Gene

KWMTBOMO14308

Annotation

endonuclease-reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr24(-):1655612-1656670      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.482

CDS

ATGGAAGAAATTTTGATTGCGCTCAAAGAAATAAAGAAAGACCTGGACGAGCAGAGACAAGAAATCCGAGCAACTGGAATTAATGTTACGGATAAAGTATCAAAAAATGTAAACAAAATGCTCGAAGAAAAATTCCTAGTATGGGAAAAAAAGTATGAAAACTTGAAAAAAATAACGGAAAACCAAGAAAAGAGAATCTATTTTCTAGAAAAAGAGGTAAGAAAAAGAAATATAGTATTTTTTGGCATCGAAGAGTCAGAAAAATCGTATGAAAATCTAGAAAATACTATTATTAATTGGATAAGCCAATATCTTAATATTCAGCTAAAGCACTGCGACATACAAGAAGTCAGGAGAGTGGGAAAGAAAGAGGAACGACCACGCCCTATAGTAGTGACCTTCACAACACTAGGTACTAAAATTAAAAGCTGGAAACGAAGAAATACACTAAAAGATACCTATTTCTACATGAAAGAAGATTACCCGAAGTACGTGCTAGAAAAGAGGAAGGGCTTACAAGAGCAGCTACGTATAGAAAGAGAGAAGGGAAATACAGCGTTATTGAAGTATGATAAATTGATCATCCTGCCCAAAACCAATACGAAAAGAAAATTACCCACCTCACCAAACAGCGGCACAACTTCAAAAGTAAACGAGACCTCACAAATAAACAAGAAGAACAAGATTCAAAAACCTGGTACCCCCGTGATAAGATCCAACAGCATCTCCGAGGGAGTTGTTAAACCAGGCATGCTGAACTTCTTGGTGAATAAAAACACCATAACGGCTAGTAATCATAACCCAGGAAAATCAACATAG

Protein

MEEILIALKEIKKDLDEQRQEIRATGINVTDKVSKNVNKMLEEKFLVWEKKYENLKKITENQEKRIYFLEKEVRKRNIVFFGIEESEKSYENLENTIINWISQYLNIQLKHCDIQEVRRVGKKEERPRPIVVTFTTLGTKIKSWKRRNTLKDTYFYMKEDYPKYVLEKRKGLQEQLRIEREKGNTALLKYDKLIILPKTNTKRKLPTSPNSGTTSKVNETSQINKKNKIQKPGTPVIRSNSISEGVVKPGMLNFLVNKNTITASNHNPGKST

Uniprot

A0A2A4KAH5   A0A194RRA2   A0A0L7KMI6   A0A0L7KL25   A0A2H1WF27   D7F178   + More
A0A0L7L607   A0A0L7LL17   A0A2A4JB54   A0A0L7K3H0   A0A0L7K4V6   A0A0L7KQ23   A0A0L7KKY9   A0A0L7LUV7   A0A0L7LJT1   A0A0L7LLD6   A0A0L7LIY0   A0A2H1WS99   A0A0L7LU16   A0A0L7LIU1   D7F177   A0A0L7K2J4   A0A0L7K5L4   A0A0L7LIK1   A0A0L7LNS8   A0A2A4JED5   A0A0L7LDK8   A0A2A4K1M2   A0A069DR53   A0A2A4J3C0   A0A2W1BGL1   A0A2A4J1F3   A0A2A4IX08   D7F179   A0A2H1V475   A0A2H1V457   A0A2A4J942   A0A2A4J436   A0A0L7LNA7   A0A0L7LKR7   A0A0L7L3X8   A0A0L7L7G4   A0A2A4JJB3   A0A1Y1KNT7   A0A3Q0JI62   A0A069DRS2   A0A3Q0JI53   A0A0L7LHT2   A0A147AFY2   H9JKN5   A0A1S3DL14   T1I4Q9  

Pubmed

26354079    26227816    20470440    26334808    28756777    28004739    + More
19121390   

EMBL

NWSH01000023    PCG80652.1    KQ459995    KPJ18566.1    JTDY01008567    KOB64512.1    + More
JTDY01009375    KOB63594.1    ODYU01008249    SOQ51673.1    FJ265563    ADI61831.1    JTDY01002701    KOB70892.1    JTDY01000780    JTDY01000104    JTDY01000008    KOB75906.1    KOB78842.1    KOB79479.1    NWSH01002039    PCG69337.1    JTDY01014369    KOB52037.1    JTDY01010650    KOB58126.1    JTDY01007191    KOB65392.1    JTDY01009161    KOB64038.1    JTDY01000076    KOB79001.1    JTDY01000843    KOB75692.1    JTDY01000640    KOB76373.1    JTDY01000895    KOB75518.1    ODYU01010663    SOQ55918.1    JTDY01000100    KOB78869.1    JTDY01001015    KOB75121.1    FJ265562    ADI61830.1    JTDY01016948    KOB51874.1    JTDY01010526    KOB58179.1    JTDY01000977    KOB75230.1    JTDY01000437    KOB77173.1    NWSH01001771    PCG70189.1    JTDY01001575    KOB73484.1    NWSH01000260    PCG77926.1    GBGD01002698    JAC86191.1    NWSH01003397    PCG66369.1    KZ150150    PZC72845.1    NWSH01004020    PCG65566.1    NWSH01005231    PCG64345.1    FJ265564    ADI61832.1    ODYU01000586    SOQ35631.1    ODYU01000585    SOQ35630.1    NWSH01002532    PCG68054.1    NWSH01003169    PCG66835.1    JTDY01000511    KOB76839.1    JTDY01000743    KOB76037.1    JTDY01003098    KOB70157.1    JTDY01002536    KOB71226.1    NWSH01001196    PCG72157.1    GEZM01082533    JAV61335.1    GBGD01002523    JAC86366.1    JTDY01001071    KOB74965.1    GCES01008982    JAR77341.1    BABH01024878    ACPB03011704    ACPB03011705    ACPB03011706    ACPB03011707    ACPB03011708    ACPB03011709    ACPB03011710    ACPB03011711    ACPB03011712    ACPB03011713   

Proteomes

UP000218220    UP000053240    UP000037510    UP000079169    UP000005204    UP000015103    + More

PRIDE

D7F178    D7F177    D7F179    H9JKN5   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00501   AMP-binding

Interpro

IPR004244   Transposase_22        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR027124   Swc5/CFDP2       
IPR020845   AMP-binding_CS       
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.40.50.12780    

ProteinModelPortal

A0A2A4KAH5   A0A194RRA2   A0A0L7KMI6   A0A0L7KL25   A0A2H1WF27   D7F178   + More
A0A0L7L607   A0A0L7LL17   A0A2A4JB54   A0A0L7K3H0   A0A0L7K4V6   A0A0L7KQ23   A0A0L7KKY9   A0A0L7LUV7   A0A0L7LJT1   A0A0L7LLD6   A0A0L7LIY0   A0A2H1WS99   A0A0L7LU16   A0A0L7LIU1   D7F177   A0A0L7K2J4   A0A0L7K5L4   A0A0L7LIK1   A0A0L7LNS8   A0A2A4JED5   A0A0L7LDK8   A0A2A4K1M2   A0A069DR53   A0A2A4J3C0   A0A2W1BGL1   A0A2A4J1F3   A0A2A4IX08   D7F179   A0A2H1V475   A0A2H1V457   A0A2A4J942   A0A2A4J436   A0A0L7LNA7   A0A0L7LKR7   A0A0L7L3X8   A0A0L7L7G4   A0A2A4JJB3   A0A1Y1KNT7   A0A3Q0JI62   A0A069DRS2   A0A3Q0JI53   A0A0L7LHT2   A0A147AFY2   H9JKN5   A0A1S3DL14   T1I4Q9  

KEGG

NA   

GO

GO:0004519   GO:0003964   GO:0003824  

PANTHER

PTHR11505   PTHR23227  

Length:

272

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00099

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01290

outside

1  -  272

 

 

Pi

229.195771

Theta

152.40338

Tajima's D

1.71174

CLR

481.519928

CSRT

0.834808259587021

Interpretation

Uncertain