Silkworm Genome Informatics Database

Gene

KWMTBOMO14374

Pre Gene Modal

BGIBMGA011938

Annotation

Zinc_finger_matrin-type_protein_5_[Papilio_machaon]

Location

Bomo_Chr24(+):3882977-3885170 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.153

CDS

ATGAGTGGAAATTGTTCGTTCGGACCAATATGCAGGTACTCGCATTACACGAAGGAGGAATTAGATAATTTGAACCTACAAGTTCAGCAACAAAAACGAAAGAAAACAAAACAGCCAGAACCGTCCTTGGAAAATTTGTATGAACAATTGCAAAATGAAAAGTCAAACGATCTCACTGTGCAGAGCGAAACTCTCATAGTTGATGCGAACGGGCGGACACATTTCCTGCCTTGGGTGTACAATCCTAAGTTTGATATGTTCAAATTACCACCGAGCCTAGAAAGGTTCACACCGGAAAATATGTATTGTCCTCCTACTCATTGGGGATGA

Protein

MSGNCSFGPICRYSHYTKEELDNLNLQVQQQKRKKTKQPEPSLENLYEQLQNEKSNDLTVQSETLIVDANGRTHFLPWVYNPKFDMFKLPPSLERFTPENMYCPPTHWG

Uniprot

H9JQY2 A0A3S2NV15 A0A194RNL4 S4NYN6 A0A194QH49 A0A212FEL1 + More
A0A2W1BR97 A0A2A4K5V2 A0A2H1VFA2 A0A0R3SAC9

Pubmed

19121390 26354079 23622113 22118469 28756777

EMBL

BABH01028566 RSAL01000064 RVE49461.1 KQ460124 KPJ17606.1 GAIX01008459 + More
JAA84101.1 KQ458859 KPJ04837.1 AGBW02008928 OWR52174.1 KZ149968 PZC76145.1 NWSH01000097 PCG79611.1 ODYU01002263 SOQ39518.1 UYSG01000232 VDL18762.1

Proteomes

UP000005204 UP000283053 UP000053240 UP000053268 UP000007151 UP000218220 + More
UP000046397 UP000274504

PRIDE

H9JQY2

Pfam

PF06220 zf-U1 + More
PF00642 zf-CCCH

Interpro

IPR000571   Znf_CCCH        + More
IPR013085   U1-CZ_Znf_C2H2
IPR036236   Znf_C2H2_sf
IPR003604   Matrin/U1-like-C_Znf_C2H2
IPR036855   Znf_CCCH_sf

SUPFAM

SSF57667 SSF57667 + More
SSF90229 SSF90229

ProteinModelPortal

H9JQY2 A0A3S2NV15 A0A194RNL4 S4NYN6 A0A194QH49 A0A212FEL1 + More
A0A2W1BR97 A0A2A4K5V2 A0A2H1VFA2 A0A0R3SAC9

KEGG

101743163 K13152 U11/U12 small nuclear ribonucleoprotein 20 kDa protein | (RefSeq) zinc finger matrin-type pro

GO

GO:0008270 GO:0046872 GO:0003676 GO:0005515 GO:0005262 GO:0005219 GO:0006816 GO:0016021 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

109

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06730

outside

1 - 109

Pi

187.513017

Theta

153.3117

Tajima's D

1.095817

CLR

0

CSRT

0.686965651717414

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics