Gene

KWMTBOMO14383

Pre Gene Modal

BGIBMGA013310

Annotation

PREDICTED:_irregular_chiasm_C-roughest_protein-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(+):4429396-4534205      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.231 Nuclear   Reliability : 1.79 PlasmaMembrane   Reliability : 1.103

CDS

ATGTCGAACTACAGACCGAGGACAACTAGTAGGGATGTGAAACCGTTGTTTCTGTTGTTGCGGACCAAGTATGTGCGTTTTTACGTGTTCAGTGCGATATTTATCAGTTCGTTCAGTGTTTGTTGCGGCTTCGCGGAGCAGAAGTTCGCCATGGAGCCACAGGATCAGACCGCCGTTATTGGCTCGAGGGTGACACTGCCATGCAGAGTTGAAAACAAGGTGGGTCAACTCCAGTGGACAAAGGATGATTTCGGCCTTGGACTCCACAGAGAGTTGAGCGGCTATGACCGGTATAAGATGATCGGTAGCGACGAGGAAGGTGACTACTCTTTGGACATCAGAGACGTAAATTTAGATGACGACGCCAAATACCAGTGCCAAGTCAGCTCAGGAGTTAAAGGTGAACCAGCAATTAGGTCACGATACGCCCGTCTCACCGTGCTAGTTCCGCCGGAACCACCGAAAATACTGCAAGGGAATTTCTACTCAACCACCGAAGACAGAAATATCAAATTGGAATGCGTGTCGGTCGGCGGAAAGCCGCCCGCTGAGATAACGTGGGTGGATAGCAACGCCGGAGTTTTGACTCAAGGTGTCACTTACACCGTGGAGCCCCTGTCTGACGGACAAAGGTTTACTGCGAGGTCAATTATAAATATGACGCCCAAGAAGGAACATCACAACCAAACTTTCATTTGTCAAGCTCAGAACACAGCGGACCGGGCGTACAGGGCGGCCAGTATACAAATCGAGGTGAAATACGCTCCTAAAGTGAAGATTTACATAAAATCAAGAGTCAATGGGAGAATTCCCGAAGGGGATGATGTAACAATAGGCTGCAAAGCAGACGCCAATCCAACGAATCTAACTTACAAATGGTATATAAATGAGGAATCTATAAATGGAAACACTACTGAATTGAAAATCTACAACATATCAAGAAAGTACCACGACGCAATAGTGAAATGCGTTGTTTACAACGACGTCGGAAAGACTGAGGAAGAGGAGACCTTGGAGATTACTTATGCGCCATCCTTTCGCCATCTCCCCAAGGACGTCGAAGCCGAAGTTGGCACTAGCGTAACCTTGAGTTGCGATGTGGATAGCTACCCGAATCCAGAGATACGATGGCTCCATCATGAAGAAGACCAGACTATTCGCGTGGGACGCACCCCTAATTTAACTCTCACAGTGGATACCCACACATCAGGGAGGTATCTTTGTAAAGCCAGCGTGGACGGATTCCCTGAAATAGAAGCAGAGGCGTCGGTGTTCATTAAAGGTCCTCCGAAGATAATATCGAATCAGACACAATTCGGTACCCAGGGGGACACAGTGAACATTGAGTGTGCAGCCTTCGCCGTGCCGAGGATAGACAGTATTATCTGGACTTTTAACGGAAGAGAAATAGATTCGTTGCATGATCAGGACTACGCATTCCTCGAAGATCTACAATCAGGAGGCATAGTTAACTCTACGCTAATAATTCGAGAGAGCCAATACAAGCACTTCGGCGTGTACAAATGTAACGTGTCTAATGACTATGGCAATGACTATTTGGAGATTACCGTGACTGCTAAAGAGGCCCTTCCACTGCTGGTGATAATTTTCAGCGTAACCACTTGCACGATTGCCGTGGTTTGCCTAACTATGCTGATAATAATTTGCCAAAGAAAGCAAAAAAGGGGAAAGCAGAGTCAAGTCGCCGAGAAGCCAGATGTGACTGTCACGGCCCAAGAGCTTTTCAAGGATAACGACAGGAACTCAAACATTAGCGACCTGAAGCTTGAACTAAGACAGGCCAACGGTAGCTGTGAAATTGATTATTCCAACACCGGCTCAGATAGTACCTTGTGTTCTAATGCCAAATTAGGCAGCGGCATTCCATTGGCCGGTTCTGTTCCTTTAGCATCTATGAACCAGAATAACTATCAGCCGTACAGATATAGTAACGATTACACAGATCCTGCTTACGCTGATTGTTACAAGGTCAATGGCTTTAACAACGGCTATCAGACGTATGTTCATTATGGACATGATTACACGCCTGGTTCGTTGAGGGTGCAGTCGCCGACTTTGGCCAGCGATAAACTCACCCCTAACAGGTCTATAAACGGAAGTTTACCTAGAAGTGTCGATACGCCATCGACGGTTCAATACAACGTAGGGAACGGATCCCAAAATAACTCGTTGCAGCGTTCAACAAAACGGCAAGACAGCAGCAGCGCATTGAATAACCTGGGCCTTCCTACAGCAGAGGTAAGCCGCGTGCCTAATGGTGGCATACATGGTGTTGATATAAGATACGCAGCAACATATGGGAATCCACATTTACGTTCTGGAGGTGGACTGGGTTTCAATACTGTTAACACTGCCAAACCGGCGTCCACTCCAGCGCCACCACCTTATTCGTCTGTCAGAAATTCTGTAATATTACCTTCAGGTAACTCCTCTCACTCTATAACATCGCCAACAAGTGTAGCCTCACCACAATGCGCTACTAGTCCTATAACAACGTCAACTATATCCACTGACAGCACCCAGCCGCTGACCGGCGTGGCAACTTCGTCCGCGACCCCACAGTCTCCTAGCGCACATTACATACTCGCACCATCGAACAGGAGTATAACAACGGCCGCTGTTACTAAGAAAGGTAATGGCTTGCAATCACCCTTGGCAACGCACGTATAA

Protein

MSNYRPRTTSRDVKPLFLLLRTKYVRFYVFSAIFISSFSVCCGFAEQKFAMEPQDQTAVIGSRVTLPCRVENKVGQLQWTKDDFGLGLHRELSGYDRYKMIGSDEEGDYSLDIRDVNLDDDAKYQCQVSSGVKGEPAIRSRYARLTVLVPPEPPKILQGNFYSTTEDRNIKLECVSVGGKPPAEITWVDSNAGVLTQGVTYTVEPLSDGQRFTARSIINMTPKKEHHNQTFICQAQNTADRAYRAASIQIEVKYAPKVKIYIKSRVNGRIPEGDDVTIGCKADANPTNLTYKWYINEESINGNTTELKIYNISRKYHDAIVKCVVYNDVGKTEEEETLEITYAPSFRHLPKDVEAEVGTSVTLSCDVDSYPNPEIRWLHHEEDQTIRVGRTPNLTLTVDTHTSGRYLCKASVDGFPEIEAEASVFIKGPPKIISNQTQFGTQGDTVNIECAAFAVPRIDSIIWTFNGREIDSLHDQDYAFLEDLQSGGIVNSTLIIRESQYKHFGVYKCNVSNDYGNDYLEITVTAKEALPLLVIIFSVTTCTIAVVCLTMLIIICQRKQKRGKQSQVAEKPDVTVTAQELFKDNDRNSNISDLKLELRQANGSCEIDYSNTGSDSTLCSNAKLGSGIPLAGSVPLASMNQNNYQPYRYSNDYTDPAYADCYKVNGFNNGYQTYVHYGHDYTPGSLRVQSPTLASDKLTPNRSINGSLPRSVDTPSTVQYNVGNGSQNNSLQRSTKRQDSSSALNNLGLPTAEVSRVPNGGIHGVDIRYAATYGNPHLRSGGGLGFNTVNTAKPASTPAPPPYSSVRNSVILPSGNSSHSITSPTSVASPQCATSPITTSTISTDSTQPLTGVATSSATPQSPSAHYILAPSNRSITTAAVTKKGNGLQSPLATHV

Uniprot

A0A2W1BXG4   A0A2A4K6N5   A0A212F6J5   A0A194QIS4   A0A2H1VR82   A0A2A4J512   + More
A0A2A4J6J8   A0A2A4J5B3   A0A194QH44   A0A0N1IAU7   A0A2W1BS56   A0A212F1H1   A0A2A4K797   D6WHF2   A0A139WKZ8   A0A139WL53   A0A212EGX2   A0A1Y1MDY1   A0A1Y1MGV5   A0A1W4WYV5   A0A1W4WYL8   A0A1B6CCC2   A0A1B6DD38   A0A3S2LLT4   N6UM56   U4UA94   A0A2W1BD20   A0A224XJU8   A0A0A9XJP9   A0A1S4EH93   A0A182GTF8   A0A336LIT5   A0A182XXZ4   Q17HA9   A0A182W5B9   A0A182PL60   A0A1I8PJC8   A0A084VGV9   A0A182RCJ2   A0A182JDB9   A0A1I8NE46   A0A182FIZ2   Q7QEY8   A0A1I8NE48   A0A182VPE7   A0A182U923   B4NDY0   B0WQS2   A0A182J1W2   A0A1B6MEQ7   A0A182PBZ6   A0A0A1XF74   A0A182GAK6   A0A1J1HPX0   A0A1B6LJR2   A0A182RNF1   A0A182QTQ6   A0A182R0F3   A0A182W5C0   W8BE24   A0A3B0K780   A0A182NVF9   A0A1A9V0N2   Q29HP2   A0A0R3P510   A0A1A9ZLV7   A0A182GHE0   A0A1B0FNC9   A0A1A9XDY6   A0A1B0B8K6   A0A0K8VDK1   A0A182IAD7   A0A1A9WGC4   A0A182UYI5   A0A182SR59   A0A182XXZ3   Q9N9Y9   Q9W4T9   A0A1B0CQR5   A0A182IAD8   A0A182M1Q9   A0A182NVG0   A0A182WTP5   A0A182KDT0  

Pubmed

28756777    22118469    26354079    18362917    19820115    28004739    + More
23537049    25401762    26483478    25244985    17510324    24438588    25315136    12364791    14747013    17210077    17994087    25830018    24495485    15632085    10943839    11684659    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24485456    26109357    26109356   

EMBL

KZ149957    PZC76453.1    NWSH01000121    PCG79332.1    AGBW02010002    OWR49362.1    + More
KQ458859    KPJ04830.1    ODYU01003674    SOQ42744.1    NWSH01003040    PCG67071.1    PCG67070.1    PCG67069.1    KPJ04832.1    KQ460254    KPJ16354.1    PZC76455.1    AGBW02010884    OWR47582.1    NWSH01000084    PCG79784.1    KQ971321    EFA00099.1    KYB28679.1    KYB28680.1    AGBW02014999    OWR40735.1    GEZM01036660    GEZM01036657    GEZM01036656    JAV82535.1    GEZM01036659    GEZM01036658    GEZM01036655    JAV82537.1    GEDC01030411    GEDC01029028    GEDC01027080    GEDC01026323    GEDC01026079    GEDC01021839    GEDC01021418    GEDC01008721    GEDC01004895    JAS06887.1    JAS08270.1    JAS10218.1    JAS10975.1    JAS11219.1    JAS15459.1    JAS15880.1    JAS28577.1    JAS32403.1    GEDC01024142    GEDC01013685    GEDC01006693    JAS13156.1    JAS23613.1    JAS30605.1    RSAL01000064    RVE49474.1    APGK01018010    APGK01018011    APGK01018012    APGK01018013    APGK01018014    APGK01018015    KB740064    ENN81761.1    KB632165    ERL89278.1    KZ150124    PZC73139.1    GFTR01007564    JAW08862.1    GBHO01024576    GBRD01006502    JAG19028.1    JAG59319.1    JXUM01018125    KQ560503    KXJ82106.1    UFQT01000015    SSX17766.1    CH477251    EAT46033.1    ATLV01013099    KE524840    KFB37203.1    AAAB01008846    EAA06357.5    CH964239    EDW81949.1    DS232044    EDS32996.1    GEBQ01005564    JAT34413.1    GBXI01005154    JAD09138.1    JXUM01051192    JXUM01051193    JXUM01051194    JXUM01051195    KQ561678    KXJ77827.1    CVRI01000013    CRK89578.1    GEBQ01016034    JAT23943.1    AXCN02002018    AXCN02002013    GAMC01011307    GAMC01011306    GAMC01011305    JAB95248.1    OUUW01000015    SPP88532.1    CH379064    EAL31716.3    KRT06480.1    JXUM01063713    KQ562264    KXJ76278.1    CCAG010019211    JXJN01009949    GDHF01015366    JAI36948.1    APCN01001155    AF196553    AJ289882    AAF86308.1    CAB96574.2    AE014298    AAF45847.2    AAN09598.1    AFH07219.1    AFH07220.1    AFH07221.1    AFH07222.1    AGB95042.1    AJWK01023927    APCN01001193    AXCM01000695   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240    UP000007266    UP000192223    + More
UP000283053    UP000019118    UP000030742    UP000079169    UP000069940    UP000249989    UP000076408    UP000008820    UP000075920    UP000075885    UP000095300    UP000030765    UP000075900    UP000075880    UP000095301    UP000069272    UP000007062    UP000075903    UP000075902    UP000007798    UP000002320    UP000183832    UP000075886    UP000268350    UP000075884    UP000078200    UP000001819    UP000092445    UP000092444    UP000092443    UP000092460    UP000075840    UP000091820    UP000075901    UP000000803    UP000092461    UP000075883    UP000076407    UP000075881   

PRIDE

Q9N9Y9    Q9W4T9   

Pfam

PF08205   C2-set_2        + More
PF07679   I-set
PF07686   V-set
PF13895   Ig_2

Interpro

IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR013098   Ig_I-set       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013162   CD80_C2-set       
IPR013783   Ig-like_fold       
IPR013106   Ig_V-set       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A2W1BXG4   A0A2A4K6N5   A0A212F6J5   A0A194QIS4   A0A2H1VR82   A0A2A4J512   + More
A0A2A4J6J8   A0A2A4J5B3   A0A194QH44   A0A0N1IAU7   A0A2W1BS56   A0A212F1H1   A0A2A4K797   D6WHF2   A0A139WKZ8   A0A139WL53   A0A212EGX2   A0A1Y1MDY1   A0A1Y1MGV5   A0A1W4WYV5   A0A1W4WYL8   A0A1B6CCC2   A0A1B6DD38   A0A3S2LLT4   N6UM56   U4UA94   A0A2W1BD20   A0A224XJU8   A0A0A9XJP9   A0A1S4EH93   A0A182GTF8   A0A336LIT5   A0A182XXZ4   Q17HA9   A0A182W5B9   A0A182PL60   A0A1I8PJC8   A0A084VGV9   A0A182RCJ2   A0A182JDB9   A0A1I8NE46   A0A182FIZ2   Q7QEY8   A0A1I8NE48   A0A182VPE7   A0A182U923   B4NDY0   B0WQS2   A0A182J1W2   A0A1B6MEQ7   A0A182PBZ6   A0A0A1XF74   A0A182GAK6   A0A1J1HPX0   A0A1B6LJR2   A0A182RNF1   A0A182QTQ6   A0A182R0F3   A0A182W5C0   W8BE24   A0A3B0K780   A0A182NVF9   A0A1A9V0N2   Q29HP2   A0A0R3P510   A0A1A9ZLV7   A0A182GHE0   A0A1B0FNC9   A0A1A9XDY6   A0A1B0B8K6   A0A0K8VDK1   A0A182IAD7   A0A1A9WGC4   A0A182UYI5   A0A182SR59   A0A182XXZ3   Q9N9Y9   Q9W4T9   A0A1B0CQR5   A0A182IAD8   A0A182M1Q9   A0A182NVG0   A0A182WTP5   A0A182KDT0  

PDB

4OF8     E-value=1.0144e-84,     Score=802

KEGG

101739776    no KO assigned | (RefSeq) irregular chiasm C-roughest protein-like

GO

GO:0016021   GO:0061321   GO:0036059   GO:0007523   GO:0016202   GO:0001745   GO:0005886   GO:0007156   GO:0036058   GO:0007520   GO:0007157   GO:0009986   GO:0050839   GO:0005917   GO:1901739   GO:0005912   GO:0097206   GO:0005515   GO:0005262   GO:0005219   GO:0006816   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

896

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

42.5674800000002

Exp number, first 60 AAs:

19.56903

Total prob of N-in:

0.87598

POSSIBLE N-term signal

sequence

inside

1  -  23

TMhelix

24  -  46

outside

47  -  532

TMhelix

533  -  555

inside

556  -  896

 

 

Pi

240.588641

Theta

172.340197

Tajima's D

1.197832

CLR

0.139761

CSRT

0.71986400679966

Interpretation

Uncertain