Silkworm Genome Informatics Database

Gene

KWMTBOMO14357

Annotation

unnamed_protein_product_[Bombyx_mori]

Location

Bomo_Chr24(-):2998922-3026487 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.286

CDS

ATGGTAGACCAGTCAACGATCCCCTTAGCTGATCAAAGATACCATACACCAGCTCCAATTGATCTGTTGTTAGGCTCGGATATCCTCGGACAGGTTTTAGATGGGACTAAAGTCTCGTTGGGGCCCGGCAGGCCAATAGCCTTCGGCACGATATTTGATTTTACATTGTTAGGACCCATACACGATTTGTATACTGCTCCTGTAAGCAAAACTGAATCGGCTCACATTGTCAGCGCACAACCAGAACTCGAGGTATCTACACATGACATTCGCAAGAGCCTTGAGAAGTTCTGGGAATCTGAAGAGCCCCAACTTCATGTTGAAACTACCCCTTTGCAAGATCAGTGTGAAGAAATATTCCGCACTACCACTACTCGTAAACCCTCAGGTCAATATACGGTAACTTTACCCTTTTTACATAATATGCCCGAGCTAGGAAGTACCCATGCCATAGCATTGCGTAGGTTTCTTAATCTTGAAAAGAAGTTACAAGCTGACCCATATCTCCGTGTGAAATACATTGACTTCATGGCAGATTATCAGAAGCTGGGTCACATGTCCCCATGCCACCCGAGTACTTTTGCTCATAAGCCTCACTTCTATATCCCTCATCATGGCATCTTCAAGTCGGGATCAGACAAGCTACGCACTGTTTTTGATGGTAGCTGTAAAAGCTCAAATGGCGTCAGCCTAAATGACTGTTTACACACTGGTCCAGCTCTTCAACAGGACATCGTCGATATTATCTTGTCGTTTAGAACTCATCCTGTAGTTTTCAGCACTGACATTTGTATGATGTTCAGAAACATACTCATACATCCCGATCAGAGGCGTTACCAGCTCATTCTCTGGCGCTCTTCGCCAGATCAGCCCCTGCTTACATATGCCTTAAACACTGTTACATACGGGTTAAGATCAAGCCCATATCATGCTATACGCACTTTAATCCAATTAGCGGATGATGAAGGTCATCGCTATCCTGCAGCTGCTCAAGTGCTGCGCAAGTCCATATTCGTCGATGATATTCTCACTGGTCACGATTCTGTAGTAAAGGCTCAAGCTCTCCAAAACGACTTGATTAACTTACTAGCCTTAGGTGGTTTTCAGCTCAGTAAATGGACCTCAAACTGCCCTCAGCTTCTCGAAAGATTTCCCGATGATCAGTGTGACATGCCCAAGAACTTTGTCATTAGCCCAGACTCCAACTCCATAAAAGTATTAGACAGTACCATTGTCCTAGCATGGCTAAACACACCTCCTCATAGACTTCAGGTCTTTGAAGCCAACAGGGTTGCCAAGATAACATCCAATCCAATCACCTCCACATGGAAACATGTTCCTACAAACCTGAACCCTGCAGACTGTGCGAGCAGGGGAATGTCTGCCCAGTCACTATCAGCTCATGATCTTTGGTGGTCTCCTAGCTGGCTGAAGGAGCCTCCTGACACCTGGCCCAAAATGCCTCCTGCTCTAGGCCACCATGCGCTACCAGGTCTGAAGCCCAAGAAAGTACCAGCTCATATAGCAGTTCCTGACCTCGACCTTGACTTGCTTACTCGATTCAGTTCTCTCGACAAGCTCGTTGGAGTGACAGCTTGCATAAAACGCTTTATTTTCAATTGTAGACACAACTCAACTGATAGGTGCTCTGGTCCCTTGACAGTTGGAGAACGTAGAGATGCTCTGTTATTCTGGGTTCGCTCTGTTCAACACAATGAGTTTGCGGAAGATATTTACCGTCTTCAGGCAGGCAAGATTTGTACCGTTCGACTTCAGCGTCTTTCACCCTTGATGAAAGATGATCTCTTGAGAGTTGGTGGTCGCCTCACTCATGCGCCAATAAGATACGATGCTCAGCATCCTCTCGTTCTGCCCAGCTCTAGCCCACTAGTTGATCTCATCATAGACCACTATCACAGAATAAACTGTCATCCTGGGGCTGACACATTACACGCTATCCTCCGTCAGCAGTTCTGGATACTCTCAGCACGTCGTGTCATCAGGCATCGCGTGTACAAATGCATTAGATGTTTCCGATATCGCGCTCAGGCCAGAGCTCCGTTGATGGCTGATTTGCCCGCAGACAGGGTCACACCTCAGCCACTCATCCAAGCTCTCTCTCAGCGTTTTTGGACTCTGTGGACCAAATCCTATCTCCATACCCTCCAAACCCGCTCCAAATGGCTTTCCACATCCTCACCTCCTCAAGTTGGAGAGCTCGTCCTCATCAAAGAGGACAATCAGCCCCCGCTGCAATGGAAACTTGGAAGGATTATCCGCACGTTACCCGGCAAGGATGGAGTGATCAGAGTCGTGGATTTGGATACGAAGCATGGAAGTCTGCGGAGACCTGTGTTCAAATTCGATACAAGAGAAGGAGTGACTTCGCATTGGTCGGATCCTACCACCTTAGGAGTGAGAGCAACCTTCAGAAGCAACTCTCGTCCAGCAGTCCTTATTCTTAGTAAATTAAGACCAGAAGACAGCGGTCAATATAGATGCAGAGTGGACTTCATTAAATCACCAACGAAAAATACAAGACTAAACCTAACTGTTCTAATTCCACCAGAGCGACTTATAGTTCTGAACCATGAAGGGAACGAGGTAAACGGAGGAGTTGTCGGACCTTATGACGAGGGAACAGAGGTCAATCTCACTTGTATAGCCGTTGGAGGTCGACCGATTGCACGAGTCTCGTGGTGGAAAGCGCACGCACTCCTCGCGAACTCCGAAGCGAGAGCTACTGTCTCCTTCAGGGTTCAAAGGTCGGACTACGGCACCGACGTCATGTGTCAGGCAGTAACTGATCCCCTAATATCACCCGTCTCGGAGAATATATCAATAGACGTGAATCACGAGCATACGGCCCCACCTGATGGTGAGTGGTTACCGTCGCCCATGGACTTCAGCAATGCCAGGGGCAGAGCCAAGCCGAGGCCTACCGCTTAA

Protein

MVDQSTIPLADQRYHTPAPIDLLLGSDILGQVLDGTKVSLGPGRPIAFGTIFDFTLLGPIHDLYTAPVSKTESAHIVSAQPELEVSTHDIRKSLEKFWESEEPQLHVETTPLQDQCEEIFRTTTTRKPSGQYTVTLPFLHNMPELGSTHAIALRRFLNLEKKLQADPYLRVKYIDFMADYQKLGHMSPCHPSTFAHKPHFYIPHHGIFKSGSDKLRTVFDGSCKSSNGVSLNDCLHTGPALQQDIVDIILSFRTHPVVFSTDICMMFRNILIHPDQRRYQLILWRSSPDQPLLTYALNTVTYGLRSSPYHAIRTLIQLADDEGHRYPAAAQVLRKSIFVDDILTGHDSVVKAQALQNDLINLLALGGFQLSKWTSNCPQLLERFPDDQCDMPKNFVISPDSNSIKVLDSTIVLAWLNTPPHRLQVFEANRVAKITSNPITSTWKHVPTNLNPADCASRGMSAQSLSAHDLWWSPSWLKEPPDTWPKMPPALGHHALPGLKPKKVPAHIAVPDLDLDLLTRFSSLDKLVGVTACIKRFIFNCRHNSTDRCSGPLTVGERRDALLFWVRSVQHNEFAEDIYRLQAGKICTVRLQRLSPLMKDDLLRVGGRLTHAPIRYDAQHPLVLPSSSPLVDLIIDHYHRINCHPGADTLHAILRQQFWILSARRVIRHRVYKCIRCFRYRAQARAPLMADLPADRVTPQPLIQALSQRFWTLWTKSYLHTLQTRSKWLSTSSPPQVGELVLIKEDNQPPLQWKLGRIIRTLPGKDGVIRVVDLDTKHGSLRRPVFKFDTREGVTSHWSDPTTLGVRATFRSNSRPAVLILSKLRPEDSGQYRCRVDFIKSPTKNTRLNLTVLIPPERLIVLNHEGNEVNGGVVGPYDEGTEVNLTCIAVGGRPIARVSWWKAHALLANSEARATVSFRVQRSDYGTDVMCQAVTDPLISPVSENISIDVNHEHTAPPDGEWLPSPMDFSNARGRAKPRPTA

Uniprot

D7EKM8 J9LNP3

Pubmed

18362917 19820115

EMBL

DS497760 EFA13224.1 ABLF02040487 ABLF02059921 ABLF02067163

Proteomes

UP000007266 UP000007819

Pfam

PF17921   Integrase_H2C2        + More
PF05585   DUF1758
PF18701   DUF5641
PF05380   Peptidase_A17

Interpro

IPR012337   RNaseH-like_sf        + More
IPR008042   Retrotrans_Pao
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR008737   Peptidase_asp_put
IPR040676   DUF5641
IPR001969   Aspartic_peptidase_AS
IPR021109   Peptidase_aspartic_dom_sf

SUPFAM

SSF53098 SSF53098 + More
SSF50630 SSF50630

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

D7EKM8 J9LNP3

PDB

5ZO2 E-value=9.66964e-06, Score=121

KEGG

101738656 no KO assigned | (RefSeq) nephrin-like

GO

GO:0003676 GO:0015074 GO:0004190 GO:0005515 GO:0006662 GO:0015035 GO:0004674 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

982

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01251

Exp number, first 60 AAs:

0.0078

Total prob of N-in:

0.00058

outside

1 - 982

Pi

187.009019

Theta

158.449151

Tajima's D

1.025032

CLR

0.115284

CSRT

0.669016549172541

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree