Gene

KWMTBOMO14287

Annotation

PREDICTED:_KRAB-A_domain-containing_protein_2-like_[Amyelois_transitella]

Location

Bomo_Chr24(+):946306-946901      View in EpiBrowser

Full name

SCAN domain-containing protein 3      

Alternative Name

Transposon-derived Buster4 transposase-like protein
Zinc finger BED domain-containing protein 9

Location in the cell

Nuclear   Reliability : 2.212

CDS

ATGCAACAAAAAGAAAAATTTAAAAATCAACTAGAACAGATTGTATCACAAAAAAACAAAAATAATACTTATTTAAACCAACATCAGTATGAAAAAATATTATTGGAAGTAAAGGCAGCAAAATTAAAAGAAAAGAATAAAAGTGATGTAGATTACCGCCGGCTGAAAAGATACGATATAATAGTGGTAGGGAAGGAAGAAAAATTAATAAGTCCATTAAAAGAAGGGGATAGCATAAAATATTTTGCAACAATTGAAGAAACTTATGGTATTATACACGACGCTCATTTGGCAACTGGCCACGGTGGCCGAAACAGATTAGTGAAAGGAATTAATAACAAATACAAAAACATTACTACTGAAGCAGTTATGTTGTATTTATCTTTATGTGAAGCATGTCAAAAAAAGGGCAAGAAAAAAGGAATTGCGATAAAACCAACGACGGCGTGA

Protein

MQQKEKFKNQLEQIVSQKNKNNTYLNQHQYEKILLEVKAAKLKEKNKSDVDYRRLKRYDIIVVGKEEKLISPLKEGDSIKYFATIEETYGIIHDAHLATGHGGRNRLVKGINNKYKNITTEAVMLYLSLCEACQKKGKKKGIAIKPTTA

Keywords

Coiled coil   Complete proteome   Polymorphism   Reference proteome  

Feature

chain  SCAN domain-containing protein 3
sequence variant  In dbSNP:rs409029.

Uniprot

A0A1W4XCP0   X1WZ55   A0A2H8THZ5   A0A2S2QSC1   X1WQB8   J9L052   + More
A0A3Q0IZB7   A0A1W4WZV8   J9LBE2   A0A2S2PX10   A0A2S2Q363   X1XLM9   A0A3Q1MMJ4   A0A0N0BBY6   A0A3Q7PET6   A0A3Q1NLS2   X1WN34   L8HZH5   A0A2K6TXL4   A0A2Y9HMC3   A0A2U3Y021   A0A2Y9ICA4   U3E3V3   X1WZ19   F7IK96   J9JS51   A0A1U7U7U6   A0A2S2PCC0   A0A2K5EF45   A0A2K5RH95   A0A383ZW52   H0WUJ8   F6S057   A0A2Y9EY92   A0A2Y9MA06   A0A341CZE4   A0A340WQF4   A0A2Y9ML13   A0A2U3V218   A0A2K6GZY3   G3QIV7   A0A2R8Y5N3   A0A2R8ZQH4   A0A1U9X8V2   F1S1Q2   H2QSK4   A0A1U9X8W9   Q6R2W3   A0A3Q7SK36   F6UZ16   A0A2Y9RYJ4   A0A2K6C2K0   A0A2K5VS64   A0A2K5ZI32   G7MRB7   G7P3T3   A0A2K6NB06   F6Q028   A0A2K5KSJ7   A0A096NLL7   A0A2J8SK06   A0A2K6LJB0   A0A384DSN8   A0A2U3WQ73   A0A2H8U1E4   M3X5J7   A0A3Q7V0K8   A0A2S2NI71   X1XH17   A0A384BUF4   A0A3Q7Y5Y6   U6DFQ6   A0A2Y9E4M1   A0A0D9R6S7   H2PIB2   A0A140T9Y6   A0A0N0BCV1   A0A2K5HGZ6   A0A1U9X8V6   A0A383YVD8   A0A2S2PDD1   A0A2Y9LFC2   W5Q822   A0A2H8TQZ8   G1QX86   A0A2K6FDF2   A0A2Y9HEN1   A0A2K5TQA9   A0A2I3HYY5   G7PTL1   A0A2R9AC99   A0A2I3TA54   A0A2K6BSF4   G3S2T8   A0A2K5ZXT6  

Pubmed

19393038    22751099    25243066    19892987    22398555    14574404    + More
22722832    16136131    11181995    17974005    15489334    14702039    11572484    23533661    16341006    22002653    25362486    17431167    17975172    20809919   

EMBL

ABLF02043938    GFXV01001083    MBW12888.1    GGMS01011473    MBY80676.1    ABLF02043940    + More
ABLF02062667    ABLF02060792    ABLF02023275    ABLF02023278    GGMS01000766    MBY69969.1    GGMS01002946    MBY72149.1    ABLF02064595    ABLF02065401    KQ435969    KOX67891.1    ABLF02039294    JH882396    ELR49625.1    GAMP01007142    JAB45613.1    ABLF02034726    ABLF02034729    ABLF02034737    ABLF02034738    ABLF02057933    ABLF02060121    ABLF02039568    GGMR01014484    MBY27103.1    AAQR03175422    CABD030043966    AL049543    AL121932    AJFE02104329    AJFE02104330    KY500749    AQY77219.1    AEMK02000052    AACZ04022771    NBAG03000221    PNI76235.1    KY500745    KY500747    KY500748    KY500750    CH471081    AQY77220.1    EAX03170.1    AL713690    BX647791    AY517631    AL671879    BC110834    BC111741    BC111742    AK056369    AB067512    AAEX03017618    AQIA01052405    CM001256    EHH18090.1    CM001279    EHH52847.1    JSUE03030491    AHZZ02024324    NDHI03003564    PNJ21073.1    GFXV01007433    MBW19238.1    AANG04001241    GGMR01004284    MBY16903.1    ABLF02018345    ABLF02018348    ABLF02018350    HAAF01009555    CCP81379.1    AQIB01159636    ABGA01095006    KQ435886    KOX69531.1    KY500746    AQY77216.1    GGMR01014786    MBY27405.1    AMGL01059151    GFXV01004770    MBW16575.1    ADFV01069104    AQIA01026406    ADFV01082790    ADFV01082791    ADFV01082792    CM001291    EHH57710.1    AJFE02061740    AC198461    NBAG03000258    PNI58650.1    CABD030103560   

Proteomes

UP000192223    UP000007819    UP000079169    UP000009136    UP000053105    UP000286641    + More
UP000233220    UP000248481    UP000245341    UP000248482    UP000008225    UP000189704    UP000233020    UP000233040    UP000261681    UP000005225    UP000002281    UP000248484    UP000248483    UP000252040    UP000265300    UP000245320    UP000233160    UP000001519    UP000005640    UP000240080    UP000008227    UP000002277    UP000286640    UP000002254    UP000248480    UP000233120    UP000233100    UP000233140    UP000009130    UP000233200    UP000006718    UP000233060    UP000028761    UP000233180    UP000261680    UP000245340    UP000011712    UP000286642    UP000029965    UP000001595    UP000233080    UP000002356    UP000001073   

PRIDE

Q6R2W3   

Pfam

PF00665   rve        + More
PF05485   THAP
PF13359   DDE_Tnp_4
PF02023   SCAN
PF14291   DUF4371
PF17921   Integrase_H2C2
PF01352   KRAB

Interpro

IPR036397   RNaseH_sf        + More
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR006612   THAP_Znf       
IPR027806   HARBI1_dom       
IPR038441   THAP_Znf_sf       
IPR003309   SCAN_dom       
IPR038269   SCAN_sf       
IPR025398   DUF4371       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR041588   Integrase_H2C2       

SUPFAM

SSF53098   SSF53098        + More
SSF109640   SSF109640       

Gene 3D

3.30.420.10     3.30.40.180     1.10.4020.10    

CDD

cd07936  SCAN
cd07765  KRAB_A-box

ProteinModelPortal

A0A1W4XCP0   X1WZ55   A0A2H8THZ5   A0A2S2QSC1   X1WQB8   J9L052   + More
A0A3Q0IZB7   A0A1W4WZV8   J9LBE2   A0A2S2PX10   A0A2S2Q363   X1XLM9   A0A3Q1MMJ4   A0A0N0BBY6   A0A3Q7PET6   A0A3Q1NLS2   X1WN34   L8HZH5   A0A2K6TXL4   A0A2Y9HMC3   A0A2U3Y021   A0A2Y9ICA4   U3E3V3   X1WZ19   F7IK96   J9JS51   A0A1U7U7U6   A0A2S2PCC0   A0A2K5EF45   A0A2K5RH95   A0A383ZW52   H0WUJ8   F6S057   A0A2Y9EY92   A0A2Y9MA06   A0A341CZE4   A0A340WQF4   A0A2Y9ML13   A0A2U3V218   A0A2K6GZY3   G3QIV7   A0A2R8Y5N3   A0A2R8ZQH4   A0A1U9X8V2   F1S1Q2   H2QSK4   A0A1U9X8W9   Q6R2W3   A0A3Q7SK36   F6UZ16   A0A2Y9RYJ4   A0A2K6C2K0   A0A2K5VS64   A0A2K5ZI32   G7MRB7   G7P3T3   A0A2K6NB06   F6Q028   A0A2K5KSJ7   A0A096NLL7   A0A2J8SK06   A0A2K6LJB0   A0A384DSN8   A0A2U3WQ73   A0A2H8U1E4   M3X5J7   A0A3Q7V0K8   A0A2S2NI71   X1XH17   A0A384BUF4   A0A3Q7Y5Y6   U6DFQ6   A0A2Y9E4M1   A0A0D9R6S7   H2PIB2   A0A140T9Y6   A0A0N0BCV1   A0A2K5HGZ6   A0A1U9X8V6   A0A383YVD8   A0A2S2PDD1   A0A2Y9LFC2   W5Q822   A0A2H8TQZ8   G1QX86   A0A2K6FDF2   A0A2Y9HEN1   A0A2K5TQA9   A0A2I3HYY5   G7PTL1   A0A2R9AC99   A0A2I3TA54   A0A2K6BSF4   G3S2T8   A0A2K5ZXT6  

KEGG

NA   

GO

GO:0003676   GO:0015074   GO:0003677   GO:0005634   GO:0003700   GO:0006355  

Subcellular location

Nucleus  

Length:

149

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00251

Exp number, first 60 AAs:

0

Total prob of N-in:

0.55175

inside

1  -  149

 

 

Pi

438.283363

Theta

243.088841

Tajima's D

2.524768

CLR

0

CSRT

0.946702664866757

Interpretation

Uncertain