Gene

KWMTBOMO14283

Annotation

integrase_core_domain_protein_[Lasius_niger]

Location

Bomo_Chr24(-):802637-804655      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.205

CDS

ATGAACAAAAACCGAAGAGGAAAATTCACAGCCAAAGCGACAGAAGGAGTATTCTTGGGATATGCGGAATATACAAAAGGTTTTAGAATATATATACCCGAAAGGAATGATGTTGTTATCAGCAGAGATGTAAAAGTAGTCGAAAAGATGCATTATAGCGGTACTCCTGCTGAGAAACGCGAAGGTCTTACTCCAGAACCTGAAACAGAACAAATTGAAATTCCAGAAAAAAGAAACAACATTAATGAGAACTTACCTTTTCAGGAACCTAACCCCCTTTATTCCAGCTCTAGTCAAGATCATGTTGATGAACCACCTCCCTCAAGTGGAAGACCACAAAGGGACGTGAGACCACCAGCATGGACCAAAGATTATGAGTTAAGTCGCTGCGTGACCATGTTTACGTCAGAAAATAATGACGACTATGACTGCTCTTTACTAACATACAAAGAAGCTGTGACTGGCACCGACAGACGAAATTGGGAGAAGGCGATACAATCTGAAATGGAATCATTACAGAAAAATAACACCTGGGTATTAGTAGACAAGTCAGAAGCCAAAGGACACAAAATACTGTCGAACAAATGGGTATTTCGGATTAAAGATGACGGTACGTACAAGGCTAGATTAGTCGTACGTGGATGCGAGCAGAAAGGAAACCTGGATTTCGAAGACATTTATAGCCCAGTAGTAAGTCAATCTGGATTAAAAACTTTATTAGCAATTGCCGCATCTAAATCTTACTACTTCATGACATTTGACATCAAGACAGCTTTCTTATACGGAGAGTTATCAGATGAAGTTTATATGAAATTGCCTGTTGGCTATGAGACTAACTGCAATACTACTGAAGTAGTTTGCCGATTAAAAAAATCTTTGTACGGATTAAAACAAGCTCCATTTACATGGAACAAAACTTTTACCCAAGCGATGTTTGATTTGGGATTCAAGACAATCAAAACAGATCGATGCGTTTTCATAAACGAAGATAAGTCAATAATAATCGGACTATTCGTTGATGATGGACTTGTCCTAGGAAAAGATAAGAAAAAGATCGAAGCTATTTTGAAGAAACTTGAAACCAAATTTCAAATGAAAAAGAATGAAAATCCAAGTACTTATCTGGGTATGGAAATAAAAAACTCAAAAGAAGGAATAATTCTTACTCAGAGATCCTACATAAATGACGTACTGGAAAAATACAACATGAAAAATGCCAAACCTTGTGACACGCCCGCAAGTAGCGATTCAAAGTCGATACAGGAAACTGCCCAGGAGAAGGAATATCCCTATAGGGAAGCAGTGGGAAGTTTACTGTACCTGTCTACCAGAACCAGACCAGATATCGCACAAGCGGTCAATCTAGTTAGCAGGAAGGTCGAAAACCCCACTAGAGAGGACGTTACAAAAGTGAAGAAAATATTCAAATATTTAGTGGGAACCAAACATAAAGGCATTTTATTCAAACGAAACAAACCGATAGAGAGCATCGATGCTTACAGCGACTCGGATTATGCTGGAGACCCATTGACGAGAAGAAGCACTTCTGGTTCCGTGCTAATGATAGCCGATGGACCAATATCATGGGCATCCAAGAGGCAGCCTATAGTAGCGCTATCGTCGACTGAAGCCGAGTACATAGCCGCAGCCGACTGTTGCAAAGAGGCATTGTATCTCAAATCTCTATTACAGGAAATAACCGGTTTGGACATAAAAATAAATCTACATGTTGATAACCAAAGTTCGATTCAACTTGTGAAGTCTGGATCCTTCAACAAAAGGTCGAAGCACATAGACGTGCGGTACCATTTTATACATGAACACTTCGTGCATGGATTAATAAATATTAGCTACTGTCCCACAGAAATTCAGTTAGCTGACGTAATGACAAAACCATTGTCAAAAGTAAAATTTGAAAGACACTGTGCAAGATTAATGCATGTATAG

Protein

MNKNRRGKFTAKATEGVFLGYAEYTKGFRIYIPERNDVVISRDVKVVEKMHYSGTPAEKREGLTPEPETEQIEIPEKRNNINENLPFQEPNPLYSSSSQDHVDEPPPSSGRPQRDVRPPAWTKDYELSRCVTMFTSENNDDYDCSLLTYKEAVTGTDRRNWEKAIQSEMESLQKNNTWVLVDKSEAKGHKILSNKWVFRIKDDGTYKARLVVRGCEQKGNLDFEDIYSPVVSQSGLKTLLAIAASKSYYFMTFDIKTAFLYGELSDEVYMKLPVGYETNCNTTEVVCRLKKSLYGLKQAPFTWNKTFTQAMFDLGFKTIKTDRCVFINEDKSIIIGLFVDDGLVLGKDKKKIEAILKKLETKFQMKKNENPSTYLGMEIKNSKEGIILTQRSYINDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKVKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEITGLDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSKVKFERHCARLMHV

Uniprot

A0A0A9YCF4   A0A1B6C2D3   A0A0V0G477   A0A0A9W6J9   A0A0A9WDS7   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A0A9YZ93   A0A146M489   A0A0A9X817   A0A0A9XEU3   A0A0A9YMV4   A0A0A9X3Z4   A0A1Y1LVN7   A0A146LHR9   A0A2S2NXV8   A0A2N9GRB2   X1X8M7   A0A2N9HJ76   A0A2N9ELY1   A0A2N9EIR6   A0A2N9FV67   A0A2N9FQJ1   A0A2N9EK90   A0A2N9H6B2   A0A2N9I6N4   A0A2N9GGS7   A0A2N9FW82   A0A2N9GA80   A0A2N9ETC8   A0A2N9HKJ4   A0A2N9FRN5   A0A0K8TKJ8   A0A2N9GRZ0   A0A2N9H0T6   A0A151R6U8   X1XTZ0   A0A2N9IUP8   B8YLY7   A0A2N9EE21   A0A2N9GBF3   X1WLH4   A0A2N9H4V1   B8YLY3   A0A0J7KE66   H6U1E9   A0A2N9I8Q5   A0A1Y1KNM9   A0A2N9FZ01   H6U1F0   B8YLY4   B8YLY6   B8YLY5   A0A139WJX6   A0A1Y1N3G5   A0A0V0WRK3   A0A151R2G6   A0A151SDY6   A0A0V1HMN9   A0A2N9IGN4   A0A2N9EPH6   A0A2N9I0Q5   A0A151TKT1   A0A085MTW9   A0A2N9ID98   A0A2N9IGN3   A0A2N9I1P0   A0A0V1IW77   A0A151RJN4   A0A2N9FWL6   A0A2N9I9F7   A0A1Y1NM77   A0A0V1NCR1   A0A396GIW2   A0A0V1M1K0   A0A3S3PPW2   A0A0J7K689   A0A1W7R6J6   A0A1W7R6K6   A0A0V0YKY1   A0A2N9H2E5   A0A392LYY6   A0A182H8F8   A0A0V1B5K0   A0A0V1B5A2   A0A151UC72   A0A151UBW1   A0A0V1DTZ3   B1N668   A0A0V0TK25   A0A2N9GCE7   A0A0J7KRG1   A0A2N9HZR4   A0A2N9HZ75   A0A2N9F2B1   A0A2N9J635   A0A2N9FPD9   A0A2N9I7V5  

Pubmed

25401762    26823975    28004739    26369729    22057054    19656907    + More
22427337    18362917    19820115    24929829    30397259    29922311    26483478    18339939   

EMBL

GBHO01016409    JAG27195.1    GEDC01029908    JAS07390.1    GECL01003258    JAP02866.1    + More
GBHO01040573    JAG03031.1    GBHO01040574    JAG03030.1    GBHO01035865    JAG07739.1    GBHO01006096    JAG37508.1    GBHO01035869    GBHO01006095    JAG07735.1    JAG37509.1    GDHC01005053    JAQ13576.1    GBHO01028636    GBHO01028635    JAG14968.1    JAG14969.1    GBHO01024362    JAG19242.1    GBHO01012744    JAG30860.1    GBHO01031779    JAG11825.1    GEZM01048830    JAV76370.1    GDHC01010945    JAQ07684.1    GGMR01009345    MBY21964.1    OIVN01002268    SPD02135.1    ABLF02042027    OIVN01003897    SPD14257.1    OIVN01000183    SPC75833.1    OIVN01000116    SPC74628.1    OIVN01001196    SPC91020.1    OIVN01001052    SPC89229.1    OIVN01000147    SPC75222.1    OIVN01002904    SPD07378.1    OIVN01004879    SPD19723.1    OIVN01001890    SPC98658.1    OIVN01001520    SPC94877.1    OIVN01001666    SPC96375.1    OIVN01000557    SPC82046.1    OIVN01003569    SPD12194.1    OIVN01001091    SPC89740.1    GDAI01002967    JAI14636.1    OIVN01002256    SPD02034.1    OIVN01002680    SPD05612.1    KQ484038    KYP38095.1    ABLF02043571    ABLF02045585    ABLF02057174    ABLF02063637    ABLF02063640    OIVN01006259    SPD29117.1    FJ544857    ACL97387.1    OIVN01000036    SPC73022.1    OIVN01001669    SPC96464.1    ABLF02026843    OIVN01002854    SPD06945.1    FJ544851    ACL97383.1    LBMM01008978    KMQ88491.1    JN402332    AFB73911.1    OIVN01005024    SPD20514.1    GEZM01078128    GEZM01078127    JAV63002.1    OIVN01001309    SPC92453.1    JN402333    AFB73912.1    FJ544853    ACL97384.1    FJ544856    ACL97386.1    FJ544854    ACL97385.1    KQ971338    KYB28117.1    GEZM01013586    JAV92451.1    JYDK01000067    KRX78390.1    KQ484186    KYP36645.1    KQ483417    KYP53032.1    JYDS01000349    KRZ11769.1    OIVN01005657    SPD23465.1    OIVN01000230    SPC76722.1    OIVN01004867    SPD19656.1    CM003607    KYP67664.1    KL367655    KFD60665.1    OIVN01005312    SPD21871.1    OIVN01005591    SPD23209.1    OIVN01004603    SPD18338.1    JYDS01000077    KRZ26987.1    KQ483702    KYP42748.1    OIVN01001534    SPC95017.1    OIVN01005059    SPD20680.1    GEZM01002084    JAV97376.1    JYDM01000512    KRZ81798.1    PSQE01000008    RHN40111.1    JYDO01000312    KRZ65659.1    NCKU01004452    RWS05910.1    LBMM01012772    KMQ86003.1    GEHC01000868    JAV46777.1    GEHC01000867    JAV46778.1    JYDU01000007    KRY00737.1    OIVN01002725    SPD05963.1    LXQA010000742    MCH80155.1    JXUM01118474    KQ566190    KXJ70335.1    JYDH01000102    KRY32233.1    KRY32232.1    CM003603    KYP76811.1    KYP76810.1    JYDR01000237    KRY65040.1    EF094939    EF094940    ABO36622.1    ABO36636.1    JYDJ01000235    KRX39370.1    OIVN01001729    SPC97049.1    LBMM01003976    KMQ92933.1    OIVN01004420    SPD17230.1    OIVN01004379    SPD17029.1    OIVN01000758    SPC85117.1    OIVN01006387    SPD32065.1    OIVN01001022    SPC88819.1    OIVN01004910    SPD19931.1   

Proteomes

UP000007819    UP000075243    UP000036403    UP000007266    UP000054673    UP000054805    + More
UP000054924    UP000265566    UP000054843    UP000285301    UP000054815    UP000069940    UP000249989    UP000054776    UP000054632    UP000055048   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13855   LRR_8
PF03106   WRKY

Interpro

IPR013103   RVT_2        + More
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR039537   Retrotran_Ty1/copia-like       
IPR025724   GAG-pre-integrase_dom       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR032675   LRR_dom_sf       
IPR036576   WRKY_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003657   WRKY_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF118290   SSF118290       

Gene 3D

3.30.420.10     2.20.25.80     3.80.10.10    

ProteinModelPortal

A0A0A9YCF4   A0A1B6C2D3   A0A0V0G477   A0A0A9W6J9   A0A0A9WDS7   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A0A9YZ93   A0A146M489   A0A0A9X817   A0A0A9XEU3   A0A0A9YMV4   A0A0A9X3Z4   A0A1Y1LVN7   A0A146LHR9   A0A2S2NXV8   A0A2N9GRB2   X1X8M7   A0A2N9HJ76   A0A2N9ELY1   A0A2N9EIR6   A0A2N9FV67   A0A2N9FQJ1   A0A2N9EK90   A0A2N9H6B2   A0A2N9I6N4   A0A2N9GGS7   A0A2N9FW82   A0A2N9GA80   A0A2N9ETC8   A0A2N9HKJ4   A0A2N9FRN5   A0A0K8TKJ8   A0A2N9GRZ0   A0A2N9H0T6   A0A151R6U8   X1XTZ0   A0A2N9IUP8   B8YLY7   A0A2N9EE21   A0A2N9GBF3   X1WLH4   A0A2N9H4V1   B8YLY3   A0A0J7KE66   H6U1E9   A0A2N9I8Q5   A0A1Y1KNM9   A0A2N9FZ01   H6U1F0   B8YLY4   B8YLY6   B8YLY5   A0A139WJX6   A0A1Y1N3G5   A0A0V0WRK3   A0A151R2G6   A0A151SDY6   A0A0V1HMN9   A0A2N9IGN4   A0A2N9EPH6   A0A2N9I0Q5   A0A151TKT1   A0A085MTW9   A0A2N9ID98   A0A2N9IGN3   A0A2N9I1P0   A0A0V1IW77   A0A151RJN4   A0A2N9FWL6   A0A2N9I9F7   A0A1Y1NM77   A0A0V1NCR1   A0A396GIW2   A0A0V1M1K0   A0A3S3PPW2   A0A0J7K689   A0A1W7R6J6   A0A1W7R6K6   A0A0V0YKY1   A0A2N9H2E5   A0A392LYY6   A0A182H8F8   A0A0V1B5K0   A0A0V1B5A2   A0A151UC72   A0A151UBW1   A0A0V1DTZ3   B1N668   A0A0V0TK25   A0A2N9GCE7   A0A0J7KRG1   A0A2N9HZR4   A0A2N9HZ75   A0A2N9F2B1   A0A2N9J635   A0A2N9FPD9   A0A2N9I7V5  

KEGG

101736913    no KO assigned | (RefSeq) uncharacterized LOC101736913

GO

GO:0003676   GO:0015074   GO:0000943   GO:0008270   GO:0003700   GO:0043565   GO:0003964  

PANTHER

PTHR11439  

Subcellular location

Nucleus  

Length:

648

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0520800000000001

Exp number, first 60 AAs:

0.02095

Total prob of N-in:

0.00589

outside

1  -  648

 

 

Pi

131.093248

Theta

118.734367

Tajima's D

0.305373

CLR

604.1014

CSRT

0.454327283635818

Interpretation

Uncertain