Silkworm Genome Informatics Database

Gene

KWMTBOMO14304 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008139

Annotation

PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_L_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(-):1271085-1344335 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.974

CDS

ATGGACTATGGAAGCGGTGGGCCTCCACCTCCGGGGATGATGAAGGAACGACATGGGCCGCCACCGCCACATCATCCTCGTGACGGTCGCGGTTACGGGCCTGAAGGTTACGGTGGCGAGGGTTTCGTTCCGCCACCCCCGATGCATCACCCGTCGATGGCACCACAAAACCAGGGCGGACCACCACAGCAGGGAGCGGTCATGATGGTGTACGGACTTGATCCTCAGACTGCGAACTCGGATAGACTTTTCAATCTGTGCTGCCTGTATGGTAATGTTGTGCGGATAAAATTCTTGAAAACAAAGGAAGGTACAGCCATGGTTCAAATGGGTGATGGTGTCTCGGTGGAACGTTGTGTCCAGAACCTGAACAATGTCACCGTCGGAGATTACACTTTGACTTTGGCTTTTTCAAAACAAGCGTACCTGTCAGAAGTGATGAACCCGTATCCGCTCCCCGACAAGAGTCCTTCGTTCAAAGATTACGTGGGTAACAAGAACAATCGCTTCTTAACGCCGGCCTCTATACACAAGAACAGAATACAACCACCCTCTAAGGTGTTGCATTTCTTCAACACGCCCCCAGACGTGTCTGACGAACAGCTGCTGCAAGTGTTCAAGGACTACGGAGTGACGCCGCCCCATACTATCTCCAAATTTCCGCTCAAAAGTGAGAGATCATCATCAGGACTGATGGAGTTTCAGAACATTTCGCAGTCTGTCATGGCGATCATGGCATGTAATCATGCGACCATACAGCATCCTGGTGCAAAATTCCCGTTCGTCATGAAACTGTGTTTCTCCTCGTCCCGACAAATCGGACAGGGCAAGGGTTTGAAGTCTGATCAGAATCAGAACCAGAACCAGCGGCAAGCCCAGAACAACGGCATGGTCGAGCACGAATACTATTAA

Protein

MDYGSGGPPPPGMMKERHGPPPPHHPRDGRGYGPEGYGGEGFVPPPPMHHPSMAPQNQGGPPQQGAVMMVYGLDPQTANSDRLFNLCCLYGNVVRIKFLKTKEGTAMVQMGDGVSVERCVQNLNNVTVGDYTLTLAFSKQAYLSEVMNPYPLPDKSPSFKDYVGNKNNRFLTPASIHKNRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFSSSRQIGQGKGLKSDQNQNQNQRQAQNNGMVEHEYY

Uniprot

H9JF42 A0A2A4IXQ1 A0A2A4IZ45 A0A2A4J020 A0A2A4IYN5 A0A2A4J058 + More
A0A2A4IZY9 A0A2A4IZA1 A0A2A4IYD0 A0A2H1WDR9 A0A3S2P1G6 A0A212EHG3 V5GJR0 U4U2R0 D6WHW6 A0A1W4XHJ8 A0A1Y1NC20 A0A2J7R996 N6UAA8

Pubmed

19121390 22118469 23537049 18362917 19820115 28004739 + More

EMBL

BABH01026902 NWSH01004703 PCG64747.1 PCG64746.1 PCG64752.1 PCG64749.1 + More
PCG64753.1 PCG64750.1 PCG64748.1 PCG64751.1 ODYU01007977 SOQ51203.1 RSAL01000055 RVE49941.1 AGBW02014889 OWR40933.1 GALX01004132 JAB64334.1 KB631631 ERL84866.1 KQ971321 EFA00047.2 GEZM01007049 JAV95451.1 NEVH01006600 PNF37407.1 APGK01043021 APGK01043022 APGK01043023 KB741011 ENN75552.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000030742 UP000007266 + More
UP000192223 UP000235965 UP000019118

PRIDE

H9JF42

Pfam

PF00076 RRM_1 + More
PF11835 RRM_8

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR021790   PTBP1_RRM
IPR002048   EF_hand_dom
IPR018247   EF_Hand_1_Ca_BS

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JF42 A0A2A4IXQ1 A0A2A4IZ45 A0A2A4J020 A0A2A4IYN5 A0A2A4J058 + More
A0A2A4IZY9 A0A2A4IZA1 A0A2A4IYD0 A0A2H1WDR9 A0A3S2P1G6 A0A212EHG3 V5GJR0 U4U2R0 D6WHW6 A0A1W4XHJ8 A0A1Y1NC20 A0A2J7R996 N6UAA8

PDB

3TO8 E-value=1.60701e-45, Score=459

KEGG

101738381 K13159 heterogeneous nuclear ribonucleoprotein L | (RefSeq) heterogeneous nuclear ribonucleoprotein

GO

GO:0003723 GO:0003676 GO:0005509 GO:0000166 GO:0005634 GO:0008270 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

303

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00714

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00312

outside

1 - 303

Pi

247.345376

Theta

163.715151

Tajima's D

1.937714

CLR

0.226309

CSRT

0.868056597170141

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	IEYFDDPR	100.00	0.034
26280517	DYEIIFGR	100.00	0.034
28467696	DYGVIDEETGIPFR	100.00	0.034

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics