Gene

KWMTBOMO14305

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(+):1372126-1377025      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.159

CDS

ATGACTCAATTTAAGGCCCATAAAGCCAAATTAGCAGCTCAGTCCCGCGCACCGCTCGCCGCCGCCGCGAATATCCCAGACTCGCCGATGTCGCCCCCCACCCCCGCGCCCGCGTCGATAGCGTCCTGCGCGGCATCGAGCTCCGGCTCCGACTCCGAGTCGGAGATGGAGTTCGAGTCGGCCGCCAGCCCCGAACCCGGAACCTCCGATGGGTTCCAAACCGTCACGCGCGGGAAAAAACGCGCCCGCGCCGTGGAACCGTCCGCGGCGCCGAAACAACCCAAGGCCGCGAACGCGTCGCGGCCAAAAGTCGTGGTCTCTCCCGACTCCCCTCGCCGCGCAACCCCGTCGCCGCGACCCCAACCCGCGTCCGTCCGCAAAATTCCCGCGCCGCCGCCGGTCATCTTGCGGGAAAAGTCGTCGTGGAACCGGGTATCCCAGGCCCTTACGGCCAACAAAATTAATTACTCCCAAGCGCGTAATCTCGCGCACGGGATACAAATTAAAGTCGCAACGCCGGGCGACCATAGGGCCCTCACTTCTTACCTCCGAAAGGAGAGCATAGGCTACCACACCTATGCACTCCAGGAGGACCGCGAGCTCCGCGTAGTAATACGCGGAGTACCTAAAGAGCTCGACGTCGAGCTAATCAAAGAAGATTTAATTAGGCAAACGTACCCGATTATAAGTGTGCACCGTATGCACAGCGGGCGCGATAAATTCGCATACAACATGGTTCTCGTCGCGCTGGAACCAACCGCCGAAGGCAAACGAATTGCCTCAAGCCTCCGCACCGTTTGCGGCTTATCCGGGGTCACCGTCGAGGCCCCATATAAAAAAGGCACTCCCGGGCAGTGCCACCGCTGTCAGTTATACGGCCACTCCGCGCGCAACTGCCACGCGCGCCCGCGGTGCGTAAAGTGCCTCGGCGACCACGCGACAGCCGACTGTTCGCGGGTCAAAGAGACAGCGACTGAACCACCGAGCTGTGTGCTCTGCCAGAAGCAGGGCCACACAGCCAACTACCGCGGATGCCCCAAGGCCCCGCGGAAGCGTCTGGCCAACGCGCCTCCAAAAACCGTCGGCCCTAAGACTTCGGCGCCCCGCGCGCCGAAACCTGCCTTCGTGCCGGCACCGCGCGATCAAGTATATGAGTTTCTCCGCGATAATCTCATCGACATCCTTCTGGTGCAGGAGACCTTCCTAAAGCCCTCGCGTCGCGACCCCAAAGTCGCGAATTACGTCATGGTTAGGAATGACAGACTCTCCGCCCGCAAGGGCGGGACTGTCATTTACTATAGGAGGGCCCTGCACTGCGTCCCTCTCGATACTCCCTCGCTCTTACATATCGAGGCGTCAGTGTGCCGCATCGCGCTGACGGGACACCAGCCGATCGTCATCGCATCCGTTTATCTCCCCCCTGACAAACCCCTCCTGAGCAGTGACCTCGAGACACTGTTCGGTATGGGGGACGCGGTCATCCTGGCAGGCGATTTAAATTGCCACCACACTAGGTGGAACTGCCATCGCACGAATGTGAACGGTAGGCGTCTCGACGCGTTCATAGACGACCTCACATTCGAAATATTCAACCCCCCGACCCCCACGTACTATCCGTACAACGCCGCGCGTCGTCCGAGCACAATAGATCTGGCACTGCTGAGGAACGTAACTCTGCGCTTACGCTCCATCGAGGCAATGTCAGAACTCGACTCAGACCACCGACCTGTCGTCATGCAGCTCGGTCGCCCACTCAACCGCGAACCAGATACGAGGACCATGGTGGATTGGAAGAAGCTGGGCACGTGCTTAGCTGACACCGCTCCACCAATCCTCCCTTGCGGCCCGGATTCAACTCCATCCCCGAGGATACCACTTTCCCCCGATCTTAGGGACCTCGTTAGAATCAGAAACGCGGCAATCCGGGCCTACGATCGATATCCCACGGATTCAAACCGGACTCGGATGCGTCGCTTACAGCGGGAGGTCAAATCCCGCTTAAGCGACGCCCGAAACGAAAACTGGGATAGTTATTTAGAAGAACTCGCGCCCACTCACCAAGCATACTGGCAACTAGCTAGGACCCTCAAGTCCGAAACTATAGCCACTATGCCGCCTCTCATACGCCCTTCAGGCCAATCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTCAAGGAGGCGATCGATAGCCTACAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGTGCTTAAACTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTTTACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAATAAAATTCTTATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGATAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGGCTCGTGCTCATAATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATTAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCTCTCCCGACTAGGCGCGTCAATAACCCCGCCCCCGCCGTTCGCCCAATCACGATGTACGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGATCGTGCCGCCTTCATCCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCCTTTCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTGCAGTCGGCGTCCATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCTAAACACGTCATCTCGGATCCTCCTGATCCACTAACGGTGCTTTTAGAGTTCCAAGACTTGAATACTATTTAG

Protein

MTQFKAHKAKLAAQSRAPLAAAANIPDSPMSPPTPAPASIASCAASSSGSDSESEMEFESAASPEPGTSDGFQTVTRGKKRARAVEPSAAPKQPKAANASRPKVVVSPDSPRRATPSPRPQPASVRKIPAPPPVILREKSSWNRVSQALTANKINYSQARNLAHGIQIKVATPGDHRALTSYLRKESIGYHTYALQEDRELRVVIRGVPKELDVELIKEDLIRQTYPIISVHRMHSGRDKFAYNMVLVALEPTAEGKRIASSLRTVCGLSGVTVEAPYKKGTPGQCHRCQLYGHSARNCHARPRCVKCLGDHATADCSRVKETATEPPSCVLCQKQGHTANYRGCPKAPRKRLANAPPKTVGPKTSAPRAPKPAFVPAPRDQVYEFLRDNLIDILLVQETFLKPSRRDPKVANYVMVRNDRLSARKGGTVIYYRRALHCVPLDTPSLLHIEASVCRIALTGHQPIVIASVYLPPDKPLLSSDLETLFGMGDAVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIFNPPTPTYYPYNAARRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPLNREPDTRTMVDWKKLGTCLADTAPPILPCGPDSTPSPRIPLSPDLRDLVRIRNAAIRAYDRYPTDSNRTRMRRLQREVKSRLSDARNENWDSYLEELAPTHQAYWQLARTLKSETIATMPPLIRPSGQSPAYDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRVLKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLEFQDLNTI

Uniprot

Q93137   Q9XXW0   Q9BPQ0   O96546   A0A1Y1NA23   K7IN67   + More
J9M522   X1WLB2   V5GNJ2   X1WZH0   J9LC21   V5GNF3   J9LFC9   J9LYS0   A0A023EYS8   A0A087T3W0   A0A2M4CV42   J9M0H4   A0A2M4CV52   A0A2M4BD67   A0A2M4BDV6   A0A2S2QEE0   A0A2J7R7D0   A0A2M4BD66   A0A2M4BDA5   A0A2M4BD62   A0A2S2NGV8   A0A2J7PVX3   A0A2J7QB68   A0A087UGF5   X1WNI2   A0A069DZL8   A0A2H8TF37   A0A0A9YJ00   A0A2S2R9D4   A0A1B6EGD8   A0A2S2P698   A0A1W7R682   A0A2A4IUM2   A0A2S2PHL7  

Pubmed

10333566    10380107    28004739    20075255    25474469    26334808    + More
25401762   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
AF081103    AAC72921.1    GEZM01008457    JAV94772.1    ABLF02024246    ABLF02042518    ABLF02057746    GALX01005299    JAB63167.1    ABLF02034467    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GALX01005359    JAB63107.1    ABLF02023911    ABLF02041861    GBBI01004395    JAC14317.1    KK113281    KFM59799.1    GGFL01005012    MBW69190.1    ABLF02034460    GGFL01004957    MBW69135.1    GGFJ01001858    MBW50999.1    GGFJ01001857    MBW50998.1    GGMS01006359    MBY75562.1    NEVH01006736    PNF36716.1    GGFJ01001844    MBW50985.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1    GGMR01003407    MBY16026.1    NEVH01020940    PNF20481.1    NEVH01016302    PNF25823.1    KK119692    KFM76444.1    ABLF02008153    ABLF02008462    ABLF02008464    GBGD01000415    JAC88474.1    GFXV01000908    MBW12713.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GGMS01017365    MBY86568.1    GEDC01000337    JAS36961.1    GGMR01012305    MBY24924.1    GEHC01000968    JAV46677.1    NWSH01007753    PCG62823.1    GGMR01016296    MBY28915.1   

Proteomes

UP000002358    UP000007819    UP000054359    UP000235965    UP000218220   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   O96546   A0A1Y1NA23   K7IN67   + More
J9M522   X1WLB2   V5GNJ2   X1WZH0   J9LC21   V5GNF3   J9LFC9   J9LYS0   A0A023EYS8   A0A087T3W0   A0A2M4CV42   J9M0H4   A0A2M4CV52   A0A2M4BD67   A0A2M4BDV6   A0A2S2QEE0   A0A2J7R7D0   A0A2M4BD66   A0A2M4BDA5   A0A2M4BD62   A0A2S2NGV8   A0A2J7PVX3   A0A2J7QB68   A0A087UGF5   X1WNI2   A0A069DZL8   A0A2H8TF37   A0A0A9YJ00   A0A2S2R9D4   A0A1B6EGD8   A0A2S2P698   A0A1W7R682   A0A2A4IUM2   A0A2S2PHL7  

PDB

6AR3     E-value=0.00404189,     Score=100

KEGG

105841647    no KO assigned | (RefSeq) uncharacterized LOC105841647

GO

GO:0003964   GO:0004519   GO:0016021   GO:0008270   GO:0003676  

Length:

1269

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.343840000000001

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00011

outside

1  -  1269

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.243574

CSRT

0

Interpretation

Uncertain