Silkworm Genome Informatics Database

Gene

KWMTBOMO14272

Pre Gene Modal

BGIBMGA008155

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_rho_guanine_nucleotide_exchange_factor_11_[Bombyx_mori]

Location

Bomo_Chr24(-):458234-509792 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.081

CDS

ATGCTGGGCGGGGCGGTGTCGCCGGGCGGCGACGACCTCCTCACCGTCACCGTGGTCCGCGACGAGCATGGATATGGAATGAAGGTTTCAGGTGACAATCCGGTGTTCGTGCAATCAGTGAAGGAGCACGGCGCAGCGTGGCGGGCCGGCCTGCGGGCTGGAGACCGGATCCTGAGGGTCGACTCTATACCAGTACATCATCACACTCACCAGCAAGTTGTCCATATGATACGAGCGAACCCGACGACCGTGCTCACCGTGCAGCAGAACACTTCAAGACACAAAACTCCCATCACAGCGCCGGTGCCCGTCAACTCGGAGAAGCAGCGTCAGCTGGAAGTCTCTAAGGTCCACACGATGAGGTTGATGCTGGAGCAAGAACAGAAGTACATCAGAGACCTTCGTAATGAACTATCAAAAGTCCCCGACGTGCGAAAACAAGCTCAGCTAGAAGCTGCCGAGCTGCGTTGCTCCAAGCTGCAGCACGAGATCGACAGCATCATGGCCGGACAGCCCGAGCCGACCTCACCCGCGCCGTCCACGCCGCGCCTTAACACTCGCACCCGGAGCAGCCTCGACAAGAGCCCCCTCTCGCACAACACGGGCTTCCTCAGCGGCCTTCCGCGCTCCCTGAGCAACCTCACCGGACAATCCTTGAGGAACCTTCGGCAGGCGCGCCAGAGCAACAAGAACCAGCAAGAGAACCAACCTCCGCTCGTGCGACAGAATTCGGACGATGACACCAAGCGACGTCACGCGCACAACAACACTGTGCCTCTGGTGCCGACCACTTGTCTGGATAACGTGACCCCTCCCCCTCTGCCTCCGCGATCGATCGAGAGACCAAAGAGGAGCCCGTTGAGCCCACCGACCACGCCGGTCAATCCCCTAGCCAAACCTAAGCCGTGCTCTACGAGCTTTGCACAGAAGAACAACACGGGGAGGTATTATCCCGAGAGGCCTCAGTTTCCGATGCACCAGTCCATGCCGGGCTACAAGGACGACCACTCGAGGCAGTTCCGGAGGTCGTCTCACTCTCTGGACGGGGAGCTCGAGGGTCCTCAGCCCAATTCGATCGCGTTGCAGATGAGTTACCCGTTGGTGAATTTACCACCTCCGCCGCTGCAGACGGACAACAGGAGTGGCGTGCCGGTGCTGCACACCAGGAGCAGGTCCTCGCCGGAGCAGCTGGATTGCGAGTTGACCAGGTGTAAGTATCTACAGTATGCGCGCGAGTTCATGTCCATCGGGGCCAGAGGCGACGCGCGGGGGGCAGCCCGCCCTGCCTCCGCCCGCCTCCCCGCGTTTGTCTGA

Protein

MLGGAVSPGGDDLLTVTVVRDEHGYGMKVSGDNPVFVQSVKEHGAAWRAGLRAGDRILRVDSIPVHHHTHQQVVHMIRANPTTVLTVQQNTSRHKTPITAPVPVNSEKQRQLEVSKVHTMRLMLEQEQKYIRDLRNELSKVPDVRKQAQLEAAELRCSKLQHEIDSIMAGQPEPTSPAPSTPRLNTRTRSSLDKSPLSHNTGFLSGLPRSLSNLTGQSLRNLRQARQSNKNQQENQPPLVRQNSDDDTKRRHAHNNTVPLVPTTCLDNVTPPPLPPRSIERPKRSPLSPPTTPVNPLAKPKPCSTSFAQKNNTGRYYPERPQFPMHQSMPGYKDDHSRQFRRSSHSLDGELEGPQPNSIALQMSYPLVNLPPPPLQTDNRSGVPVLHTRSRSSPEQLDCELTRCKYLQYAREFMSIGARGDARGAARPASARLPAFV

Uniprot

H9JF58 E3UKN4 A0A2A4IZX8 A0A2W1BF59 A0A194Q6R9 A0A2H1X206 + More

Pubmed

19121390 28756777 26354079

EMBL

BABH01026813 BABH01026814 HM449908 ADO33043.1 NWSH01004191 PCG65375.1 + More
KZ150322 PZC71410.1 KQ459386 KPJ01233.1 ODYU01012398 SOQ58684.1

Proteomes

UP000005204 UP000218220 UP000053268

PRIDE

H9JF58

Pfam

PF09128   RGS-like        + More
PF00130   C1_1
PF17820   PDZ_6

Interpro

IPR002219   PE/DAG-bd        + More
IPR015212   RGS-like_dom
IPR041489   PDZ_6
IPR036305   RGS_sf
IPR036034   PDZ_sf
IPR001478   PDZ

SUPFAM

SSF50156 SSF50156 + More
SSF48097 SSF48097

CDD

cd00029 C1

ProteinModelPortal

H9JF58 E3UKN4 A0A2A4IZX8 A0A2W1BF59 A0A194Q6R9 A0A2H1X206 + More

PDB

2OS6 E-value=2.63352e-12, Score=175

KEGG

101742925 K07532 Rho guanine nucleotide exchange factor 12 | (RefSeq) rho guanine nucleotide exchange factor 1

GO

GO:0005737 GO:0046872 GO:0035556 GO:0005089 GO:0005515 GO:0031461 GO:0016791 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

437

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00045

outside

1 - 437

Pi

253.890054

Theta

175.597828

Tajima's D

1.390443

CLR

0.271099

CSRT

0.766511674416279

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics