Gene

KWMTBOMO14343

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]

Location

Bomo_Chr24(+):2571900-2573513      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.069

CDS

ATGGCATTTTCATTAGTTACAAGTGATAGTGACAGTGATCTAGAGGGTTTAGGCCAATTATCGGATTGGGATAATAGTGCTTCTGATAGCGATAGTGATGATATTGATCTTCACGATGACGGCTTTCGGGGACGTCGTGCTTCTCGAAAAATCCGAAGAATCAACTACATGCAGAGTCTCGATGATGCCGAGTTCACCTTTAGGTTTAGGAATCATGGAGTTTCTCCAATACATCAACTCTTATTGACGTTACGATTCTATGCATTGGGTACCATGCTCATCTCCATAGCCGACTTTGTTGATGTGTCGAAATCGACAGCAGGCAGAATTGTGAGAGACATATCAATATGCATTGCTAGATTGTATGATAAGTATATACATGTGCAACAAGGAGGAGCGGAGAAATTTCACAGAATTGCTGGATTTCCTCGGGTTCTTGGAACAATTGATTGTACACATATTCGCATACAATCTCCATGCCGCTTAGTTGGAGAAGAATTTAGGAATAGGAAAGGTTACTTCTCCTATAACATCCAAGCTGTATGTGATGCTGATTTGAGACTAATGAATGTTGTAGCTCGTTGGCCAGGTTCTGCACATGATGCAACTATTTTTAACAATTCGGTTCTGAGAGCTCAATGTGATGCAGGTCAGTTTGGTAACCATTGGTTACTTGGAGATAGTGCCTACCCCAACAGACCTTACTTGCTGACTCCTGTTTTGAATCCAGTGACAGAAGCTGAGCTGAGATACAATCAAGCACATATAAAAACTAGGAACACCATTGAACGCACATTTGGAGTCTGGAAACGTCGCTTCCCTGTGTTAGCACTAACACTCCGTTTGTCACAGCCAGTAATGCAGTCAGTGATAATAGCCACTGCTGTATTACACAACATCTGCAGGAATCACAGCCTTGAGGAAGTACCTCCAGAAGTTGAGATACTGGGTGGAGACAATAATGTTGAAGATGGCTCTCAAAATATGGATATGCAAGATATCAGTGGAAGAACTGATCTTATAAATAATTTTTTTAATTCAGAAGAGAACTAA

Protein

MAFSLVTSDSDSDLEGLGQLSDWDNSASDSDSDDIDLHDDGFRGRRASRKIRRINYMQSLDDAEFTFRFRNHGVSPIHQLLLTLRFYALGTMLISIADFVDVSKSTAGRIVRDISICIARLYDKYIHVQQGGAEKFHRIAGFPRVLGTIDCTHIRIQSPCRLVGEEFRNRKGYFSYNIQAVCDADLRLMNVVARWPGSAHDATIFNNSVLRAQCDAGQFGNHWLLGDSAYPNRPYLLTPVLNPVTEAELRYNQAHIKTRNTIERTFGVWKRRFPVLALTLRLSQPVMQSVIIATAVLHNICRNHSLEEVPPEVEILGGDNNVEDGSQNMDMQDISGRTDLINNFFNSEEN

Uniprot

H9JFA0   A0A3S2LMD2   A0A0L7L248   A0A2A4IXD7   A0A0L7L4N7   A0A2H1VXT4   + More
A0A3S2LRZ4   A0A0L7LMF9   A0A1I8NJZ2   A0A0L7LEJ9   A0A1Y1M7D0   J9KF22   N6UD62   A0A1Y1MBC4   A0A1Y1KLA7   J9L1W5   A0A1Y1MXP7   J9M943   N6TYG1   A0A1Y1MC35   A0A3S2P3B6   X1WZQ8   J9JM90   J9KWE0   A0A1Y1MZ45   J9KLH0   A0A2P8Z014   A0A2S2NS44   X1X0S1   A0A3S2KYY9   X1XKK1   C4WUD0   U4U597   A0A1Y1KQW0   J9JZ87   N6TYP6   A0A1Y1M620   A0A0L7LT10   A0A1Y1KFZ4   S4PD89   U4U2V2   A0A0J7K466   J9LL64   D6WYB2   C4WVD2   J9JJW2   H9JKZ1   D7EKQ7   J9M2S7   J9L523   A0A0A9ZIH6   U4U4Y9   A0A1B6KEC0   J9LUU4   A0A1Y1N6P0   X1WR39   J9LUG4   J9L1A7   J9KQN6   A0A146L3K0   A0A158NUI4   J9JXP4   A0A0A9YXL9   J9M1Z2   N6TRS6   J9KLG9   A0A2S2Q8E2   A0A3R7PU27   J9L0T4   J9M4N8   A0A3Q0J0W5  

Pubmed

19121390    26227816    25315136    28004739    23537049    29403074    + More
23622113    18362917    19820115    25401762    26823975    21347285   

EMBL

BABH01027007    RSAL01000057    RVE49808.1    JTDY01003471    KOB69505.1    NWSH01005652    + More
PCG64078.1    JTDY01002978    KOB70380.1    ODYU01004776    SOQ45014.1    RSAL01000314    RVE42625.1    JTDY01000543    KOB76728.1    JTDY01001465    KOB73799.1    GEZM01038551    JAV81614.1    ABLF02061340    APGK01040149    KB740975    ENN76582.1    GEZM01038550    JAV81615.1    GEZM01080383    JAV62179.1    ABLF02019815    ABLF02019816    GEZM01017837    GEZM01017836    GEZM01017835    JAV90434.1    ABLF02017542    APGK01006977    KB737050    ENN83098.1    GEZM01035464    GEZM01035462    JAV83213.1    RSAL01001934    RVE40628.1    ABLF02008641    ABLF02011808    ABLF02016431    ABLF02016012    ABLF02055237    GEZM01017851    GEZM01017841    GEZM01017840    JAV90428.1    ABLF02022234    ABLF02058482    PYGN01000260    PSN49845.1    GGMR01007355    MBY19974.1    ABLF02020738    RSAL01000416    RVE41817.1    ABLF02020736    ABLF02006541    ABLF02042859    AK341014    BAH71500.1    KB632043    ERL88242.1    GEZM01076717    JAV63704.1    ABLF02036739    APGK01005289    KB736163    ENN83248.1    GEZM01039795    GEZM01039794    GEZM01039793    GEZM01039792    GEZM01039791    GEZM01039790    GEZM01039789    JAV81183.1    JTDY01000151    KOB78582.1    GEZM01088054    JAV58326.1    GAIX01003761    JAA88799.1    KB631844    ERL86663.1    LBMM01014280    KMQ85248.1    ABLF02019988    ABLF02066411    KQ971356    EFA09128.1    AK341464    BAH71852.1    ABLF02011428    BABH01011318    DS497765    EFA11633.1    ABLF02011053    ABLF02035722    GBHO01000839    JAG42765.1    KB632031    ERL88142.1    GEBQ01030196    JAT09781.1    ABLF02007356    GEZM01016480    JAV91267.1    ABLF02063305    ABLF02024993    ABLF02024998    ABLF02025000    ABLF02008686    ABLF02034876    GDHC01016852    JAQ01777.1    ADTU01026491    ABLF02008545    GBHO01005857    GDHC01007230    JAG37747.1    JAQ11399.1    ABLF02028680    APGK01006027    KB736544    ENN83189.1    ABLF02017360    GGMS01004279    MBY73482.1    QCYY01000797    ROT82609.1    ABLF02003216    ABLF02015087   

Proteomes

UP000005204    UP000283053    UP000037510    UP000218220    UP000095301    UP000007819    + More
UP000019118    UP000245037    UP000030742    UP000036403    UP000007266    UP000005205    UP000283509    UP000079169   

PRIDE

H9JFA0    H9JKZ1   

Pfam

PF13359   DDE_Tnp_4        + More
PF16087   DUF4817
PF05699   Dimer_Tnp_hAT

Interpro

IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       
IPR032135   DUF4817       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF53098   SSF53098       

ProteinModelPortal

H9JFA0   A0A3S2LMD2   A0A0L7L248   A0A2A4IXD7   A0A0L7L4N7   A0A2H1VXT4   + More
A0A3S2LRZ4   A0A0L7LMF9   A0A1I8NJZ2   A0A0L7LEJ9   A0A1Y1M7D0   J9KF22   N6UD62   A0A1Y1MBC4   A0A1Y1KLA7   J9L1W5   A0A1Y1MXP7   J9M943   N6TYG1   A0A1Y1MC35   A0A3S2P3B6   X1WZQ8   J9JM90   J9KWE0   A0A1Y1MZ45   J9KLH0   A0A2P8Z014   A0A2S2NS44   X1X0S1   A0A3S2KYY9   X1XKK1   C4WUD0   U4U597   A0A1Y1KQW0   J9JZ87   N6TYP6   A0A1Y1M620   A0A0L7LT10   A0A1Y1KFZ4   S4PD89   U4U2V2   A0A0J7K466   J9LL64   D6WYB2   C4WVD2   J9JJW2   H9JKZ1   D7EKQ7   J9M2S7   J9L523   A0A0A9ZIH6   U4U4Y9   A0A1B6KEC0   J9LUU4   A0A1Y1N6P0   X1WR39   J9LUG4   J9L1A7   J9KQN6   A0A146L3K0   A0A158NUI4   J9JXP4   A0A0A9YXL9   J9M1Z2   N6TRS6   J9KLG9   A0A2S2Q8E2   A0A3R7PU27   J9L0T4   J9M4N8   A0A3Q0J0W5  

KEGG

105841276    K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) putative nuclease HARBI1

GO

GO:0016021   GO:0046983  

Length:

350

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.69157

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02127

outside

1  -  350

 

 

Pi

174.4814

Theta

193.097399

Tajima's D

-0.399009

CLR

664.476889

CSRT

0.260486975651217

Interpretation

Uncertain