Gene

KWMTBOMO14323  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008133

Annotation

PREDICTED:_limbic_system-associated_membrane_protein-like_[Bombyx_mori]

Location

Bomo_Chr24(-):1918200-1929310      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.001 Nuclear   Reliability : 1.791

CDS

ATGCATCGTCGTCAAGCTGAAGATGAAGTGAACTTCGAGGACCCTCAGGCTGATGAAGGGTTTGACGAGTTCGGTGGTGAAGAAACCCAAAATGACACAGGTGATAGTCCCGCAGCGCAACGTGTGGAACCAGCCTCCATTTCAACACTACCCACTACATACAAAATAGAAGCGGGGAAAAGTGCCAGACTAGAATGTAACGTGCAACCGGATTCTGCTGTCGTCCAGTGGTGGAGAAATGACGAGCTTTATTTCATGGGAAATGCAAAACTCAAATACGGCCTGACAAAAATTTCTATTGTACCAAACTCCAAGGACTTGCTGATCAAGGACGTGAGCGCTACGGACGCCGGCGTTTACCGATGTGAGATTGTCCAGGATACACCTGTTAGCATCAACCACACTCTAGAAGTATTACAGGCTCCGGTTATAGAGAATTTGACAGCTACCAATGGCGGGTACGTGGTGGAAGGGTCGAATCTCCTGCTGACTTGCAACGTCCACGCTACTCCAGCACCACAGATTATGTGGTCCAGGGAAGTTGCGAATGTCAACGAGCGACTTCGCGAGAACGACGGAGAATTCACCGGGAACAGTCTCTACATCAAGAACGTGAAACGAGAGGAATCCGGGAAGTATTACTGCTATGTGTTGAACGCGCTGGGGCATACGCAGGCTGAAATAGATGTCCATGTTGTTGGGAAACCACGCGTCCACGTTCACAAGACCAGAGTGAATTCGGCCATCAACATCGAAGCGGTATTGCAGTGCACAGCTCACGAGGAACCAGACCTTCACATGCGGTGGTACAAAGACGGAAAACTGATTGAGGATATCTCCACGCAGTACACCGTCTCCACTAACGGTCACCACTCCAATTTGACTGCCACTCCGCTAACGTCACTGGACTTCGGGACTTTCACTTGCGAGGCGGAAAATCTTCATGGCAAGCACAACAGATCCATTGAGCTTGTACAGAGCCCCGTGATTGAAGACGTTTCAGCCGACGGACCCAAGGTCTCTTGGACTGTTCAGTCTCATCAGCCTCTCGAAGAATTGGAACTTCAGCTTAAGCCTCTCAATGCGGCCGGTTCCAGCTGGATACGCTACAATGTGCCGCTACCAAAGCCGAATGGTCACCGTTACGAGATCGTGCACAGAATAGAGAACGACGTCAAGGCCGGGAAATACGAGGTCATGGTGAAGGCCAGAAACACCCACAGCTGGGGCAGCGCCCCAGAACCCGTAACCGTCGATGTCGATCTCGCCAAGACTACACTGTAG

Protein

MHRRQAEDEVNFEDPQADEGFDEFGGEETQNDTGDSPAAQRVEPASISTLPTTYKIEAGKSARLECNVQPDSAVVQWWRNDELYFMGNAKLKYGLTKISIVPNSKDLLIKDVSATDAGVYRCEIVQDTPVSINHTLEVLQAPVIENLTATNGGYVVEGSNLLLTCNVHATPAPQIMWSREVANVNERLRENDGEFTGNSLYIKNVKREESGKYYCYVLNALGHTQAEIDVHVVGKPRVHVHKTRVNSAINIEAVLQCTAHEEPDLHMRWYKDGKLIEDISTQYTVSTNGHHSNLTATPLTSLDFGTFTCEAENLHGKHNRSIELVQSPVIEDVSADGPKVSWTVQSHQPLEELELQLKPLNAAGSSWIRYNVPLPKPNGHRYEIVHRIENDVKAGKYEVMVKARNTHSWGSAPEPVTVDVDLAKTTL

Uniprot

H9JF36   A0A194Q6M6   A0A0N1IPS7   A0A212FFQ8   A0A2W1BLA5   A0A3S2LMJ7   + More
A0A1E1WEQ7   A0A1E1WKL9   A0A1E1WJU3   A0A1E1W589   D6WWS9   Q7PRJ5   A0A1W4WT78   A0A0K2SXN7   Q26475   A0A336K364   U4U8X5   A0A2M4CZT9   A0A2M4CZN6   A0A2M3Z9K8   A0A2S2QLK1   A0A182FBL9   A0A2M3ZI84   A0A2M4CQ09   A0A2M4BIP9   A0A2M3Z9I1   Q16Q42   A0A182YLY0   E0VY29   A0A034WTY0   A0A1Y1NDT2   B4NAS6   A0A336LY04   A0A1I8PPS0   A0A182M9M3   A0A182RBE3   A0A1B6E8A1   A0A1B6DXL8   A0A139WL30   A0A1B6CSK9   W8BFH3   A0A139WLL5   W8BW21   A0A139WKX3   A0A182IJW6   A0A0P8Y162   A0A336KVT7   A0A1J1IC03   A0A182NDJ8   Q1RKQ9   A0A0P8YGL1   A0A0B4LI09   A8JPQ1   A0A1W4V8J6   Q7QCH7   A0A0R1E4V8   A0A0K8WJD6   A0A0R1E5D4   A0A182W3R5   A0A0A9WV33   A0A3B0JF21   A0A182JWE7   E9HF28   I5AN20   A0A0R3NF17   A0A182PK90   A0A182Q3H1   E0VJT9   A0A0P5PA08   A0A0M4EVR6   A0A1I8JVM3   A0A0Q9XCR2   A0A0Q9X2M3   A0A0K2T6P5   B4M608   A0A154P6Q5   A0A0Q9W0S3   A0A0P5HZP7   A0A0P5S5F3   A0A0K2U3F6   A0A1S4FT87   A0A0P6H348   A0A0K2U463   A0A0K2SVD6   A0A1W4WHN2  

Pubmed

19121390    26354079    22118469    28756777    18362917    19820115    + More
12364791    8625808    23537049    17510324    25244985    20566863    25348373    28004739    17994087    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25401762    21292972    15632085    18057021   

EMBL

BABH01026948    KQ459386    KPJ01188.1    KQ460299    KPJ16160.1    AGBW02008773    + More
OWR52575.1    KZ149980    PZC75819.1    RSAL01000055    RVE49931.1    GDQN01005574    JAT85480.1    GDQN01003576    GDQN01003475    JAT87478.1    JAT87579.1    GDQN01010852    GDQN01003877    GDQN01001558    JAT80202.1    JAT87177.1    JAT89496.1    GDQN01008930    JAT82124.1    KQ971361    EFA08755.2    AAAB01008849    EAA07116.5    HACA01000919    CDW18280.1    X93601    CAA63800.1    UFQS01000098    UFQT01000098    SSW99434.1    SSX19814.1    KB632099    ERL88803.1    GGFL01006617    MBW70795.1    GGFL01006612    MBW70790.1    GGFM01004419    MBW25170.1    GGMS01009197    MBY78400.1    GGFM01007526    MBW28277.1    GGFL01003236    MBW67414.1    GGFJ01003789    MBW52930.1    GGFM01004420    MBW25171.1    CH477762    EAT36511.1    DS235843    EEB18285.1    GAKP01000848    JAC58104.1    GEZM01005513    JAV96124.1    CH964232    EDW80890.2    UFQT01000176    SSX21147.1    AXCM01000171    GEDC01003149    JAS34149.1    GEDC01009152    GEDC01006888    JAS28146.1    JAS30410.1    KQ971321    KYB28719.1    GEDC01020983    JAS16315.1    GAMC01009113    JAB97442.1    KYB28717.1    GAMC01009114    JAB97441.1    KYB28718.1    CH902617    KPU80504.1    UFQS01001070    UFQT01001070    SSX08829.1    SSX28741.1    CVRI01000047    CRK97731.1    BT025151    ABE73321.1    KPU80503.1    AE014297    AHN57570.1    ABW08787.1    AFH06659.1    AAAB01008859    EAA07670.5    CM000160    KRK04278.1    GDHF01001102    JAI51212.1    KRK04277.1    GBHO01034909    JAG08695.1    OUUW01000005    SPP80725.1    GL732633    EFX69618.1    CM000070    EIM52355.2    KRS99745.1    AXCN02001465    DS235226    EEB13645.1    GDIQ01153168    JAK98557.1    CP012526    ALC47480.1    CH933806    KRG02302.1    KRG02301.1    KRG02303.1    HACA01004099    CDW21460.1    CH940652    EDW59084.2    KQ434827    KZC07626.1    KRF78664.1    GDIQ01220799    JAK30926.1    GDIQ01109282    JAL42444.1    HACA01015468    CDW32829.1    GDIQ01024757    JAN69980.1    HACA01015469    CDW32830.1    HACA01000039    CDW17400.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000283053    UP000007266    + More
UP000007062    UP000192223    UP000030742    UP000069272    UP000008820    UP000076408    UP000009046    UP000007798    UP000095300    UP000075883    UP000075900    UP000075880    UP000007801    UP000183832    UP000075884    UP000000803    UP000192221    UP000002282    UP000075920    UP000268350    UP000075881    UP000000305    UP000001819    UP000075885    UP000075886    UP000092553    UP000076407    UP000009192    UP000008792    UP000076502   

PRIDE

H9JF36    Q1RKQ9   

Pfam

PF00047   ig        + More
PF07679   I-set
PF00041   fn3
PF07686   V-set

Interpro

IPR013151   Immunoglobulin        + More
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR003961   FN3_dom       
IPR013098   Ig_I-set       
IPR013106   Ig_V-set       
IPR036116   FN3_sf       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9JF36   A0A194Q6M6   A0A0N1IPS7   A0A212FFQ8   A0A2W1BLA5   A0A3S2LMJ7   + More
A0A1E1WEQ7   A0A1E1WKL9   A0A1E1WJU3   A0A1E1W589   D6WWS9   Q7PRJ5   A0A1W4WT78   A0A0K2SXN7   Q26475   A0A336K364   U4U8X5   A0A2M4CZT9   A0A2M4CZN6   A0A2M3Z9K8   A0A2S2QLK1   A0A182FBL9   A0A2M3ZI84   A0A2M4CQ09   A0A2M4BIP9   A0A2M3Z9I1   Q16Q42   A0A182YLY0   E0VY29   A0A034WTY0   A0A1Y1NDT2   B4NAS6   A0A336LY04   A0A1I8PPS0   A0A182M9M3   A0A182RBE3   A0A1B6E8A1   A0A1B6DXL8   A0A139WL30   A0A1B6CSK9   W8BFH3   A0A139WLL5   W8BW21   A0A139WKX3   A0A182IJW6   A0A0P8Y162   A0A336KVT7   A0A1J1IC03   A0A182NDJ8   Q1RKQ9   A0A0P8YGL1   A0A0B4LI09   A8JPQ1   A0A1W4V8J6   Q7QCH7   A0A0R1E4V8   A0A0K8WJD6   A0A0R1E5D4   A0A182W3R5   A0A0A9WV33   A0A3B0JF21   A0A182JWE7   E9HF28   I5AN20   A0A0R3NF17   A0A182PK90   A0A182Q3H1   E0VJT9   A0A0P5PA08   A0A0M4EVR6   A0A1I8JVM3   A0A0Q9XCR2   A0A0Q9X2M3   A0A0K2T6P5   B4M608   A0A154P6Q5   A0A0Q9W0S3   A0A0P5HZP7   A0A0P5S5F3   A0A0K2U3F6   A0A1S4FT87   A0A0P6H348   A0A0K2U463   A0A0K2SVD6   A0A1W4WHN2  

PDB

5UV6     E-value=2.08706e-16,     Score=210

KEGG

101739440    no KO assigned | (RefSeq) limbic system-associated membrane protein-like

GO

GO:0008046   GO:0005886   GO:0007156   GO:0030424   GO:0050808   GO:0043025   GO:0016021   GO:0042332   GO:0005515   GO:0005975   GO:0004553   GO:0008270   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

427

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00208

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02150

outside

1  -  427

 

 

Pi

211.684275

Theta

178.022671

Tajima's D

1.495112

CLR

0.239146

CSRT

0.787060646967652

Interpretation

Uncertain