Silkworm Genome Informatics Database

Gene

KWMTBOMO14382

Annotation

Irregular_chiasm_C-roughest_protein_[Papilio_xuthus]

Location

Bomo_Chr24(+):4172546-4182820 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.643

CDS

ATGCTGATATCGTTAATAGGAGGTTCGTCGGCTATAATATTTATCCTCATTATAATGTTTGTAATAATGTTATTCCATAATAAAACTAAAAAGGCTGATGTAAAAAAACCACATATAACCGATATAGAGAAGAACTGTGGAAGCTATAAAGAGAGCGATCGGCATTCGAACATAAGTGATCTCAAATTGGAATTGAGACAAATCGAAGGGAACTGTGATATGGACCACTCAAACACCGAAGCAGATCTACATCCTACATTACATATAACAACGAACCTTGGATTGCCACTAGCTGGGCCGGTTCCCCTACCGGAGACCGGCTTTGACGACGAGCTTATGAAGTACCAGAGATACAGCGGAGACTTCAATCAGCAAGTGAACAGTTTGCATTTTAAGTCGCACCCTCAAAGCAACGGCTACGTTCCCTACGTGGATTACTCAAGGGACTACGCCCCGCCAGTGCCATCGGAATCGCTGTCCAGTTCGCTGACCAGAAGCACTGACGGGTCTTCGTACCCTGGTCATTATGGGTCCTTAAGGCGGCAAGCTAGCTGTGGAAGACTGGGTGGTCTCGTCGGACCTGATGTGATACCGTTCACGAATCCCGGAGTCGTCCTGTCAGGCCTTGACGTGAGGTACTCTGCTGCATATGGAAATCCTTATCTAAGAAGTGGCGGATCTTCGCCATACGGCTCTCAAAGTGCTTCGCTATCGACTGGAAAACCAACTCCACCACCGTACTATACAATACGTCAGGGGTGTCATCCGTCAGTTCCGCCGGTAACGACTCCTTCATCATCGTCGTCCCGACCGGTCACCAGCCCTCCAGCTTCGTCGTCATCGACAAACAGTGGAGCTCAGCCTCAGATGCCAAAGCCGTGCTCACAAAATTCAGCCCAATATATCCTACAGCCGTCCAATCAGGGAAAGATACAAACCAAACATGGAACCAAAGGTGGGTATAGCTATCGTTTTATTGATTTTATAGGCTGA

Protein

MLISLIGGSSAIIFILIIMFVIMLFHNKTKKADVKKPHITDIEKNCGSYKESDRHSNISDLKLELRQIEGNCDMDHSNTEADLHPTLHITTNLGLPLAGPVPLPETGFDDELMKYQRYSGDFNQQVNSLHFKSHPQSNGYVPYVDYSRDYAPPVPSESLSSSLTRSTDGSSYPGHYGSLRRQASCGRLGGLVGPDVIPFTNPGVVLSGLDVRYSAAYGNPYLRSGGSSPYGSQSASLSTGKPTPPPYYTIRQGCHPSVPPVTTPSSSSSRPVTSPPASSSSTNSGAQPQMPKPCSQNSAQYILQPSNQGKIQTKHGTKGGYSYRFIDFIG

Uniprot

A0A2A4K797 A0A2W1BS56 A0A194QH44 A0A194RJT7 A0A2H1VR82 A0A0N1IFK1 + More
A0A2W1BXG4 A0A194QIS4 A0A2A4K6N5 A0A212F6J5 A0A2W1BD20 A0A2A4J512 A0A2A4J6J8 A0A2A4J5B3 A0A2H1WKM6 A0A182R0F3 A0A182W5B9 A0A182M1Q9 A0A182NVF9 A0A3S2LLT4 A0A182PL60 A0A182RCJ2

Pubmed

28756777 26354079 22118469

EMBL

NWSH01000084 PCG79784.1 KZ149957 PZC76455.1 KQ458859 KPJ04832.1 + More
KQ460124 KPJ17600.1 ODYU01003674 SOQ42744.1 KQ460254 KPJ16356.1 PZC76453.1 KPJ04830.1 NWSH01000121 PCG79332.1 AGBW02010002 OWR49362.1 KZ150124 PZC73139.1 NWSH01003040 PCG67071.1 PCG67070.1 PCG67069.1 ODYU01009278 SOQ53588.1 AXCN02002013 AXCM01000695 RSAL01000064 RVE49474.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151 UP000075886 UP000075920 + More
UP000075883 UP000075884 UP000283053 UP000075885 UP000075900

Pfam

PF07679   I-set        + More
PF08205   C2-set_2
PF13895   Ig_2
PF07686   V-set

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2
IPR013098   Ig_I-set
IPR013783   Ig-like_fold
IPR013162   CD80_C2-set
IPR003599   Ig_sub
IPR007110   Ig-like_dom
IPR013106   Ig_V-set

SUPFAM

SSF48726 SSF48726

Gene 3D

2.60.40.10

ProteinModelPortal

A0A2A4K797 A0A2W1BS56 A0A194QH44 A0A194RJT7 A0A2H1VR82 A0A0N1IFK1 + More
A0A2W1BXG4 A0A194QIS4 A0A2A4K6N5 A0A212F6J5 A0A2W1BD20 A0A2A4J512 A0A2A4J6J8 A0A2A4J5B3 A0A2H1WKM6 A0A182R0F3 A0A182W5B9 A0A182M1Q9 A0A182NVF9 A0A3S2LLT4 A0A182PL60 A0A182RCJ2

KEGG

NA

GO

GO:0016021

Length:

330

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.42041

Exp number, first 60 AAs:

22.29513

Total prob of N-in:

0.54116

POSSIBLE N-term signal

sequence

inside

1 - 1

TMhelix

2 - 24

outside

25 - 330

Pi

185.910239

Theta

154.248744

Tajima's D

0.582237

CLR

0.098845

CSRT

0.534673266336683

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics