Gene

KWMTBOMO14322

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(+):1897961-1899405      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.018

CDS

ATGTACCGGGTACGGTGGGACCCTTCATCGCTTTCCGGTCGTGCGTGGTGTTCCACAGGGGTCGGTTCTCGGCCCCCTCTTGTGGAATATCGGGTACGACTGGGTGCTGAGGGGCGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGATGATTTTAGGGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGAAGGATAAGGAGGCTGGGTCTCGACGTGGCGCTCAATAAATCCGAGGCTCTGTGGTTTCACGGGCCGCGGAGGGCGCCACCCGTCGACACCCACATCGTGGTTGGAGGCGTCCGGATAGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCCTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGGGGACGGCCGGTTCTTTGAGCCGGCTGCTCCCGAATATTGGGGGACCGGATCAGGTTGTGCGCCGTCTCTACGCGGGGGTGGTGCGATCGATGGCCCTGTACGGTGCACCTGTGTGGGCTGAGCCGCGCAACCGGGCCACTATGGCTCGGTTCCTGCGCCGGCCGCAGCGCACCGTTGCCATCAGGGTCATCCGCGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MYRVRWDPSSLSGRAWCSTGVGSRPPLVEYRVRLGAEGRPPPGPPRYLLRGRHVGRGPGDDFRESARLATAGVALVVGRIRRLGLDVALNKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Uniprot

Q868Q4   A0A2W1B333   Q8MY27   Q8MY31   A0A2W1C3J5   Q8MY33   + More
Q8MY35   A0A3S2N998   A0A0J7N1D9   O01419   A0A0J7N7H9   A0A0J7MY07   E2BVR6   A0A0J7JZ13   A0A0J7KQK3   A0A0J7JZF7   A0A0J7KIY5   A0A194R5D3   A0A3L8DDV9   A0A0J7KJH4   A0A0J7N7S8   A0A3L8D2G3   A0A0J7KJG6   A0A0J7KIM6   A0A0J7KIW1   A0A0J7KFG9   A0A0J7KYD2   A0A0J7KLT9   A0A0J7KMU1   A0A0J7K3R6   A0A0J7KWU5   A0A0J7KGJ6   A0A0J7KPZ3   A0A0J7KPR0   A0A0J7NMN5   A0A0J7KP92   A0A0J7K3R2   A0A0J7KRB8   A0A0J7K3F1   A0A0J7KF40   A0A0J7N0R3   A0A0J7KFH2   A0A0J7NAV8   A0A0J7KLH8   A0A0J7KMG5   A0A3S2LNH8   A0A2S2P557   A0A2S2PDK9   A0A0J7MY17   A0A2S2PJ67   A0A0J7NFZ0   A0A0J7KW81   A0A2S2PEU2   A0A2S2PSC1   A0A2S2NME4   A0A3Q0JIB3   A0A2S2P9B0   A0A2S2NQT6   V5I8F3   X1WJY4   D7GY87   X1WPI5  

Pubmed

12644555    28756777    9092665    20798317    26354079    30249741    + More
18362917    19820115   

EMBL

AB090825    BAC57926.1    KZ150386    PZC71062.1    AB078935    BAC06462.1    + More
AB078931    BAC06456.1    KZ149896    PZC78733.1    AB078930    BAC06454.1    AB078929    BAC06452.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    LBMM01008861    KMQ88580.1    LBMM01014132    KMQ85305.1    GL450953    EFN80213.1    LBMM01019839    KMQ83438.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    LBMM01006954    KMQ90166.1    KQ460685    KPJ12887.1    QOIP01000010    RLU18098.1    LBMM01006657    KMQ90417.1    LBMM01008682    KMQ88705.1    QOIP01000031    RLU14697.1    LBMM01006671    KMQ90407.1    LBMM01007036    KMQ90099.1    LBMM01006725    KMQ90373.1    LBMM01008349    KMQ88951.1    LBMM01002052    KMQ95336.1    LBMM01005733    KMQ91252.1    LBMM01005216    KMQ91703.1    LBMM01015018    KMQ84954.1    LBMM01002480    KMQ94776.1    LBMM01007659    KMQ89538.1    LBMM01004505    KMQ92346.1    LBMM01004634    KMQ92224.1    LBMM01003245    KMQ93755.1    LBMM01004697    KMQ92167.1    LBMM01014956    KMQ84982.1    LBMM01003988    KMQ92922.1    LBMM01015025    KMQ84953.1    LBMM01008422    KMQ88894.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01007425    KMQ89740.1    LBMM01005948    KMQ91066.1    LBMM01005465    KMQ91492.1    RSAL01003504    RVE40273.1    GGMR01011974    MBY24593.1    GGMR01014918    MBY27537.1    LBMM01014122    KMQ85315.1    GGMR01016864    MBY29483.1    LBMM01005474    KMQ91485.1    KMQ94772.1    GGMR01015354    MBY27973.1    GGMR01019609    MBY32228.1    GGMR01005740    MBY18359.1    GGMR01012877    MBY25496.1    GGMR01006964    MBY19583.1    GALX01004785    JAB63681.1    ABLF02011238    KQ971864    EFA13315.2    ABLF02016099    ABLF02041594   

Proteomes

UP000283053    UP000036403    UP000008237    UP000053240    UP000279307    UP000079169    + More
UP000007819    UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF00098   zf-CCHC
PF01421   Reprolysin

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q868Q4   A0A2W1B333   Q8MY27   Q8MY31   A0A2W1C3J5   Q8MY33   + More
Q8MY35   A0A3S2N998   A0A0J7N1D9   O01419   A0A0J7N7H9   A0A0J7MY07   E2BVR6   A0A0J7JZ13   A0A0J7KQK3   A0A0J7JZF7   A0A0J7KIY5   A0A194R5D3   A0A3L8DDV9   A0A0J7KJH4   A0A0J7N7S8   A0A3L8D2G3   A0A0J7KJG6   A0A0J7KIM6   A0A0J7KIW1   A0A0J7KFG9   A0A0J7KYD2   A0A0J7KLT9   A0A0J7KMU1   A0A0J7K3R6   A0A0J7KWU5   A0A0J7KGJ6   A0A0J7KPZ3   A0A0J7KPR0   A0A0J7NMN5   A0A0J7KP92   A0A0J7K3R2   A0A0J7KRB8   A0A0J7K3F1   A0A0J7KF40   A0A0J7N0R3   A0A0J7KFH2   A0A0J7NAV8   A0A0J7KLH8   A0A0J7KMG5   A0A3S2LNH8   A0A2S2P557   A0A2S2PDK9   A0A0J7MY17   A0A2S2PJ67   A0A0J7NFZ0   A0A0J7KW81   A0A2S2PEU2   A0A2S2PSC1   A0A2S2NME4   A0A3Q0JIB3   A0A2S2P9B0   A0A2S2NQT6   V5I8F3   X1WJY4   D7GY87   X1WPI5  

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

437

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10281

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.01559

outside

1  -  437

 

 

Pi

26.268572

Theta

2.41169

Tajima's D

-0.129641

CLR

37.462696

CSRT

0.368881555922204

Interpretation

Uncertain