Gene

KWMTBOMO14367

Pre Gene Modal

BGIBMGA013298

Annotation

PREDICTED:_ryanodine_receptor_44F_isoform_X11_[Bombyx_mori]

Location

Bomo_Chr24(-):3674640-3686756      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.73

CDS

ATGTGGTCCAGCATTGGTGCCGTCGTTTATGTGATGAAAAGTCCTCACTATTGTTTGGTACCGCTTGCGATCTTCAAACGCGAGAAGGAAATAGCTCGTAAACTGGAGTTTGACGGCCTGTACATCGCCGAGCAACCCGAAGATGATGACTTCAAAAGTCATTGGGATAAACTCGTCATATCCGCTAAGTCCTTCCCTGTGAACTATTGGGACAAATTCGTGAAGAAGAAAGTACGAGCTAAGTACTCTGAGACCTACGACTTCGATTCAATATCGAATATGCTCGGGATGGAGAAGACTTCGTTCTCAGCTCAAGAAGACGAAGGCAGCAAGGGGTTGCTCCACTACATTATAAACATCGACTGGCGTTACCAAGTGTGGAAGGCCGGCGTCACGATAACGGACAACTCCTTCTTGTACTCGCTGTGGTATTTCGCTTTCTCGGTCATGGGAAATTTCAATAATTTCTTCTTCGCGGCCCATCTACTGGACGTCGCCGTCGGCTTCAAGACTCTAAGGACGATTCTTCAATCAGTAACACATAATGGGAAACAGCTCGTCTTAACAGTGATGTTGCTTACGATCATCGTGTACATATACACTGTGATCGCTTTCAATTTCTTCCGCAAGTTCTACGTCCAGGAGGAAGATGACGAGGTCAACCGGAACTGTCATGACATGCTGACGTGCTTCGTGTTCAACCTGTACAAGGGAGTGCGCGCCGGCGGTGGTATCGGGGACGAGCTGGAGCCGCCCGACGGAGACGACTCCGAGGTCTACAGGATCATATTCGACATATCCTTCTTCTTCTTCATCATCGTCATTCTGCTGGCCATTTTGCAGGGTTTGATCATCGATGCCTTCGGTGAGCTCCGTGACCAGCTCGAGTCCGTGAAGGAGGACATGGAGTCCAACTGCTTTATATGCGGCATCAATAAAGACTACTTTGATAAGGTTCCACATGGGTTCGATACGCACGTGCAGCGAGAACATAATTTAGCGAATTACATGTTCTTCCTTATGCATCTCATCAATAAACCAGACACGGAATACACCGGTCAAGAAACATACGTATGGAACATGTACACGCAGCGTTGCTGGGACTTCTTCCCGGTCGGTGACTGCTTCAGGAAGCAATACGAAGATCTTATGGGAGAATAA

Protein

MWSSIGAVVYVMKSPHYCLVPLAIFKREKEIARKLEFDGLYIAEQPEDDDFKSHWDKLVISAKSFPVNYWDKFVKKKVRAKYSETYDFDSISNMLGMEKTSFSAQEDEGSKGLLHYIINIDWRYQVWKAGVTITDNSFLYSLWYFAFSVMGNFNNFFFAAHLLDVAVGFKTLRTILQSVTHNGKQLVLTVMLLTIIVYIYTVIAFNFFRKFYVQEEDDEVNRNCHDMLTCFVFNLYKGVRAGGGIGDELEPPDGDDSEVYRIIFDISFFFFIIVILLAILQGLIIDAFGELRDQLESVKEDMESNCFICGINKDYFDKVPHGFDTHVQREHNLANYMFFLMHLINKPDTEYTGQETYVWNMYTQRCWDFFPVGDCFRKQYEDLMGE

Uniprot

H9JUT5   A0A2A4K134   A0A2A4K254   A0A2A4K169   A0A0P0QLS4   A0A0P0QLT4   + More
A0A0P0QM29   H9CNL0   A0A0P0QM31   A0A0P0QM39   A0A0P0QM12   A0A0P0QLR0   A0A059XMJ0   V5RE97   A0A0P0QM17   A0A0N7JQQ1   A0A0P0QLU2   A0A2Z4EVR6   A0A2Z5BST2   A0A194RNL9   M4T4G3   A0A059XRP6   A0A194QH23   O96310   A0A3S2TLL4   I1XB02   A0A0E3XBL1   I6ZY07   I3VR34   A0A059XHF1   A0A164LU87   R9R5D5   A0A1J0I9Q3   X2GG79   A0A0H4P5L6   G8EME4   G8EME3   G8IJI2   K7W8M2   I3NWV8   I3VR32   A0A2H4QGA9   A0A2H4QG92   U3PWV7   I3VR35   A0A023NEE5   A0A2J7QMF8   A0A1B6GWK5   A0A1B6CL66   A0A1B6E816   A0A023F678   A0A059XRL5   A0A2H8TPJ2   A0A0S1Z233   A0A089FYX0   A0A059XRQ0   T1ICG6   X1WXB1   A0A0A7RS32   A0A2S2PMN5   A0A2S2QG40   E0VEK3   D6WF72   A0A139WKL1   A0A141BN13   A0A1U9JHP1   A0A0H3XSN1   I3VR33   A0A097P7A6   A0A146M8X0   A0A0K8TI63   A0A023NE85   A0A059XLU6   N6TNS6   A0A1B0D1T0   A0A0Q9W2A2   A0A0Q9XLE3   A0A0Q9X8R7   A0A0Q9XIT7   A0A0Q9XB63   A0A0Q9XKI2   A0A0Q9X8N8   A0A0Q9X9F1   A0A0Q9XHR0   A0A0Q9XLW9   A0A0Q9XFX2   A0A0Q9XK82   A0A0Q9X8T6   A0A0Q9XIS4   A0A0Q9X8X3   B4KTR6   A0A0Q9X9I6   A0A0Q9XIC2   A0A0Q9X8Q4   A0A0Q9X8P8   A0A0Q9X8Q5   A0A0L0BUZ9   A0A0Q9W2V7   A0A0Q9W292   A0A0Q9W2M0  

Pubmed

19121390    24267694    29891375    29626986    26354079    24098400    + More
10727900    22567170    23603125    27845250    22761165    29191465    22982600    23010195    24485316    25474469    25447916    20566863    18362917    19820115    25330781    26823975    24607641    23537049    17994087    26108605   

EMBL

BABH01031039    BABH01031040    BABH01031041    BABH01031042    NWSH01000255    PCG77985.1    + More
PCG77984.1    PCG77987.1    KR815500    ALL55466.1    KR815506    ALL55472.1    KR815503    ALL55469.1    JQ354988    AFC36359.1    KR815498    ALL55464.1    KR815507    ALL55473.1    KR815505    ALL55471.1    KR815501    ALL55467.1    KJ573634    AIA23855.1    KF641862    AHB33498.1    KR815499    ALL55465.1    KR815502    ALL55468.1    KR815504    ALL55470.1    MG712298    AWV67093.1    MF623806    AXA98483.1    KQ460124    KPJ17611.1    KC355370    AGH68757.1    KJ573633    AIA23854.1    KQ458859    KPJ04843.1    AF009346    AAD01425.1    RSAL01000064    RVE49452.1    JQ799046    AFI80904.1    KP213290    AKC03558.2    JX082287    AFN70719.1    JQ769305    AFK84958.1    KJ573635    AIA23856.1    KR088972    AMN82804.1    JX481776    AGI62938.1    KX519762    APC65631.1    KJ135037    AHN16453.1    KP721560    AKP49172.1    JF926694    AER25355.1    JF926693    AER25354.1    JN801028    AET09964.1    JX467684    AFW97408.1    JF927788    AEI91094.1    JQ769303    AFK84956.1    MG013971    ATX64238.1    MG013970    ATX64237.1    KF306296    AGW82429.1    JQ769306    AFK84959.1    KF734669    AHW99829.1    NEVH01013210    PNF29762.1    GECZ01003016    JAS66753.1    GEDC01023089    GEDC01010234    JAS14209.1    JAS27064.1    GEDC01023993    GEDC01003241    JAS13305.1    JAS34057.1    GBBI01001994    JAC16718.1    KJ573637    AIA23858.1    GFXV01004105    MBW15910.1    KT029915    ALM96708.1    KM034750    AIP90097.1    KJ573638    AIA23859.1    ACPB03003001    ACPB03003002    ABLF02024172    ABLF02024173    ABLF02024174    KJ933863    AJA41114.1    GGMR01017929    MBY30548.1    GGMS01007504    MBY76707.1    DS235093    EEB11809.1    KQ971327    EEZ99829.2    KYB28433.1    KP733848    AKM95170.1    KY244091    AQR59331.1    KP733849    AKM95171.1    JQ769304    AFK84957.1    KM216386    AIU40166.1    GDHC01002914    JAQ15715.1    GBRD01000538    JAG65283.1    KF734670    AHW99830.1    KJ573636    AIA23857.1    APGK01057438    APGK01057439    APGK01057440    APGK01057441    APGK01057442    APGK01057443    APGK01057444    APGK01057445    APGK01057446    KB741280    ENN70900.1    AJVK01022304    AJVK01022305    CH940648    KRF79235.1    CH933808    KRG04792.1    KRG04783.1    KRG04798.1    KRG04793.1    KRG04791.1    KRG04784.1    KRG04797.1    KRG04788.1    KRG04787.1    KRG04794.1    KRG04785.1    KRG04799.1    KRG04782.1    KRG04796.1    EDW09649.2    KRG04789.1    KRG04786.1    KRG04790.1    KRG04795.1    KRG04800.1    JRES01001421    KNC23059.1    KRF79234.1    KRF79242.1    KRF79229.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000283053    UP000235965    + More
UP000015103    UP000007819    UP000009046    UP000007266    UP000019118    UP000092462    UP000008792    UP000009192    UP000037069   

PRIDE

H9JUT5   

Pfam

PF00520   Ion_trans        + More
PF08454   RIH_assoc
PF06459   RR_TM4-6
PF02815   MIR
PF01365   RYDR_ITPR
PF02026   RyR
PF00622   SPRY
PF08709   Ins145_P3_rec
PF13499   EF-hand_7

Interpro

IPR005821   Ion_trans_dom        + More
IPR011992   EF-hand-dom_pair       
IPR009460   Ryanrecept_TM4-6       
IPR013662   RIH_assoc-dom       
IPR003032   Ryanodine_rcpt       
IPR035764   SPRY2_RyR       
IPR016093   MIR_motif       
IPR013333   Ryan_recept       
IPR003877   SPRY_dom       
IPR035910   RyR/IP3R_RIH_dom_sf       
IPR035762   SPRY3_RyR       
IPR013320   ConA-like_dom_sf       
IPR036300   MIR_dom_sf       
IPR001870   B30.2/SPRY       
IPR035761   SPRY1_RyR       
IPR014821   Ins145_P3_rcpt       
IPR000699   RIH_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR016024   ARM-type_fold       
IPR002048   EF_hand_dom       

SUPFAM

SSF47473   SSF47473        + More
SSF100909   SSF100909       
SSF49899   SSF49899       
SSF82109   SSF82109       
SSF48371   SSF48371       

CDD

cd12878  SPRY2_RyR
cd12877  SPRY1_RyR
cd12879  SPRY3_RyR

ProteinModelPortal

H9JUT5   A0A2A4K134   A0A2A4K254   A0A2A4K169   A0A0P0QLS4   A0A0P0QLT4   + More
A0A0P0QM29   H9CNL0   A0A0P0QM31   A0A0P0QM39   A0A0P0QM12   A0A0P0QLR0   A0A059XMJ0   V5RE97   A0A0P0QM17   A0A0N7JQQ1   A0A0P0QLU2   A0A2Z4EVR6   A0A2Z5BST2   A0A194RNL9   M4T4G3   A0A059XRP6   A0A194QH23   O96310   A0A3S2TLL4   I1XB02   A0A0E3XBL1   I6ZY07   I3VR34   A0A059XHF1   A0A164LU87   R9R5D5   A0A1J0I9Q3   X2GG79   A0A0H4P5L6   G8EME4   G8EME3   G8IJI2   K7W8M2   I3NWV8   I3VR32   A0A2H4QGA9   A0A2H4QG92   U3PWV7   I3VR35   A0A023NEE5   A0A2J7QMF8   A0A1B6GWK5   A0A1B6CL66   A0A1B6E816   A0A023F678   A0A059XRL5   A0A2H8TPJ2   A0A0S1Z233   A0A089FYX0   A0A059XRQ0   T1ICG6   X1WXB1   A0A0A7RS32   A0A2S2PMN5   A0A2S2QG40   E0VEK3   D6WF72   A0A139WKL1   A0A141BN13   A0A1U9JHP1   A0A0H3XSN1   I3VR33   A0A097P7A6   A0A146M8X0   A0A0K8TI63   A0A023NE85   A0A059XLU6   N6TNS6   A0A1B0D1T0   A0A0Q9W2A2   A0A0Q9XLE3   A0A0Q9X8R7   A0A0Q9XIT7   A0A0Q9XB63   A0A0Q9XKI2   A0A0Q9X8N8   A0A0Q9X9F1   A0A0Q9XHR0   A0A0Q9XLW9   A0A0Q9XFX2   A0A0Q9XK82   A0A0Q9X8T6   A0A0Q9XIS4   A0A0Q9X8X3   B4KTR6   A0A0Q9X9I6   A0A0Q9XIC2   A0A0Q9X8Q4   A0A0Q9X8P8   A0A0Q9X8Q5   A0A0L0BUZ9   A0A0Q9W2V7   A0A0Q9W292   A0A0Q9W2M0  

PDB

5GOA     E-value=1.12995e-136,     Score=1246

KEGG

101739070    K04962 ryanodine receptor 2 | (RefSeq) ryanodine receptor 44F

GO

GO:0016021   GO:0005623   GO:0005219   GO:0005509   GO:0005216   GO:0006811   GO:0016020   GO:0016773   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930   GO:0055085  

Length:

386

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

78.17739

Exp number, first 60 AAs:

11.36787

Total prob of N-in:

0.42995

POSSIBLE N-term signal

sequence

inside

1  -  137

TMhelix

138  -  160

outside

161  -  185

TMhelix

186  -  208

inside

209  -  265

TMhelix

266  -  285

outside

286  -  386

 

 

Pi

257.785686

Theta

154.511529

Tajima's D

1.727444

CLR

0.354554

CSRT

0.830608469576521

Interpretation

Uncertain