Gene

KWMTBOMO14271

Pre Gene Modal

BGIBMGA008155

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_rho_guanine_nucleotide_exchange_factor_11_[Bombyx_mori]

Location

Bomo_Chr24(-):449703-457145      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.813

CDS

ATGGAGGAGGATGACTCCCCCGCCTCGGACACGTCCACATACTCCGGGCTGTTCTCGAACCTGCGGTCGGTGCGCGAGTCCAAGGCCAGGACCGCGGTGCTGCTAAACTGGCTACTGGGAGAAAGGAGATGCGCGTGCGCCAGTCTGCTGCTGATCCTCACGGACGCGTACCGGTCGGCGAGTGGCGTGACGGCGGCCACGCTGCGCCGCTGGGCCTACGAGATACACTCCACGTTCCTCATGCCCAACGCGGTTCTACAGCTGAATGGCGTCGACGAAAACATGGCGAATGAAATCGAACATATCCTAGTTAACGAGCACGACAAGGAGGAGCTGGTCCGCAACGTGTTCCGCAAGGCGCGGCAGAAGGCGAAGGAGGAGCTGAGCTCGCAGCTGTCGGAGTTCCAGGTGAAGCGGCAGGTGGGGCTCGGCACGCTGTACGGCCCGCACGACGCGCTGCTGGAGCGCTGCGACCTGGACAAGGCGCAGGAGCTGGTGGTGGTGGAGCAGGTGATGACGTCACAGTTGCGCGCGGTGAGCGCCGCGTCCCCCGCGCCCGCCGCCCCCGCCCCCTCGCCCGCCGCCGCGCAGGACGCGCACAACACGCTGCTGGCCGCGCTCATCGCCGCCGCGCTCGCGCTGCACTGCCGGCCCGCGTCCGTGGCCGCCGCCGTGGGGGGCGCCCGCGCCTCCTTCCTGCAGAGGGACAAGCTGTACAAGCAGAGGGTCAAGCAGATCATGAAGCAGCATCCCCAGCCGTTCGTGGTGAGGGGCCACCACCTGCAGCTGCAGGCGCTGACGTCGGTGGGGCACTGCCACCGCTGCGACCACGTCATCTGGGGCCTGGCGCCGCAAGCCTACGTGTGTGCCGATTGCAAGCTGCGGGTCCACCGCGCCTGCGCCAAGTCCGTGGAGGAGGGCTGCTGCCTCGACGGGGAGCACCACACCAACAGGATATCACGGTTCATGGAGCGGATGCATCCCAACAATCAACCCAACGCTCAAGACGTGAACGACAAGAAATCAAGAAAGGCTTCGGGCACGGCGCATTTCCTCAACATGGAGCGCAGTTTCCGCAAGGCTGAAGACGAGGCACCCTGGGACGCGATCCTCGCACCAGCTCAAGGATAA

Protein

MEEDDSPASDTSTYSGLFSNLRSVRESKARTAVLLNWLLGERRCACASLLLILTDAYRSASGVTAATLRRWAYEIHSTFLMPNAVLQLNGVDENMANEIEHILVNEHDKEELVRNVFRKARQKAKEELSSQLSEFQVKRQVGLGTLYGPHDALLERCDLDKAQELVVVEQVMTSQLRAVSAASPAPAAPAPSPAAAQDAHNTLLAALIAAALALHCRPASVAAAVGGARASFLQRDKLYKQRVKQIMKQHPQPFVVRGHHLQLQALTSVGHCHRCDHVIWGLAPQAYVCADCKLRVHRACAKSVEEGCCLDGEHHTNRISRFMERMHPNNQPNAQDVNDKKSRKASGTAHFLNMERSFRKAEDEAPWDAILAPAQG

Uniprot

H9JF58   A0A1B6JC30   A0A1B6DCQ4   A0A1B6CCT4   A0A1B6CEY4   A0A1B6C0U4   + More
A0A1B6LSD5   A0A1B6L3G5   A0A1B6L264   A0A1B6MR53   A0A1B6J8S6   A0A224X591   A0A1B6HFE4   A0A232EW19   K7JHC5   A0A0L7RH29   A0A310SED8   A0A154PFD2   E0VFR4   A0A0C9S1B8   A0A0C9RYX7   A0A336KLF3   A0A336MEI9   A0A0M8ZYZ7   A0A2H8TCQ7   A0A164RBB5   A0A1W4UZR7   A0A1W4VDC9   A0A146LHP2   A0A2M3YZF4   A0A1W4VC14   W5JW08   A0A2M4CZJ0   A0A146LHC1   A0A2M4A418   A0A2M4BA38   A0A0A9Y0I0   A0A0A9Y211   A0A2M4A2Y9   A0A0P5PQ09   A0A0P6FDE1   A0A0P6EL40   A0A0A9WME6   A0A2M4CLI9   A0A0P5PG33   A0A0A9Y833   A0A182FVX8   A0A0P5ZLI1   A0A2M4B8X3   A0A0P5CMD4   A0A0P5IH19   A0A0Q5VM08   A0A0N8E7G0   A0A0P5GD22   A0A0P6EHW8   B3NP30   A0A2S2NCX6   A0A0P5VRN3   A0A0P5VNJ4   A0A0P4Y9Z7   A0A0P6H2V5   A0A0N8DAE5   A0A0P5QUN2   A0A0P6CRF7   A0A0P5CTM7   A0A0N8EGX1   A0A0P5CW19   A0A0N8AAJ7   A0A0N8AHE6   A0A0N8EFF9   A0A0P4ZT61   A0A0P5BF15   A0A0P5PDU4   A0A0P6C0W5   A0A2M3ZZH5   A0A0P5D8V5   A0A0P5YXE7   A1ZAN6   A0A0P5YAW3   A0A0P5BYH5   A0A0P5BF40   A0A0P5YV04   Q8T9E3   A0A0P5Y2W1   A0A0P5ALS5   A0A0P5E7C4   A0A0P5UPY8   A0A0B4K7T7   O44381   A0A0P5WDP8  

Pubmed

19121390    28648823    20075255    20566863    26823975    20920257    + More
23761445    25401762    17994087    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    9428514   

EMBL

BABH01026813    BABH01026814    GECU01010962    JAS96744.1    GEDC01013923    JAS23375.1    + More
GEDC01026077    JAS11221.1    GEDC01025301    JAS11997.1    GEDC01030180    JAS07118.1    GEBQ01013488    JAT26489.1    GEBQ01021782    JAT18195.1    GEBQ01022246    JAT17731.1    GEBQ01001563    JAT38414.1    GECU01012161    JAS95545.1    GFTR01008761    JAW07665.1    GECU01034344    JAS73362.1    NNAY01001923    OXU22552.1    KQ414591    KOC70282.1    KQ797310    OAD46959.1    KQ434879    KZC09940.1    DS235123    EEB12220.1    GBYB01014566    JAG84333.1    GBYB01014570    JAG84337.1    UFQS01000449    UFQT01000449    SSX04115.1    SSX24480.1    SSX04113.1    SSX24478.1    KQ435794    KOX73980.1    GFXV01000080    MBW11885.1    LRGB01002190    KZS08498.1    GDHC01012173    JAQ06456.1    GGFM01000908    MBW21659.1    ADMH02000286    ETN67114.1    GGFL01006566    MBW70744.1    GDHC01011085    JAQ07544.1    GGFK01002174    MBW35495.1    GGFJ01000710    MBW49851.1    GBHO01017925    JAG25679.1    GBHO01022022    GBHO01017923    JAG21582.1    JAG25681.1    GGFK01001808    MBW35129.1    GDIQ01131260    JAL20466.1    GDIQ01065438    JAN29299.1    GDIQ01062441    JAN32296.1    GBHO01034007    JAG09597.1    GGFL01001957    MBW66135.1    GDIQ01131261    JAL20465.1    GBHO01034006    GBHO01017924    JAG09598.1    JAG25680.1    GDIP01041878    JAM61837.1    GGFJ01000137    MBW49278.1    GDIP01172109    JAJ51293.1    GDIQ01238178    JAK13547.1    CH954179    KQS62385.1    GDIQ01054388    JAN40349.1    GDIQ01242728    JAK08997.1    GDIQ01062442    JAN32295.1    EDV55669.1    KQS62386.1    KQS62387.1    GGMR01002411    MBY15030.1    GDIP01096372    JAM07343.1    GDIP01097624    JAM06091.1    GDIP01230563    JAI92838.1    GDIQ01035642    JAN59095.1    GDIP01053087    JAM50628.1    GDIQ01116265    JAL35461.1    GDIQ01088271    JAN06466.1    GDIP01165860    JAJ57542.1    GDIQ01027900    JAN66837.1    GDIP01164863    JAJ58539.1    GDIP01166361    JAJ57041.1    GDIP01147169    JAJ76233.1    GDIQ01031996    JAN62741.1    GDIP01208907    JAJ14495.1    GDIP01185562    JAJ37840.1    GDIQ01130058    JAL21668.1    GDIP01015011    JAM88704.1    GGFK01000632    MBW33953.1    GDIP01161264    JAJ62138.1    GDIP01051933    JAM51782.1    AE013599    AAM68489.1    AAM68490.2    GDIP01062225    JAM41490.1    GDIP01178166    JAJ45236.1    GDIP01185563    JAJ37839.1    GDIP01053088    JAM50627.1    AY069804    AAL39949.1    GDIP01064785    JAM38930.1    GDIP01197012    JAJ26390.1    GDIP01146066    JAJ77336.1    GDIP01113573    JAL90141.1    AFH08134.1    AF032870    AAC38820.1    GDIP01088275    JAM15440.1   

Proteomes

UP000005204    UP000215335    UP000002358    UP000053825    UP000076502    UP000009046    + More
UP000053105    UP000076858    UP000192221    UP000000673    UP000069272    UP000008711    UP000000803   

PRIDE

H9JF58    A1ZAN6    Q8T9E3    O44381   

Pfam

PF09128   RGS-like        + More
PF00130   C1_1
PF17820   PDZ_6
PF17838   PH_16
PF00621   RhoGEF
PF00595   PDZ
PF07773   DUF1619
PF07162   B9-C2
PF00572   Ribosomal_L13

Interpro

IPR002219   PE/DAG-bd        + More
IPR015212   RGS-like_dom       
IPR041489   PDZ_6       
IPR036305   RGS_sf       
IPR036034   PDZ_sf       
IPR001478   PDZ       
IPR020454   DAG/PE-bd       
IPR016137   RGS       
IPR000219   DH-domain       
IPR001849   PH_domain       
IPR035899   DBL_dom_sf       
IPR041020   PH_16       
IPR011993   PH-like_dom_sf       
IPR011677   DUF1619       
IPR010796   B9_dom       
IPR005822   Ribosomal_L13       
IPR036899   Ribosomal_L13_sf       

SUPFAM

SSF50156   SSF50156        + More
SSF48097   SSF48097       
SSF48065   SSF48065       
SSF52161   SSF52161       

Gene 3D

1.20.900.10     2.30.29.30     3.90.1180.10    

CDD

cd00029  C1
cd00160  RhoGEF
cd00392  Ribosomal_L13

ProteinModelPortal

H9JF58   A0A1B6JC30   A0A1B6DCQ4   A0A1B6CCT4   A0A1B6CEY4   A0A1B6C0U4   + More
A0A1B6LSD5   A0A1B6L3G5   A0A1B6L264   A0A1B6MR53   A0A1B6J8S6   A0A224X591   A0A1B6HFE4   A0A232EW19   K7JHC5   A0A0L7RH29   A0A310SED8   A0A154PFD2   E0VFR4   A0A0C9S1B8   A0A0C9RYX7   A0A336KLF3   A0A336MEI9   A0A0M8ZYZ7   A0A2H8TCQ7   A0A164RBB5   A0A1W4UZR7   A0A1W4VDC9   A0A146LHP2   A0A2M3YZF4   A0A1W4VC14   W5JW08   A0A2M4CZJ0   A0A146LHC1   A0A2M4A418   A0A2M4BA38   A0A0A9Y0I0   A0A0A9Y211   A0A2M4A2Y9   A0A0P5PQ09   A0A0P6FDE1   A0A0P6EL40   A0A0A9WME6   A0A2M4CLI9   A0A0P5PG33   A0A0A9Y833   A0A182FVX8   A0A0P5ZLI1   A0A2M4B8X3   A0A0P5CMD4   A0A0P5IH19   A0A0Q5VM08   A0A0N8E7G0   A0A0P5GD22   A0A0P6EHW8   B3NP30   A0A2S2NCX6   A0A0P5VRN3   A0A0P5VNJ4   A0A0P4Y9Z7   A0A0P6H2V5   A0A0N8DAE5   A0A0P5QUN2   A0A0P6CRF7   A0A0P5CTM7   A0A0N8EGX1   A0A0P5CW19   A0A0N8AAJ7   A0A0N8AHE6   A0A0N8EFF9   A0A0P4ZT61   A0A0P5BF15   A0A0P5PDU4   A0A0P6C0W5   A0A2M3ZZH5   A0A0P5D8V5   A0A0P5YXE7   A1ZAN6   A0A0P5YAW3   A0A0P5BYH5   A0A0P5BF40   A0A0P5YV04   Q8T9E3   A0A0P5Y2W1   A0A0P5ALS5   A0A0P5E7C4   A0A0P5UPY8   A0A0B4K7T7   O44381   A0A0P5WDP8  

PDB

3CX8     E-value=1.00616e-06,     Score=126

KEGG

101742925    K07532 Rho guanine nucleotide exchange factor 12 | (RefSeq) rho guanine nucleotide exchange factor 1

GO

GO:0005737   GO:0046872   GO:0035556   GO:0005089   GO:0035023   GO:0005840   GO:0003735   GO:0006412   GO:0008360   GO:0007349   GO:0030589   GO:0007374   GO:0035277   GO:0110072   GO:0009611   GO:0016331   GO:0005826   GO:0031532   GO:0070252   GO:0007370   GO:0007377   GO:0050770   GO:0007277   GO:0043519   GO:0030478   GO:0045177   GO:0007375   GO:0045178   GO:0007015   GO:0016476   GO:0035025   GO:0016328   GO:0045179   GO:0090254   GO:0016324   GO:0031461   GO:0016791   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

376

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1857

Exp number, first 60 AAs:

0.01628

Total prob of N-in:

0.00915

outside

1  -  376

 

 

Pi

320.640828

Theta

197.064404

Tajima's D

2.902016

CLR

0.206112

CSRT

0.974851257437128

Interpretation

Uncertain