SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14306
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841899?_partial_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.3 Peroxisomal   Reliability : 1.169
 

Sequence

CDS
ATGGACGGTGATGCCAAAATTTATATAAATTTAATCTGTGCCCGCACTCAAATAAGGTACCACCATCCTCCTGCGGGGTATCGTCCCATCGTGTTGCTGGACGAGGCGGGAAAACTGCTCGAGCGAGTGGTGGCCGCCCGCATCGTCCAGCACCTGACGGGAGTGGGTCCTGATCTGTCAGCGGAGCAGTTCGGATTCAGGGAGGGCCGCTCGACCATTGACGCGGTGATGCGCGTGCGCGCCCTCTCTGATGAGGCTGTCAGCCGGGGCGGGGTTGCACTGGCGGTGTCCCTGGACATCGCCAATGCGTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGCAGTATCACGGCGTCCCTGCGTATCTCCGTCGGCTGATCGGGTCCTACCTCGAGGATAGGTCGGTCGTGTGCACCGGGCACGGTGGGACGGTGCTCCGCTTCCCCGTCCAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCTTGTGGAACATCGGCTACGACTGGGTCTTGCGTGGCACCCTAAGCACTCCTCTCCCGGGTCTGAGCGTAGTTTGCTACGCGGACGACACTTTGGTCGTGGCCCGGGGGAGGGACTTGCGAGAGTCTGCCCGTCTTTCCTGCGCGGGGGTGGCCTTCGTCATCGGCAGGATCCGACGGTTGGGTCTGGAGGTGGCGCTTGATAAATCCCAGGCCCTGTTGTTTCACGGGGCCCGGAGAGCGCCGCCTCAGGGGGCCCACCTCGTGATCGGAGGCGTTCGCGTCGAGATCGAGGCAACCGGGTTGCGGTACCTCGGTCTCGTACTGGACGGTCGTTGGAGCTTCCGCGCTCACTTTGAAAGATTAGGTCCCCGACTGATGGCGGCTGCCGGCTCGCTGAGTCGGCTGTTGCCGAACGTCGGGGGGCCTGACGTGGTAGTGCGTCGCCTCTACACGGGGGTGGTGCGGTCGATGGCACTGTACGGGGCTCCCGTGTGGTGCCACGCCCTGACCCGTGACAACGTTGCGGCGTTGCGACGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATACCGCACCGTCTCGTTTGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTAGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGCGCGGCGGAAGTTCGAGCGCGGAAACTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCACCTACGGGCGACGGACTGTCGAGGCGATCCGCCCGGTCCTCTCGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGAGCGACGCAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGTCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCACCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGAGCCGGGGTTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA
Protein
MDGDAKIYINLICARTQIRYHHPPAGYRPIVLLDEAGKLLERVVAARIVQHLTGVGPDLSAEQFGFREGRSTIDAVMRVRALSDEAVSRGGVALAVSLDIANAFNTLPWSVIAGALQYHGVPAYLRRLIGSYLEDRSVVCTGHGGTVLRFPVQRGVPQGSVLGPLLWNIGYDWVLRGTLSTPLPGLSVVCYADDTLVVARGRDLRESARLSCAGVAFVIGRIRRLGLEVALDKSQALLFHGARRAPPQGAHLVIGGVRVEIEATGLRYLGLVLDGRWSFRAHFERLGPRLMAAAGSLSRLLPNVGGPDVVVRRLYTGVVRSMALYGAPVWCHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPTYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCTAFAEQRRVLVAKIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGVRRRAFVQLQPL

Summary

EMBL
AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    LBMM01012027    KMQ86470.1    KZ149896    PZC78733.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    LBMM01006954    KMQ90166.1    LBMM01006671    KMQ90407.1    RSAL01003504    RVE40273.1    LBMM01004272    KMQ92618.1    LBMM01006657    KMQ90417.1    LBMM01019839    KMQ83438.1    LBMM01006725    KMQ90373.1    LBMM01008682    KMQ88705.1    LBMM01019838    KMQ83439.1    LBMM01006063    KMQ90967.1    LBMM01005733    KMQ91252.1    LBMM01008448    KMQ88867.1    LBMM01007036    KMQ90099.1    LBMM01002052    KMQ95336.1    LBMM01007425    KMQ89740.1    LBMM01015018    KMQ84954.1    LBMM01005948    KMQ91066.1    LBMM01002480    KMQ94776.1    LBMM01003245    KMQ93755.1    LBMM01004634    KMQ92224.1    LBMM01015025    KMQ84953.1    KMQ94772.1    LBMM01012412    KMQ86235.1    LBMM01004505    KMQ92346.1    LBMM01014956    KMQ84982.1    LBMM01003988    KMQ92922.1    LBMM01008278    KMQ89009.1    LBMM01003575    KMQ93366.1    LBMM01014122    KMQ85315.1    LBMM01005465    KMQ91492.1    LBMM01008422    KMQ88894.1    GGMR01014195    MBY26814.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02011238    LBMM01005474    KMQ91485.1    LBMM01005216    KMQ91703.1    GGMR01000779    MBY13398.1    LBMM01004262    KMQ92649.1    GGMR01011682    MBY24301.1    LBMM01004261    KMQ92650.1    KU543683    AMS38371.1    LBMM01005845    KMQ91162.1    GGMR01004600    MBY17219.1    GGMR01015159    MBY27778.1    ABLF02041886    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    GFXV01003903    MBW15708.1    GALX01004785    JAB63681.1    LBMM01015285    KMQ84870.1    GFXV01002090    MBW13895.1    GGFK01005660    MBW38981.1    ABLF02009991    ABLF02009992    ABLF02054952    ABLF02034925    ABLF02059310    ABLF02013358    ABLF02013361    ABLF02054869    LBMM01012322    LBMM01012138    KMQ86282.1    KMQ86387.1    GALA01001777    JAA93075.1    GGMR01006838    MBY19457.1    ABLF02005203    ABLF02041316    GGFJ01001727    MBW50868.1    GGFJ01001369    MBW50510.1    GAKP01002292    JAC56660.1    GAMC01020517    JAB86038.1    GAMC01020519    GAMC01020515    JAB86040.1    GGFJ01001439    MBW50580.1    AJ278684    CAB99192.1    GGFJ01001370    MBW50511.1    ABLF02004854    ABLF02041317    ABLF02021100    KQ971309    EEZ99146.1    ABLF02041557    GGMR01015354    MBY27973.1    GALA01001776    JAA93076.1    GGFL01001583    MBW65761.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF01421   Reprolysin
PF00098   zf-CCHC
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=6.21718e-06,     Score=121

Ontologies

Topology

Length:
582
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.28446
Exp number, first 60 AAs:
0.000690000000000001
Total prob of N-in:
0.01409
outside
1  -  582
 
 

Population Genetic Test Statistics

Pi
22.055458
Theta
24.073289
Tajima's D
-0.835668
CLR
0.204592
CSRT
0.168541572921354
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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