SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14281
Pre Gene Modal
BGIBMGA008152
Annotation
PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like_[Bombyx_mori]
Location
Bomo_Chr24(-):652619-702405      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.06
 

Sequence

CDS
ATGGCGTTGAAACTGAAATACAAGGACGAGCACGGCGTTGTACAGATCAACATGAGTCCATTGGCCAGTCCCCGCGCGGACGACATCGCCGATCCCAAATTCGACACTATAAACAACAGATTCGGACAATACGACCTCTTCGGGGGGAAATACGACAGTGGAGGGGAGCAACCGTCGCTGTTCCGAAGCCGCTACAACAGTATCGAAGAAGAACTGGCCAACACGCCGTACGCCTTCGCCACGGAACGATCGCTCAGACTAAACACATCCGAGAATCTCGATATAACGATAAAATCGATAAATTCCCCCACGAACGATATAGAAGACGATCGATTCTTTCGTTGCAACGATTACGATTTGTTCGGGCCCCAAATCGATTTGAAAGACGAAGCTTTCACCGTGACCCAGCTGATCCACGCTCAGGATCGATATTTCGATCTGTCTTCTAGGACGTCTGATAGTTCTAAGGGTGTCAGTGCAGTGTCCAGGGATGAAGGGGCGTTTAAAGTACTGCCTACGAGGGTGAAGACATCACCGGCGTATACACCTGTTCCAGTCGTGTCAACAGCGAAGAGAAAGACAGAGAAGTCATTCGCGATATTAGCTGACCCTCCCGCCGCCTCCCGTCCAAGCAGTCCTCGCTCTCTTCCCGTGGAGATTAAGCCGGGAAGAGTTTCCCCGTTTCGTGGTCGAGGCTTTAGAGAAGAAACTTCAAGACACAGCACTCCGAAAACCTCCGCAACCAACTCCAGAGCTAGTTCTCCACCCAGAAGAAGAACGAACTCCTTGCCAAGAATAGACAAGATGGCAACTGTCACTCTTCCCCCACCAATCCATATAACTCACTCCCCCAGAAATTTTCTGAAAGAAAACATAGAAGAAGTAAGGGAACTGAGTGAGTTGAATAGAGAAAAACATGAAGCGGAAGCAGAAAAAATGAGACAAGAAGAAGAAGAGGCTCTACTTAAGGAAATGGGCATTTTAGATAAGAAAATTCGGTCTAGATCTACTTCCAGAACTAATTCACCAAGTAGATTAAAGCTTAGATCTAGATCGAATTCTCCGGCGGCGATATTGCATATCCAAAATGTTCCTTCGAGTAATAAAACTATTGTGAACGTTGAAAATGTAGTGCCTAAACCTAACACTCACAGATCTAGGGTTCGGACAGTTTCGAAATCACAACCGCAATCAAATGACGGTTCTCCTAAGAATTCCAAAATACCTAAAAGACAGAGTTCTGTGTCTCCTACTAGAACAACCAAACGCGATATGTCTAACGGCAGAAGATTTATTGGGAATGGCCTAAATCAAAATCAACGATTCATTTCAAACAGCACAAGCAGCATCCACGAGACAATAAGAGTAGGCAGTCAGGTTCACGACAAAAGAGGCATGAGTAAGAGTACTCAGAATTTAGACATATCTCCTGCTCACATTAGAGGAAAACCTCCGATTTCACCAGGCAAAGGCGGACCTCCTCCTTCAAATAAGACTATTAACGCCAAACGGCTTTCCCCTATTGTTGGCACACCAAACAAAAGCCCAACAGAAGACCCGAAGCCAAGTTCGGCTAGGACTCCAACAAAACCATCCACAGTACCAAGGAAAGCGACCAAAACAGCTGATAATACACCTGTTTCGTCTAGATTGAATTCTAGACAGCCTAGCAGATCAGTCAGTAGGGATCCAAGTCCTGAAAAACGTACAAAAACCACAGTTAAACCTCCTCCTGCAAAAACTGTAAATCGAACATCAAGCAACAAAACTGTTTCAAAAACTACCGTTTCCAAGCCTGAACCAAAAAAGCCTATAAGCAGAACTAGTAGTATTAAAAGCCTCACTAGAACTCCCAGCAGTAAAACACTAAACGAAAAACCGCCACTGAAAAAGACTAATAGTAAAAAGGATTTAACAGAAAAATCGCAACCGAATGGCAAAGTAAACGAAGTTGGAATAAAAAAGGATTCACTAAAAGAAAAGAGTAAGCCACAAAAAAGTTCGAGCTCTGAGAAGGACGATTCAAAACTACCAGAAACAGTTACAGAAGCTAAAAACCAAACAGCTTCGACCGAAACTGAAACTGAAGAGATTAAAAAGCAAGATAACGAAACTCAATACGACAGAATCACTAACGACAAAGGCGAGCTAGTTGTTATGACTAAGAAAAATATAGTGTCAATGACAACTGCCGCGATTACATCACAACCACTAGAGGTAGTTACGAAAGTTACAAATCAGTTACCTGTTGTACTGGAAAAAGCTAGAGAAAAGGCTATGCTTGAGAGACTGAGCTCTAAAGAATCTTTACTAGGAAAGGAAGATGAAAAAGACAAAGAGAAAATCAAGGATACGAAAGAAAAAGACAAAATCGAAGATAATAGACCCCCGAAACCAGCTAGAAGTCACGACAGGACTATATTCGTGGAAGACAATGTTAAATTGAAACCATTGCAGCCTCCATACAATAATCCGCAAGTCGAGAGGGTAAAGCAGAAAATTGATGACATTCTAAAAGAACCCGAAATTTCTACAGAAAACATTTTAACCGCTTCAGCCAAGTCTCGCGAAGCTAAAAGTACGTTTAAAACTTTCGCCACGAAAACTGCGGCGGACGTTAAAGAAGCTAAAGATGAGGTTTCAAATAAACTGACGAACATAAAAGATCAAGTCGTTAAGCAAAACGACAAAATGGTGACTGAAATCCGGTCCGAAGCCACAAAAATAGTCGACAGCATCATAACACCAGTTGAAGAGCCGAAAGAAGTTCCCGAAAAACCAAAACCTGAACCGAAAAAAGAAGTAGAGCCCGTAGTTATGGTGGTGACTGAAAAGAAAAATATAGAGAAAGAAAGCGCAGAGAAAGTTAATGTAGCTATAGTGAAAGGTGGGGCAGATATAGAAGTGCAAAGTTCTAATGTACCGGCGCCGGATGTAAGCAAAATTATCTTCGATAACAATACGACGGACGAGTCGGACAAATCAACACAAAGCAATGGAGGATTTCCTCAAAGCGTTAGCACAACGCCCATACCACCGGCCAGAACTCGAAGAGAATCGAAAAAACAAGAAACGAACCTCGAACCCGCAATACCAAGCGACGAACATCCAAAACCGCCGAACTTATGCGAAAGAATCATGGGGAAATGCAAATCTAAATGTTGCCCGTGCTGCGTCAAAGGACCGAAAGAAAATGACGATAAAATACAAGAAGAAAGTCTAACGCGAGAAAATTTAGAGGCGTCGAAAGACAATGAGAGCGTAATGAAAGAGGACCGGCAGAAAGAAATATCCGAAACTTTGCATGGAAAGAAAATGGGGCTGATGGAAAAACTTAACTGTTGCAAAAAAAAAGAAAAAGAAGAGATGATAAGAGACGTTGAAACGGCAACAGGAAAGGCCTCAGTCGAATTCGAGGACGAAGTGAAACGCAAAAGGAAATTCCGCGACATAATCTGTTGCGGTCGCAATCAGCGTGTCAGCGACATGTCACCGAGAAACATTGCCATGTCAACGGCAAATGTTGCCATGTCGCCGGCCAACGCTGCCTTGACTCCCGCCGTTGCCGACGACACTGGATGCTGTGGGAGAAGAAAAAGCCAAGTGGACAGAAGAGACAGTATATTGAGTGATAGGACACATACGAGCTGCTGCAACAACCGCTTCGGCTCGTGGCTCCGCGGCGTGTGCCGTCGACAGTCCGAGCACTCCTCCAGTAGAAGGACGAGCGAGTTCTCTAAGAACAAAAGTCTCTCACCAACTTTACCACCCGAGGATACCCGGAAGAAACTCGACACTTCTTTGGTTGAGCACACGAGTGTGATGCGTGGAGCTATCCCGATACTGCCGATAGCTCTAGCATACTTCTGTTTGCTGTTCAACATAATCGTTCCCGGCCTTGGGACGATCTGTAGCGGATTGTTCTGTCTCTGCTTCGGCATACCGAGGTTTGGAGTCCACGACGGAGCCAGACACAGAATAGGGTCATTCGTGATCAACCTGCTCGTTGGTTGTGGTCAACTGTTCACGGTTCTCTTCTGCCTGGTCGGTTGGGGCTGGTCTATATGGTGGGGTGTCATTATGCTGAAGATATCACGGAAATACCGCAAATTAAGAGCTGAGGCAGCAGCACAAGAGGCCGAAGCTCCTCCCATCACAGCCAACAATCACACGCGACCGTAA
Protein
MALKLKYKDEHGVVQINMSPLASPRADDIADPKFDTINNRFGQYDLFGGKYDSGGEQPSLFRSRYNSIEEELANTPYAFATERSLRLNTSENLDITIKSINSPTNDIEDDRFFRCNDYDLFGPQIDLKDEAFTVTQLIHAQDRYFDLSSRTSDSSKGVSAVSRDEGAFKVLPTRVKTSPAYTPVPVVSTAKRKTEKSFAILADPPAASRPSSPRSLPVEIKPGRVSPFRGRGFREETSRHSTPKTSATNSRASSPPRRRTNSLPRIDKMATVTLPPPIHITHSPRNFLKENIEEVRELSELNREKHEAEAEKMRQEEEEALLKEMGILDKKIRSRSTSRTNSPSRLKLRSRSNSPAAILHIQNVPSSNKTIVNVENVVPKPNTHRSRVRTVSKSQPQSNDGSPKNSKIPKRQSSVSPTRTTKRDMSNGRRFIGNGLNQNQRFISNSTSSIHETIRVGSQVHDKRGMSKSTQNLDISPAHIRGKPPISPGKGGPPPSNKTINAKRLSPIVGTPNKSPTEDPKPSSARTPTKPSTVPRKATKTADNTPVSSRLNSRQPSRSVSRDPSPEKRTKTTVKPPPAKTVNRTSSNKTVSKTTVSKPEPKKPISRTSSIKSLTRTPSSKTLNEKPPLKKTNSKKDLTEKSQPNGKVNEVGIKKDSLKEKSKPQKSSSSEKDDSKLPETVTEAKNQTASTETETEEIKKQDNETQYDRITNDKGELVVMTKKNIVSMTTAAITSQPLEVVTKVTNQLPVVLEKAREKAMLERLSSKESLLGKEDEKDKEKIKDTKEKDKIEDNRPPKPARSHDRTIFVEDNVKLKPLQPPYNNPQVERVKQKIDDILKEPEISTENILTASAKSREAKSTFKTFATKTAADVKEAKDEVSNKLTNIKDQVVKQNDKMVTEIRSEATKIVDSIITPVEEPKEVPEKPKPEPKKEVEPVVMVVTEKKNIEKESAEKVNVAIVKGGADIEVQSSNVPAPDVSKIIFDNNTTDESDKSTQSNGGFPQSVSTTPIPPARTRRESKKQETNLEPAIPSDEHPKPPNLCERIMGKCKSKCCPCCVKGPKENDDKIQEESLTRENLEASKDNESVMKEDRQKEISETLHGKKMGLMEKLNCCKKKEKEEMIRDVETATGKASVEFEDEVKRKRKFRDIICCGRNQRVSDMSPRNIAMSTANVAMSPANAALTPAVADDTGCCGRRKSQVDRRDSILSDRTHTSCCNNRFGSWLRGVCRRQSEHSSSRRTSEFSKNKSLSPTLPPEDTRKKLDTSLVEHTSVMRGAIPILPIALAYFCLLFNIIVPGLGTICSGLFCLCFGIPRFGVHDGARHRIGSFVINLLVGCGQLFTVLFCLVGWGWSIWWGVIMLKISRKYRKLRAEAAAQEAEAPPITANNHTRP

Summary

Uniprot
A0A2H1WKY6   A0A2W1B151   A0A2A4K907   A0A194QCQ9   A0A212ENN2  
Pubmed
28756777    26354079    22118469   
EMBL
ODYU01009019    SOQ53114.1    KZ150477    PZC70739.1    NWSH01000055    PCG80142.1    + More
KQ459386    KPJ01226.1    AGBW02013627    OWR43094.1   
Proteomes
UP000218220    UP000053268    UP000007151   
Pfam
PF15795   Spec3
Interpro
IPR026673   SPEC3/Stum       
ProteinModelPortal
A0A2H1WKY6   A0A2W1B151   A0A2A4K907   A0A194QCQ9   A0A212ENN2  

Ontologies

KEGG
101744067    no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like
GO
GO:0016021  
PANTHER
PTHR21676  

Topology

Length:
1393
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
57.89866
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1291
TMhelix
1292  -  1314
inside
1315  -  1334
TMhelix
1335  -  1357
outside
1358  -  1393
 
 

Population Genetic Test Statistics

Pi
246.244669
Theta
179.400452
Tajima's D
1.386712
CLR
0.155288
CSRT
0.76301184940753
Interpretation
Uncertain
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