SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14322
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.018
 

Sequence

CDS
ATGTACCGGGTACGGTGGGACCCTTCATCGCTTTCCGGTCGTGCGTGGTGTTCCACAGGGGTCGGTTCTCGGCCCCCTCTTGTGGAATATCGGGTACGACTGGGTGCTGAGGGGCGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGATGATTTTAGGGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGAAGGATAAGGAGGCTGGGTCTCGACGTGGCGCTCAATAAATCCGAGGCTCTGTGGTTTCACGGGCCGCGGAGGGCGCCACCCGTCGACACCCACATCGTGGTTGGAGGCGTCCGGATAGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCCTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGGGGACGGCCGGTTCTTTGAGCCGGCTGCTCCCGAATATTGGGGGACCGGATCAGGTTGTGCGCCGTCTCTACGCGGGGGTGGTGCGATCGATGGCCCTGTACGGTGCACCTGTGTGGGCTGAGCCGCGCAACCGGGCCACTATGGCTCGGTTCCTGCGCCGGCCGCAGCGCACCGTTGCCATCAGGGTCATCCGCGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA
Protein
MYRVRWDPSSLSGRAWCSTGVGSRPPLVEYRVRLGAEGRPPPGPPRYLLRGRHVGRGPGDDFRESARLATAGVALVVGRIRRLGLDVALNKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Summary

EMBL
AB090825    BAC57926.1    KZ150386    PZC71062.1    AB078935    BAC06462.1    + More
AB078931    BAC06456.1    KZ149896    PZC78733.1    AB078930    BAC06454.1    AB078929    BAC06452.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    LBMM01008861    KMQ88580.1    LBMM01014132    KMQ85305.1    GL450953    EFN80213.1    LBMM01019839    KMQ83438.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    LBMM01006954    KMQ90166.1    KQ460685    KPJ12887.1    QOIP01000010    RLU18098.1    LBMM01006657    KMQ90417.1    LBMM01008682    KMQ88705.1    QOIP01000031    RLU14697.1    LBMM01006671    KMQ90407.1    LBMM01007036    KMQ90099.1    LBMM01006725    KMQ90373.1    LBMM01008349    KMQ88951.1    LBMM01002052    KMQ95336.1    LBMM01005733    KMQ91252.1    LBMM01005216    KMQ91703.1    LBMM01015018    KMQ84954.1    LBMM01002480    KMQ94776.1    LBMM01007659    KMQ89538.1    LBMM01004505    KMQ92346.1    LBMM01004634    KMQ92224.1    LBMM01003245    KMQ93755.1    LBMM01004697    KMQ92167.1    LBMM01014956    KMQ84982.1    LBMM01003988    KMQ92922.1    LBMM01015025    KMQ84953.1    LBMM01008422    KMQ88894.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01007425    KMQ89740.1    LBMM01005948    KMQ91066.1    LBMM01005465    KMQ91492.1    RSAL01003504    RVE40273.1    GGMR01011974    MBY24593.1    GGMR01014918    MBY27537.1    LBMM01014122    KMQ85315.1    GGMR01016864    MBY29483.1    LBMM01005474    KMQ91485.1    KMQ94772.1    GGMR01015354    MBY27973.1    GGMR01019609    MBY32228.1    GGMR01005740    MBY18359.1    GGMR01012877    MBY25496.1    GGMR01006964    MBY19583.1    GALX01004785    JAB63681.1    ABLF02011238    KQ971864    EFA13315.2    ABLF02016099    ABLF02041594   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF00098   zf-CCHC
PF01421   Reprolysin
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
437
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10281
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.01559
outside
1  -  437
 
 

Population Genetic Test Statistics

Pi
26.268572
Theta
2.41169
Tajima's D
-0.129641
CLR
37.462696
CSRT
0.368881555922204
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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