH01000121    PCG79332.1    KZ149957    PZC76453.1    KPJ04832.1    KPJ16356.1    KQ971321    KYB28680.1    NWSH01000084    PCG79784.1    EFA00099.1    PZC76455.1    GEZM01036660    GEZM01036657    GEZM01036656    JAV82535.1    GEZM01036659    GEZM01036658    GEZM01036655    JAV82537.1    KYB28679.1    AGBW02010002    OWR49362.1    AGBW02014999    OWR40735.1    APGK01018010    APGK01018011    APGK01018012    APGK01018013    APGK01018014    APGK01018015    KB740064    ENN81761.1    KB632165    ERL89278.1    UFQT01000015    SSX17766.1    GEDC01030411    GEDC01029028    GEDC01027080    GEDC01026323    GEDC01026079    GEDC01021839    GEDC01021418    GEDC01008721    GEDC01004895    JAS06887.1    JAS08270.1    JAS10218.1    JAS10975.1    JAS11219.1    JAS15459.1    JAS15880.1    JAS28577.1    JAS32403.1    GEDC01024142    GEDC01013685    GEDC01006693    JAS13156.1    JAS23613.1    JAS30605.1    JXUM01018125    KQ560503    KXJ82106.1    CH477251    EAT46033.1    GFTR01007564    JAW08862.1    JXJN01008112    AXCN02002013    CCAG010019211    CVRI01000013    CRK89578.1    AAAB01008846    EAA06357.5    JXJN01009949    GAMC01011307    GAMC01011306    GAMC01011305    JAB95248.1    GBHO01024576    GBRD01006502    JAG19028.1    JAG59319.1    CH379064    EDY72610.2    ATLV01013099    KE524840    KFB37203.1    KRT06478.1    KPJ04830.1    DS232044    EDS32996.1    GBXI01005154    JAD09138.1    GDHF01015366    JAI36948.1    CH916370    EDV99713.1    GEBQ01016034    JAT23943.1    GEBQ01005564    JAT34413.1    EAL31716.3    CH933814    EDW05674.2    JRES01001043    KNC25985.1    CRK89536.1    KRT06480.1    CP012528    ALC48822.1    OUUW01000015    SPP88525.1    CH940660    EDW57997.1    EDV99719.1    GAKP01004353    JAC54599.1    JXUM01051192    JXUM01051193    JXUM01051194    JXUM01051195    KQ561678    KXJ77827.1    AXCM01000695    CH954180    EDV45700.1    APCN01001193    JXUM01063713    KQ562264    KXJ76278.1    GAMC01016710    GAMC01016708    JAB89847.1    AF419620    AF419621    AAN31396.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000283053    UP000053268    UP000007266    + More
UP000192223    UP000019118    UP000030742    UP000069940    UP000249989    UP000008820    UP000095300    UP000095301    UP000076408    UP000075885    UP000092445    UP000092443    UP000092460    UP000078200    UP000075886    UP000092444    UP000075900    UP000183832    UP000075903    UP000007062    UP000075902    UP000075920    UP000091820    UP000001819    UP000075880    UP000079169    UP000030765    UP000075884    UP000002320    UP000075901    UP000001070    UP000009192    UP000037069    UP000092553    UP000268350    UP000008792    UP000075883    UP000008711    UP000075840    UP000192221   

Pfam

PF07686   V-set        + More
PF08205   C2-set_2
PF13895   Ig_2
PF07679   I-set
PF06682   SARAF

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR013783   Ig-like_fold       
IPR013162   CD80_C2-set       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013098   Ig_I-set       
IPR009567   SARAF       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A2A4J512   A0A2A4J6J8   A0A2A4J5B3   A0A0N1IAU7   A0A212F1H1   A0A2W1BD20   + More
A0A3S2LLT4   A0A194QH08   A0A2A4K6N5   A0A2W1BXG4   A0A194QH44   A0A0N1IFK1   A0A139WL53   A0A2A4K797   D6WHF2   A0A2W1BS56   A0A1Y1MDY1   A0A1Y1MGV5   A0A139WKZ8   A0A212F6J5   A0A212EGX2   A0A1W4WYV5   A0A1W4WYL8   N6UM56   U4UA94   A0A336LIT5   A0A1B6CCC2   A0A1B6DD38   A0A182GTF8   Q17HA9   A0A1I8PJC8   A0A1I8NE46   A0A1I8NE48   A0A182XXZ4   A0A182PL60   A0A224XJU8   A0A1I8M630   A0A1B0A8F0   A0A1A9XTM1   A0A1B0B3Y8   A0A1A9V0M1   A0A1A9V0N2   A0A182R0F3   A0A1I8PVS3   A0A1A9ZLV7   A0A1B0FNC9   A0A182RCJ2   A0A1J1HPX0   A0A1A9XDY6   A0A182VPE7   Q7QEY8   A0A1B0B8K6   A0A182U923   W8BE24   A0A0A9XJP9   A0A182W5B9   A0A1A9WL55   B5DM92   A0A182JDB9   A0A1S4EH93   A0A084VGV9   A0A182NVF9   A0A0R3NZM2   A0A194QIS4   B0WQS2   A0A182SR59   A0A1A9WGC4   A0A0A1XF74   A0A0K8VDK1   B4JJG1   A0A1B6LJR2   A0A1B6MEQ7   Q29HP2   B4L899   A0A0L0C118   A0A1J1HNA1   A0A0R3P510   A0A0M4EUN0   A0A3B0K2L0   B4MCS5   B4JJG7   A0A034WIU0   A0A182GAK6   A0A182M1Q9   B3NTZ2   A0A182IAD8   A0A1W4VSX2   A0A182GHE0   W8AUB9   Q8I063  

PDB

4OF8     E-value=4.67369e-71,     Score=684

KEGG

101739913    no KO assigned | (RefSeq) irregular chiasm C-roughest protein-like

GO

GO:0016021   GO:2001256   GO:0030176   GO:0001745   GO:0007156   GO:0042802   GO:0005913   GO:0030165   GO:0016324   GO:0016202   GO:0005515   GO:0003676   GO:0003677   GO:0005219   GO:0006816   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

763

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.15902

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00047

outside

1  -  484

TMhelix

485  -  507

inside

508  -  763

 

 

Pi

279.32151

Theta

168.660583

Tajima's D

0.97797

CLR

0.513116

CSRT

0.649167541622919

Interpretation

Uncertain