Gene

KWMTBOMO14381

Pre Gene Modal

BGIBMGA013308

Annotation

PREDICTED:_irregular_chiasm_C-roughest_protein-like_[Bombyx_mori]

Location

Bomo_Chr24(+):4115576-4155265      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.112 Nuclear   Reliability : 1.729

CDS

ATGTTGTTTATCTTTTTTGTTAGTGTCAGTGCCAGTGTCAGTGCGTTTGGGGAGCAACGGTTCGCGCTAGAACCTCAAGATCAGACCGCCATATTAGGTTCCAGAGTGATCCTTCCGTGCAGAGTTGAGGAGAAGGCTGGGCAACTTCAGTGGACTAAGGATGACTTTGGACTCGGTACACACCGCCATCTGGCCGGATACGAGCGCTACAAAATGATTGGCAGCGACGAAGAAGGCGACTACTCGTTGGACATCAGAGAAGTTACGCTGGATGACGACGCAGCATATCAATGCCAAGTTAGCTCTGGACCGAGGGGTGAGCCAGCAATTCGGTCAAGGTACGCCCGACTGACGGTGCTGGTACCACCAGATCCTCCAAAGATACTTCGGGGGCCCGTCATTCCAGCTATAGAAGACAGAGAGCTGGATTTGGAGTGTGTTTCAGTAGGAGGAAAACCTCCAGCGGAGATAACGTGGGTCGACAATGACGGTGGAGTTTTGACTCAAGGTGTCACTTATACCGTGGAACCGATGGGTGATGGCAGAAGATTTACGGCGAGGTCTACCCTCAGAATACGTCCCAGACGCCAACACCACAATCAGACTTTTACTTGCCAAGCGCAGAACACTGCAGACAGGGCGTATAGATCTGTCAACGTCAAATTACAAGTCCAATACGCGCCTAAGGTCCGTCTCTTCATGAAATCCGGGTCAATAAAAGGGAGAATACAAGAAGGGGAAACATTAATAATAGGGTGCCAATCGAATGCCAACCCTAGTAATGTATCTTACAAATGGTACATAAACAATGATGAAGCAATTGGAGAAGTGAAAAATGAATTGGTAAGTATTCAATGA

Protein

MLFIFFVSVSASVSAFGEQRFALEPQDQTAILGSRVILPCRVEEKAGQLQWTKDDFGLGTHRHLAGYERYKMIGSDEEGDYSLDIREVTLDDDAAYQCQVSSGPRGEPAIRSRYARLTVLVPPDPPKILRGPVIPAIEDRELDLECVSVGGKPPAEITWVDNDGGVLTQGVTYTVEPMGDGRRFTARSTLRIRPRRQHHNQTFTCQAQNTADRAYRSVNVKLQVQYAPKVRLFMKSGSIKGRIQEGETLIIGCQSNANPSNVSYKWYINNDEAIGEVKNELVSIQ

Uniprot

A0A2A4K797   A0A2W1BS56   A0A194QH44   A0A2W1BXG4   A0A2A4K6N5   A0A212EGX2   + More
A0A0N1IFK1   A0A182TDV2   A0A0T6BEN3   A0A139WL53   A0A139WKZ8   D6WHF2   A0A0L0C118   A0A182KLH1   Q8MSN7   A0A182WTP6   C4IXX7   A0A1Y1MDY1   A0A1Y1MGV5   A0A084VGX9   N6UM56   U4UA94   A0A182KDT0   Q17HA9   B0WI75   A0A182SHI5   A0A182XXZ4   A0A1I8M630   Q29HP2   A0A0R3P510   A0A1I8PVS3   B3N1W4   A0A182XXZ3   B4GYL5   A0A3B0K780   A0A182LX93   Q17HB1   A0A1A9XTM1   A0A182NVF9   A0A182RNF1   A0A1B0FNC9   A0A1A9V0N2   A0A182IAD7   B4IA24   A0A182UYI5   A0A1W4WYL8   A0A1A9ZLV7   A0A1B0B3Y8   A0A1W4WYV5   A0A1B6GC68   A0A182RCJ2   Q7QEY7   A0A182W5C0   A0A182NVG0   A0A182U923   A0A1A9XDY6   A0A1B0B8K6   A0A182GTF8   A0A1B0CQR5   Q7QEY8   A0A1A9WGC4   A0A0A1XF74   A0A182PBZ6   B4NDY0   A0A182QTQ6   A0A182VPE7   A0A084VGV9   B3NTZ7   A0A1A9V0M1   B4Q0T5   A0A182W5B9   W8BE24   A0A0K8VDK1   Q9W4T9   O97174   Q9N9Y9   A0A182JDB9   A0A1B0A8F0   A0A1I8NE46   A0A3B0K2L0   A0A1I8NE48   A0A182R0F3   A0A336LIT5   A0A1I8PJC8   A0A182J1W2   A0A1W4VSX2   A0A182GAK6   A0A034WIU0   A0A182GHE0   A0A182PL60   B5DM92   A0A0K8WLP0   A0A0K8UAG8   A0A0R3NZM2   A0A182SR59   A0A1A9WL55   W8AUB9   A0A0M4EUN0   B4L899   B4NDX8  

Pubmed

28756777    26354079    22118469    18362917    19820115    26108605    + More
20966253    28004739    24438588    23537049    17510324    25244985    25315136    15632085    17994087    12364791    26483478    14747013    17210077    25830018    17550304    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24485456    26109357    26109356    10943839    11684659    25348373   

EMBL

NWSH01000084    PCG79784.1    KZ149957    PZC76455.1    KQ458859    KPJ04832.1    + More
PZC76453.1    NWSH01000121    PCG79332.1    AGBW02014999    OWR40735.1    KQ460254    KPJ16356.1    LJIG01001327    KRT85613.1    KQ971321    KYB28680.1    KYB28679.1    EFA00099.1    JRES01001043    KNC25985.1    AY118686    AAM50546.1    BT083408    ACQ83322.1    GEZM01036660    GEZM01036657    GEZM01036656    JAV82535.1    GEZM01036659    GEZM01036658    GEZM01036655    JAV82537.1    ATLV01013115    KE524840    KFB37223.1    APGK01018010    APGK01018011    APGK01018012    APGK01018013    APGK01018014    APGK01018015    KB740064    ENN81761.1    KB632165    ERL89278.1    CH477251    EAT46033.1    DS231944    EDS28290.1    CH379064    EAL31716.3    KRT06480.1    CH902663    EDV30005.1    CH479197    EDW27871.1    OUUW01000015    SPP88532.1    AXCM01000249    EAT46031.1    CCAG010019211    APCN01001155    CH480825    EDW44055.1    JXJN01008112    GECZ01009876    JAS59893.1    AAAB01008846    EAA06355.4    JXJN01009949    JXUM01018125    KQ560503    KXJ82106.1    AJWK01023927    EAA06357.5    GBXI01005154    JAD09138.1    CH964239    EDW81949.1    AXCN02002018    ATLV01013099    KFB37203.1    CH954180    EDV45705.1    CM000162    EDX01302.2    GAMC01011307    GAMC01011306    GAMC01011305    JAB95248.1    GDHF01015366    JAI36948.1    AE014298    AAF45847.2    AAN09598.1    AFH07219.1    AFH07220.1    AFH07221.1    AFH07222.1    AGB95042.1    AL035436    CAB36503.1    AF196553    AJ289882    AAF86308.1    CAB96574.2    SPP88525.1    AXCN02002013    UFQT01000015    SSX17766.1    JXUM01051192    JXUM01051193    JXUM01051194    JXUM01051195    KQ561678    KXJ77827.1    GAKP01004353    JAC54599.1    JXUM01063713    KQ562264    KXJ76278.1    EDY72610.2    GDHF01000554    JAI51760.1    GDHF01032907    GDHF01028726    GDHF01010672    JAI19407.1    JAI23588.1    JAI41642.1    KRT06478.1    GAMC01016710    GAMC01016708    JAB89847.1    CP012528    ALC48822.1    CH933814    EDW05674.2    EDW81947.2   

Proteomes

UP000218220    UP000053268    UP000007151    UP000053240    UP000075902    UP000007266    + More
UP000037069    UP000075882    UP000076407    UP000030765    UP000019118    UP000030742    UP000075881    UP000008820    UP000002320    UP000075901    UP000076408    UP000095301    UP000001819    UP000095300    UP000007801    UP000008744    UP000268350    UP000075883    UP000092443    UP000075884    UP000075900    UP000092444    UP000078200    UP000075840    UP000001292    UP000075903    UP000192223    UP000092445    UP000092460    UP000007062    UP000075920    UP000069940    UP000249989    UP000092461    UP000091820    UP000075885    UP000007798    UP000075886    UP000008711    UP000002282    UP000000803    UP000075880    UP000192221    UP000092553    UP000009192   

PRIDE

Q8MSN7    C4IXX7    Q9W4T9    O97174    Q9N9Y9   

Pfam

PF07679   I-set        + More
PF08205   C2-set_2
PF13895   Ig_2
PF07686   V-set
PF06682   SARAF

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2       
IPR013098   Ig_I-set       
IPR013783   Ig-like_fold       
IPR013162   CD80_C2-set       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013106   Ig_V-set       
IPR009567   SARAF       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A2A4K797   A0A2W1BS56   A0A194QH44   A0A2W1BXG4   A0A2A4K6N5   A0A212EGX2   + More
A0A0N1IFK1   A0A182TDV2   A0A0T6BEN3   A0A139WL53   A0A139WKZ8   D6WHF2   A0A0L0C118   A0A182KLH1   Q8MSN7   A0A182WTP6   C4IXX7   A0A1Y1MDY1   A0A1Y1MGV5   A0A084VGX9   N6UM56   U4UA94   A0A182KDT0   Q17HA9   B0WI75   A0A182SHI5   A0A182XXZ4   A0A1I8M630   Q29HP2   A0A0R3P510   A0A1I8PVS3   B3N1W4   A0A182XXZ3   B4GYL5   A0A3B0K780   A0A182LX93   Q17HB1   A0A1A9XTM1   A0A182NVF9   A0A182RNF1   A0A1B0FNC9   A0A1A9V0N2   A0A182IAD7   B4IA24   A0A182UYI5   A0A1W4WYL8   A0A1A9ZLV7   A0A1B0B3Y8   A0A1W4WYV5   A0A1B6GC68   A0A182RCJ2   Q7QEY7   A0A182W5C0   A0A182NVG0   A0A182U923   A0A1A9XDY6   A0A1B0B8K6   A0A182GTF8   A0A1B0CQR5   Q7QEY8   A0A1A9WGC4   A0A0A1XF74   A0A182PBZ6   B4NDY0   A0A182QTQ6   A0A182VPE7   A0A084VGV9   B3NTZ7   A0A1A9V0M1   B4Q0T5   A0A182W5B9   W8BE24   A0A0K8VDK1   Q9W4T9   O97174   Q9N9Y9   A0A182JDB9   A0A1B0A8F0   A0A1I8NE46   A0A3B0K2L0   A0A1I8NE48   A0A182R0F3   A0A336LIT5   A0A1I8PJC8   A0A182J1W2   A0A1W4VSX2   A0A182GAK6   A0A034WIU0   A0A182GHE0   A0A182PL60   B5DM92   A0A0K8WLP0   A0A0K8UAG8   A0A0R3NZM2   A0A182SR59   A0A1A9WL55   W8AUB9   A0A0M4EUN0   B4L899   B4NDX8  

PDB

4OF8     E-value=6.18773e-83,     Score=781

KEGG

101739354    no KO assigned | (RefSeq) irregular chiasm C-roughest protein-like

GO

GO:0016021   GO:0005917   GO:1901739   GO:0097206   GO:0007157   GO:0036059   GO:0050839   GO:0005912   GO:0001745   GO:0005886   GO:0007156   GO:0036058   GO:0007520   GO:0009986   GO:0007523   GO:0016202   GO:0061321   GO:0030176   GO:2001256   GO:0042802   GO:0005913   GO:0030165   GO:0016324   GO:0005515   GO:0005262   GO:0005219   GO:0006816   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

SignalP

Position:   1 - 15,         Likelihood:  0.898563

 

 

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02539

Exp number, first 60 AAs:

0.02539

Total prob of N-in:

0.00386

outside

1  -  285

 

 

Pi

258.478592

Theta

176.870521

Tajima's D

1.490358

CLR

0.169872

CSRT

0.784210789460527

Interpretation

Uncertain