Silkworm Genome Informatics Database

Gene

KWMTBOMO14269 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008156

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_rho_guanine_nucleotide_exchange_factor_11_[Bombyx_mori]

Location

Bomo_Chr24(-):345554-386485 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.039

CDS

ATGATGTGGTTTAAACGCGAACCGAAATCGGCTGTCGAGAAGCCGATCGAGAATGGTGGAAATGGGAAACTGAGGAAGAAGAAAACCGTCCTCCTGCAACCGACTCGCGAGTCCAGCGAGAGGGAGACGTCGACGGAGAGCGAGAAAGAGAAGCGACGGTATTCTGACATACTCGATATAAGGGTCTCTCAAGAGCGTCGCGATGAAAGCGACGAATCACTTTACGAATCAGCCGACGGTCACAGCGATGCGATATCGGCCAGCGATGACGCCATCCCGAGGCTCAAGACCCCAGCGATTAGCAAGGAATCTCTCAAGCTCGCCATTACGGACGAAGAAATCGAAGTGAGGAAGAAAGGACACAGGAAAACCATGTCCCTATCTAATCCTTTGGAAATCGTCAAGAATCTAGGAGATGAACTTTTAAGAGATTTCGACAAGAACAGCGATAAGAAGAAATCTAGAGAAAGCCTCTGGAGCGAAGAAGATAGAGAGTCAATACACGGATCCACTATGAAGCTGGATCAGATAAAAAAAGACAGCAAAAAAGACAGAAAAACCAGTAATACAGATCCGCCTAAACCCAGAAAGACAAGCAAAGGTTCTTCTGTGAGTGCTCTTAATTTCTTGAGAAGAAGAAAAACTCCAACTTCTACTAAACCCATAGAATCAGTGGCAGAAGATGGTGGGAAAGTGCTTTCTATTGAAGAGATATTGAGTTATACCAAATTATTCCTCGAAGGAGAGAAAAGGCATTCTTCTACCTGCCTCGCAAGGCCTCCAGTAGAGAGTGACAGTGACGATGAAGGACCCACACCGAAACAGATAGCAGAACACAGAAGACGGTTGAGTAGGCAGACCTCGAGGAGTAAAAGCAAAGTTCGTGGGAAGAGTCAGTCTTTAAAGGTTAATACGCTGAGGAAATCTCACAGCGGAACTTTGAAGAAAGGAAAAAAGAAGAGCGTGAAGACGCCTGTCAGTAGGAGTAGACAGTCTAGTGTCGTGGAACATAACATGCCCATTGTGAAAAAGAAGACTTCTGATTCGATGAGACATAGTTCATGGTTGTTCAGTGGATACAGAGGAGAGTCAAGAAGGGAGGGTTCGACGGACGAGCCGTCCGCCCCCGAAGTCGACGTTGATAGTAACGATGTCAACTCTAAAGATGCTGACAAGGAAACCAATTGGCGTACAACGACATCTAGCGGTCGCGGCGTGAACCGCGCCGAGAGCTGTCGCGAGCGTGACGCGCCCCGCCGCGGGAAGCACCGCAACGCCAGCGACCCCAACCGACTCACCGCACACAACAACCATGACTTGGAGCCCGGGGCGCCGACGGCCCCCTCCGGCAGCTCGAGCAGCTCGAGCTTATCATCCCGGAGCAATGAGAGCAACACCGTCGTAGCCGAACAACAAGCCACACAGTCGGACTGGTCCGAGGAGGACGAGCCGCTGGCCGCGCAGTGGGTGGACAGCGTGCCCCCCCACGTGCTGGACGCGCTCGACCTCAGCGCCAGGCTCCGCAAGCGGCAGGAGGTCATACACGAGCTAATAGTGTCTGAGGGCTCCCACGTCCGCTGGCTCAAAGTCCTGGGCGGCGTGTTCCTGCGCGGCCTAGAAGCGCAGCCGAGCTTACTGCCCCCCGACGAGCTGAGAGCTTTGTTCCCAAACTTACCGGCCGTGAGAGAGAGGCACCAGCGGCTCTACTGCTCGCTGAAAGCTCTCAGAGCGGTGCCCGCCAACCCGCTGGTCACCATCCGACCATTAGCTGATGCTATTCTGGAGACGCTGGGCGATCCGGGCTACGCCCCGTGCCTGTCCCGGTTCTGCAGCGGACAGCGCCTCGCGCTGGACGTGCTCCGGGAGCGGAGACGGAAGAACAAGGAGCTGCACCAGTTCCTGTCCAGCAAGGAGCAGCTGCCGCTCTGCGGGCGCCTGCAGCTCAGGGACCTGCTGGCCTGTGTGTGGCAGAGGCTGACAAAGTACCAGCTGCTGCTGGAGAACATCCTGAAGACGGTATCGGAGGGCGACGAGGAGAGCGCGGAGGACGTGGGGCGGCTGCGGCGCGCGCTCGCCGTCGCCAAGGACGTGCTGCACGGAGTCGACACCGCCGTGCGCACCGCAGAGAACGAGCACAGGTTGCGCAGCATCCAGCAGAAGCTGGAGGTCCGCGTGCCGGCCGGCGGCGAGTGGGAGGAGCTGCGCCGGCTCGACCTCACGCAGCGCGCCCTCCGCCTCGAGGGAGACCTGGCCATCCGAGGAGACTCCACCAAGAAGATACACGTGCTGGCGTTGATGCTAGAAGACAGTTTGGTCCTGCTGCAGCGGGAGGGCGACAAGTTCGTGCTGAAGCCGATCCCGCAGTCCAGCAGCGCGCAGCACCAGCTGCTGTCGCCGCTCGTCAAGTGGGACAAGGTGCTGTTCCGGCCCAACGCGGCCGTCAGGAACACGTTCTTCCTCATGAACATCAACGGCGTCCAGATGCACGAGCTCTCCGCCAGCAGCGCGCAGGAGTACGCCGCCTGGGTCAAGCACATAGAAGAGGCTCCGCTGGCAAAGCTGACCGAGTTGAAGTCGAGCCTGACGCCTTCCCACCAGACCAGCCGCTCCGTCGACGACACGGAATCTTACAGAACTAACAAGGTCGCCCTTAACGTGTCGTGTCATCTGCCAGGCGCCAGCGTGTCGCGCAACCCCTCCGACGCGTCGGAGAAGTCGCCCCTCCCCGCCGACGAGCCCTCGCCGCCAGAGCGAGACGGGACCTCCGCCGACCGGAGCCCCGCCGAGAGCGAGAGGGACGACAACACCCCCACCAGACTCGAGGAGAGGCGCTCCCTGGACAAGGAGGAAGTGTCCGACAGAGAGGAGAAGCACACGCCGCGGCGGCCGACGGTGGGCTGCATCAGCACGCACGTGTGCGCGCCCCCCGCCCCCCTGCAGGGCCCCGCCGCGCTGGCCGTGCGCGAGCCGCCCGTGCACACCGCGCGCACAGTCTGCACGCCGGAAGAGTACCTGCGGCGCCTGGACTCGCAGATCCGGCGCGCGATGCTGGCCAAGCGCGACATCGTGGCCGACATGCTGGGCGTGCCGCGCCGCGACTACGAGCAGCTGGCCGAGCTGTGCGTGGCCGACACGCTGGGGACCGTCGACATAGACCAGGAGCTGCGTTCGACGGGCGACCGGCTCTCCCGCTCCGACAGCGTGGAGGAGGAGGGCGACAGGGCGGAGCCGGACGTGCACCAGCTGCTGCTGGCGACGTTCGCGCAGGCGGACGAGATCCTGTCGTGCGTGCGGCGCGGCCTGCGCGCGTCCGAGCCCGCCGCCGTGCTGGCGCGCGCCCGCCCGCCCCGCGCCGCCAGGCACCTCGCCGCCGACGACCTGATTCCACTAGCGCCGCTGTCGCCCGAGGGCGGGGCGGGGGCTGAGGGCGCGGAGCGGCGCGGGGCGGGGGGCACGTGCGCGCCCTGCGCCGCCGGAGCCCCGCCCCCCGACGCCGGGGAGGGCGGCGCCCTGGACGACAGCTACGAAGGCGAGGTGTCGGCGCAGGAGCTGGCGTGTCGCGTGGCCGGTGCGGCCCTGGGGCTGCAGGACGCGGCGCGGCGGCTGCTGGTGGCGTGCACCGCGCCCGCCGCCGCGCCGCCGCGCCTGCGGGAGCACCTCGCCGTGCTCAGCGAGACCAACCACCGCCTCGCGCACCGCGCCCTGCGAGCACAACAAGCGGCGCCGGACGCGACCGCCGACACGGACGCGGCGCCCGGAGCTGCGACACCGGAGCAGGCGAGCAACGGAGGGTGA

Protein

MMWFKREPKSAVEKPIENGGNGKLRKKKTVLLQPTRESSERETSTESEKEKRRYSDILDIRVSQERRDESDESLYESADGHSDAISASDDAIPRLKTPAISKESLKLAITDEEIEVRKKGHRKTMSLSNPLEIVKNLGDELLRDFDKNSDKKKSRESLWSEEDRESIHGSTMKLDQIKKDSKKDRKTSNTDPPKPRKTSKGSSVSALNFLRRRKTPTSTKPIESVAEDGGKVLSIEEILSYTKLFLEGEKRHSSTCLARPPVESDSDDEGPTPKQIAEHRRRLSRQTSRSKSKVRGKSQSLKVNTLRKSHSGTLKKGKKKSVKTPVSRSRQSSVVEHNMPIVKKKTSDSMRHSSWLFSGYRGESRREGSTDEPSAPEVDVDSNDVNSKDADKETNWRTTTSSGRGVNRAESCRERDAPRRGKHRNASDPNRLTAHNNHDLEPGAPTAPSGSSSSSSLSSRSNESNTVVAEQQATQSDWSEEDEPLAAQWVDSVPPHVLDALDLSARLRKRQEVIHELIVSEGSHVRWLKVLGGVFLRGLEAQPSLLPPDELRALFPNLPAVRERHQRLYCSLKALRAVPANPLVTIRPLADAILETLGDPGYAPCLSRFCSGQRLALDVLRERRRKNKELHQFLSSKEQLPLCGRLQLRDLLACVWQRLTKYQLLLENILKTVSEGDEESAEDVGRLRRALAVAKDVLHGVDTAVRTAENEHRLRSIQQKLEVRVPAGGEWEELRRLDLTQRALRLEGDLAIRGDSTKKIHVLALMLEDSLVLLQREGDKFVLKPIPQSSSAQHQLLSPLVKWDKVLFRPNAAVRNTFFLMNINGVQMHELSASSAQEYAAWVKHIEEAPLAKLTELKSSLTPSHQTSRSVDDTESYRTNKVALNVSCHLPGASVSRNPSDASEKSPLPADEPSPPERDGTSADRSPAESERDDNTPTRLEERRSLDKEEVSDREEKHTPRRPTVGCISTHVCAPPAPLQGPAALAVREPPVHTARTVCTPEEYLRRLDSQIRRAMLAKRDIVADMLGVPRRDYEQLAELCVADTLGTVDIDQELRSTGDRLSRSDSVEEEGDRAEPDVHQLLLATFAQADEILSCVRRGLRASEPAAVLARARPPRAARHLAADDLIPLAPLSPEGGAGAEGAERRGAGGTCAPCAAGAPPPDAGEGGALDDSYEGEVSAQELACRVAGAALGLQDAARRLLVACTAPAAAPPRLREHLAVLSETNHRLAHRALRAQQAAPDATADTDAAPGAATPEQASNGG

Uniprot

A0A2W1BGY8

Pubmed

28756777

EMBL

KZ150056 PZC74322.1

Pfam

PF17838 PH_16 + More
PF00621 RhoGEF

Interpro

IPR000219   DH-domain        + More
IPR011993   PH-like_dom_sf
IPR035899   DBL_dom_sf
IPR041020   PH_16

SUPFAM

SSF48065 SSF48065

Gene 3D

1.20.900.10 2.30.29.30

CDD

cd00160 RhoGEF

ProteinModelPortal

A0A2W1BGY8

PDB

3T06 E-value=1.68674e-38, Score=405

KEGG

101742925 K07532 Rho guanine nucleotide exchange factor 12 | (RefSeq) rho guanine nucleotide exchange factor 1

GO

GO:0035023 GO:0005089 GO:0031461 GO:0016791 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

1264

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1264

Pi

283.148016

Theta

194.71131

Tajima's D

1.811281

CLR

0.311536

CSRT

0.849557522123894

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics