SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14275
Annotation
kda_protein_in_nof-fb_transposable_element_[Lasius_niger]
Location
Bomo_Chr24(+):528403-531980      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.679
 

Sequence

CDS
ATGAAACATGACAAACCATTTATTTATAAAGGTCGCAAGTACTACGGTTTTGAACCTGGTGTGTGGACAAATATTGTTTCATTCGCTTTTTGGGAACAATACCGTCTCAAATGTGCTTTTGTATTTAAACGTGCTAAAATTAATGGAAGTAATAATTATGCAGTCATGAATGGACGATGTATAGATCGCTCTTGTCTTAATTCTGTTTGTGGAATTATTAAAGATCGTCCTTTAGATGACGGGCCTGTTGTTATTACCATGAGGTGTAGGGACACACGTTATTCTAAGCATGCTGATGTGAAACGTCCTCTTAATGGTAAAAAACGTAAAGAAGTTCAGCAAAAATTACTACATTCTGGTATTCTAGGTTGGAGGAAGGAAGAAGCTAAAACAATTTTAAAACCTGGAGATACTGGATCACCTTTTTTATACAACTTAAGCACACTTCACCAAGCTAAAAAAGAAGCGAAAGATGAAGAACTTGGAATTCATTCTGATGATCGAAGAGATGTAATATTAGCTATACGCAAGATGAATCAGGATCCATCGTATGTTAATTCTATTTCATGGATTAGTGATACACCATTTTTTGTCTTCTACGCAACTCCAACACAATTTCACACTTACGCAGAATATTTGCGAATTCACAAACAACACTCATCAATAGTTATTGATGCAACAGGTGGATTAGTTAAAAAACTGTCAGATTCTCGAGATAAAAAAACTGGTCATATATTCCTGTATCAAATTGTTATTAATTTTGACCATACTACGATTCCGGTATATCAAATGCTATCAGAAAAGCATAGTGCAAGGTTTATTGCCTTTTGGCTTTCTGAATGGACAGAAAAAGTTAATTTACCACAGCAAGCAGTCTCTGATGGATCTCGAGCTCTTTTAAATGCAATGTCTATTGCATTTAATGGTAAATCTTTAAAAGATTATATTAATTTTATGTTTGAAAGTGTAACTACCCGTGCTAATTTACAACCACGTACTTTCATTAGATTGGATACAGCACACTTTCTTCATGCAGTCAGCAGTTGGAAATGTTTTCAAACTGCCCTGCATAAAATCGTGAAATCTTTTTTTCTATACTGTGTGGCATTGATGATTGATTGTGAAGAACTATCTAAATTGGAGGAAATTTTTATGATGATATTAATAGTGTGTAGCTCAGAGTTTGAAGATACAATCATTGCTATGGGTGACCGGATGATAACTCCAGGTGAAGCTAGAAAATATTTAGAAGAATTAGTGGCAAGACGGAATCTTGATCTTGCTGTTATCGATTCTGTTGAAGTTGATCCTGATAAAACTGTAATTTTTGAAGAATTTGATGAAAAAGGGTGGTCAGTAGCTCTTGTAACGTGGATTGAAAATCTTTGTAAAAAAGTTAATACTACAATTTTTACTGGTAAAAAGCTTAACACTCATTATGTCCCAGGCCTGTATGCCGATCTCGTCAATAAGATGAAAGATTTTCCACTTTGGACAAATGTATGCACACCTAAGACTATGTCACGGCCGACTTCTTGTTACATTGAAACAGACTTCAAAGACCTGAAAATGAATTTGAGGAAAAAAGTAAAATTACCTACGACGGTAAACAAGTTTTTAAAATTACATATTAATGACATTTTAGGTGGAGTTAATATATTCCGATCGAAACTAACCAAATTTATAGTCGATAATTCTTCCAACGAGTATCAAAAGAAACCAAAAGAAGAGAATGAGTATGAAAACTGGAAAGGATTAGGTAAAAATGAAACTGCGACAGATTATGATTGGGCAACGGATTATGGAAATGTGTCGGATCAGCTTGAACATAATGATTCAGCTACCGTGTCGGAGAATCCTATTGACTTGGTGAAAGAAACAAATCTAGCAGAGAAGAATATTGATCAAAATTACTCTGTAACTACATTCAACATTGGTGATGATCATAATTATAGCTCTATAAGTATTGAAGTAAAACATGAGGATTCAAATATAAACACTAGCGTTATTAATAAAGAAATCAACAGTTCTGATGAAGAACTATCATCTATACATAAAAATAATCAAAATGATTCTAGTTACAACCAAAATTTTGATGAAGACGAAAATTATTGCCTCGATATTAGTATCACTAGTGTAGAAAATCACGAAACTATTGATGTTGGATTATTAAATACTGACCTTCAAATTGTTACTTCTACTGATTCTCTAGATGATAGTATTTCAAATTTATCCTCATCAACAGTATATCTCGATAAGGAGAAAAAAAATATTCATGAATTTTTGACAGTAAAACAAGATAGTGAACCTTTATCTTTGGCATTAGAAAACATGATGAAACAAAAAATGGTGAAGAAAAAAAACGGTCATTACTTCCAACAATGTCCAGAATTTGCTCTATTAAATAATTTAGTAGATGATGAAAAATCTAAAGTTATCAAAAAAAGAAAAGATTTTTTACTTCGCAATGTGAGCTTTATTTATTTAAATTTGCAACTGGAAAGTAGTGAGGAATCTAAAACTAATTTACGTTATAGAATATCAGGCGTTGTGGCGTTTATCACGGGTCATTACTTGGCTTATTGCAGACGATTAGGAGGTAATTGGCAGGTATACAACGATCTGTCAATAAAACCGGAATCTGTACCTGAACATGCCGAAGTTGAAGTGCACGCAGTGTTCTATACATTAGAATAA
Protein
MKHDKPFIYKGRKYYGFEPGVWTNIVSFAFWEQYRLKCAFVFKRAKINGSNNYAVMNGRCIDRSCLNSVCGIIKDRPLDDGPVVITMRCRDTRYSKHADVKRPLNGKKRKEVQQKLLHSGILGWRKEEAKTILKPGDTGSPFLYNLSTLHQAKKEAKDEELGIHSDDRRDVILAIRKMNQDPSYVNSISWISDTPFFVFYATPTQFHTYAEYLRIHKQHSSIVIDATGGLVKKLSDSRDKKTGHIFLYQIVINFDHTTIPVYQMLSEKHSARFIAFWLSEWTEKVNLPQQAVSDGSRALLNAMSIAFNGKSLKDYINFMFESVTTRANLQPRTFIRLDTAHFLHAVSSWKCFQTALHKIVKSFFLYCVALMIDCEELSKLEEIFMMILIVCSSEFEDTIIAMGDRMITPGEARKYLEELVARRNLDLAVIDSVEVDPDKTVIFEEFDEKGWSVALVTWIENLCKKVNTTIFTGKKLNTHYVPGLYADLVNKMKDFPLWTNVCTPKTMSRPTSCYIETDFKDLKMNLRKKVKLPTTVNKFLKLHINDILGGVNIFRSKLTKFIVDNSSNEYQKKPKEENEYENWKGLGKNETATDYDWATDYGNVSDQLEHNDSATVSENPIDLVKETNLAEKNIDQNYSVTTFNIGDDHNYSSISIEVKHEDSNINTSVINKEINSSDEELSSIHKNNQNDSSYNQNFDEDENYCLDISITSVENHETIDVGLLNTDLQIVTSTDSLDDSISNLSSSTVYLDKEKKNIHEFLTVKQDSEPLSLALENMMKQKMVKKKNGHYFQQCPEFALLNNLVDDEKSKVIKKRKDFLLRNVSFIYLNLQLESSEESKTNLRYRISGVVAFITGHYLAYCRRLGGNWQVYNDLSIKPESVPEHAEVEVHAVFYTLE

Summary

Uniprot
A0A0C9PUU9   A0A0C9PYU4   A0A0C9QSH7   J9K5M3   J9JLX2   J9LES7   + More
E2B094   J9MAM8   V5G2B8   X1X644   J9K5D0   X1X685   A0A2W1BE78  
Pubmed
20798317    28756777   
EMBL
GBYB01005188    JAG74955.1    GBYB01006688    JAG76455.1    GBYB01006689    JAG76456.1    + More
ABLF02012895    ABLF02005761    ABLF02005588    ABLF02013254    ABLF02065820    GL444449    EFN60896.1    ABLF02010110    ABLF02060895    GALX01004306    JAB64160.1    ABLF02014640    ABLF02012432    ABLF02010911    ABLF02041432    KZ150226    PZC72044.1   
Proteomes
UP000007819    UP000000311   
Pfam
PF12762   DDE_Tnp_IS1595
Interpro
IPR038765   Papain-like_cys_pep_sf        + More
IPR028889   USP_dom       
IPR024445   Tnp_ISXO2-like       
SUPFAM
SSF54001   SSF54001       
ProteinModelPortal
A0A0C9PUU9   A0A0C9PYU4   A0A0C9QSH7   J9K5M3   J9JLX2   J9LES7   + More
E2B094   J9MAM8   V5G2B8   X1X644   J9K5D0   X1X685   A0A2W1BE78  

Ontologies

KEGG
101741636    no KO assigned | (RefSeq) uncharacterized LOC101741636
GO
GO:0016021  

Topology

Length:
898
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.21333000000001
Exp number, first 60 AAs:
0.80495
Total prob of N-in:
0.04923
outside
1  -  898
 
 

Population Genetic Test Statistics

Pi
311.123711
Theta
203.019037
Tajima's D
1.813576
CLR
0.016609
CSRT
0.850657467126644
Interpretation
Uncertain
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