Gene

KWMTBOMO14265

Pre Gene Modal

BGIBMGA008160

Annotation

Tetraspanin_[Operophtera_brumata]

Location

Bomo_Chr24(-):290309-291315      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.557

CDS

ATGACTTCGTTGTGTCTCACGGTCTTCCTGTGCGCATTCAATGTCATACAAGTGCTGTCCGCGTCAGTCCTCGGTGGTGTAGCGATATGGTCCTTCATTGAGGTCGTGAGCCTGACCTCCCTGCGCAACCCCATCCATTACCAGCTGAAGCAGACGTTGAACTGGCCCGAGGTGCTCCCATGGGTCTTTCTCATGGCGGCCATTTTGACCATACTGACCGACATATGTGGCTTGTGCGGTTCGAAGAGGAAGAGTCGACCTCTGATTTTGCTGTACGTGGTACTTCAAATGATGTCCATATTGTTGCTGGTTGGTGCTCCTCTCGTCGCCCTTACCCTCGCAGAGGGACCTAACACCGCAGAATTCTTCAAAAGCACAATGTGGGACGTCTTCTACACTAGTATAGACAGCCAAGATGGCGCGTACAATTCCTTCGAAGAGCGGTTGCGATGCTGCGGCGTCAGTAGTCCCAGAGACTATGTGCCAAAAAGGAACAACTTCCCTGCATCTTGCTGCTATTCGGGTAAGCCCTGTGATTTCTCAGATCATTTCGCGAACAAATTGAGCGGATGCAACGGCGTTGTGGACAAATACACCGAATATTTCATCAAAGGAATGTCTGTGGGATCGGTCGTGGTGGCGATCGTTGGCGTAATTGGGTTTTTGATTGCCGTGGTCTTGTCCATGAAGATGAAGACCAAGAAATTGGAACCTGCCGTCGAAACCGAAGCTGATTGTCAGAAAGTGTTGTTGTAA

Protein

MTSLCLTVFLCAFNVIQVLSASVLGGVAIWSFIEVVSLTSLRNPIHYQLKQTLNWPEVLPWVFLMAAILTILTDICGLCGSKRKSRPLILLYVVLQMMSILLLVGAPLVALTLAEGPNTAEFFKSTMWDVFYTSIDSQDGAYNSFEERLRCCGVSSPRDYVPKRNNFPASCCYSGKPCDFSDHFANKLSGCNGVVDKYTEYFIKGMSVGSVVVAIVGVIGFLIAVVLSMKMKTKKLEPAVETEADCQKVLL

Similarity

Belongs to the tetraspanin (TM4SF) family.

Feature

chain  Tetraspanin

Uniprot

H9JF63   H9JF64   A0A2H1WQL1   A0A0L7LID5   A0A194Q8C3   A0A0N0PCZ3   + More
A0A2A4JVV7   A0A2W1BL09   A0A212FJD9   H9JF65   B2DBM8   A0A0N0PD86   A0A2W1BKX8   A0A2A4JV62   S4PCJ6   A0A2H1WQP0   A0A212FJB6   A0A0L7LIZ1   A0A1E1W0A5   A0A1Y1L5M1   A0A315UWP8   A0A151I4G3   H3CW26   A0A3B5KLI5   A0A1L8DK44   A0A147A3D7   A0A1L8DK45   Q4SHG2   A0A3S2N5Y2   Q1LWF8   H2UYH5   Q6P031   A0A146WIY6   A0A3B4BBC3   A0A3B3ULM4   A0A3P9PCA8   W8ATQ8   A0A3B3BHQ0   A0A3B3ULN6   M3ZCS7   A0A3P9N9M2   A0A3P9N9K2   A0A151JNQ2   A0A315WBC6   A0A3B5MBA1   A0A3B5RBC2   A0A3B3YJ36   A0A087XCU0   A0A147A2Y1   A0A3B4ZYP6   A0A0S7HNP1   A0A0C9R0W0   A0A3Q1JAK1   A0A3B3S7P0   A0A146PKL7   A0A0S7LJQ2   A0A131ZWC3   A0A0C9R490   A0A0P5U5V8   A0A139WAJ4   A0A0C9QLV9   A0A0C9Q5P6   A0A0P6CK49   A0A3Q0STD0   A0A1W5B0K8   A0A0T6B8H7   D3PG37   A0A3Q2GJ42   A0A0K2TX70   A0A0L0C071   A0A087XCV8   A0A3Q1GMK1   Q16HS3   A0A0P4WC72   A0A0P6IJZ2   A0A3B5MHM8   A0A3Q4AFS0   A0A3B4X0R8   A0A3Q1AGY3   A0A3P8RJ81   M4A2U9   A0A3Q1BXJ2   A0A3B4UPQ0   E0VNB3   A0A224XM16   U6J0I8   J3S154   A0A3B4UNV9   A0A068Y7H8   I3JEP3  

Pubmed

19121390    26227816    26354079    28756777    22118469    18712529    + More
23622113    28004739    29703783    15496914    21551351    23594743    25463417    24495485    29451363    23542700    29240929    26555130    18362917    19820115    26108605    17510324    20566863    24013640    23485966    23025625    25186727   

EMBL

BABH01026802    ODYU01010303    SOQ55318.1    JTDY01001003    KOB75145.1    KQ459386    + More
KPJ01240.1    KQ460423    KPJ14817.1    NWSH01000516    PCG75916.1    KZ150056    PZC74324.1    AGBW02008277    OWR53846.1    AB264712    BAG30787.1    KPJ01239.1    KPJ14818.1    PZC74325.1    PCG75915.1    GAIX01005382    JAA87178.1    SOQ55317.1    OWR53847.1    KOB75146.1    GDQN01010637    GDQN01002817    JAT80417.1    JAT88237.1    GEZM01064003    JAV68874.1    NHOQ01002686    PWA15541.1    KQ976462    KYM84644.1    GFDF01007252    JAV06832.1    GCES01013252    JAR73071.1    GFDF01007251    JAV06833.1    CAAE01014581    CAF99920.1    CM012439    RVE74216.1    CU656039    FO834814    BC065859    AAH65859.1    GCES01057346    JAR28977.1    GAMC01018522    JAB88033.1    KQ978844    KYN27991.1    NHOQ01000682    PWA29156.1    AYCK01012806    GCES01013390    JAR72933.1    GBYX01438561    JAO42792.1    GBYB01001630    JAG71397.1    GCES01142047    JAQ44275.1    GBYX01165500    GBYX01165498    JAO89687.1    JXLN01004310    KPM03168.1    GBYB01001631    JAG71398.1    GDIP01134610    LRGB01002559    JAL69104.1    KZS07150.1    KQ971381    KYB24952.1    GBYB01001632    JAG71399.1    GBYB01009418    JAG79185.1    GDIP01007029    JAM96686.1    LJIG01009211    KRT83534.1    BT120593    ADD24233.1    HACA01012936    CDW30297.1    JRES01001077    KNC25695.1    AYCK01017622    CH478145    EAT33803.1    GDRN01082066    JAI61911.1    GDIQ01020589    JAN74148.1    DS235335    EEB14869.1    GFTR01004292    JAW12134.1    LK028576    APAU02000005    CDS15929.1    EUB63766.1    JU176095    AFJ51619.1    LN902841    CDS40740.1    AERX01024909   

Proteomes

UP000005204    UP000037510    UP000053268    UP000053240    UP000218220    UP000007151    + More
UP000078540    UP000007303    UP000005226    UP000000437    UP000261520    UP000261500    UP000242638    UP000261560    UP000002852    UP000078492    UP000261380    UP000261480    UP000028760    UP000261400    UP000265040    UP000261540    UP000076858    UP000007266    UP000261340    UP000192224    UP000265020    UP000037069    UP000257200    UP000008820    UP000261620    UP000261360    UP000257160    UP000265080    UP000261420    UP000009046    UP000019149    UP000017246    UP000005207   

PRIDE

H9JF63    H9JF64    H9JF65   

Pfam

PF00335   Tetraspanin

Interpro

IPR018499   Tetraspanin/Peripherin        + More
IPR000301   Tetraspanin       
IPR008952   Tetraspanin_EC2_sf       
IPR018503   Tetraspanin_CS       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9JF63   H9JF64   A0A2H1WQL1   A0A0L7LID5   A0A194Q8C3   A0A0N0PCZ3   + More
A0A2A4JVV7   A0A2W1BL09   A0A212FJD9   H9JF65   B2DBM8   A0A0N0PD86   A0A2W1BKX8   A0A2A4JV62   S4PCJ6   A0A2H1WQP0   A0A212FJB6   A0A0L7LIZ1   A0A1E1W0A5   A0A1Y1L5M1   A0A315UWP8   A0A151I4G3   H3CW26   A0A3B5KLI5   A0A1L8DK44   A0A147A3D7   A0A1L8DK45   Q4SHG2   A0A3S2N5Y2   Q1LWF8   H2UYH5   Q6P031   A0A146WIY6   A0A3B4BBC3   A0A3B3ULM4   A0A3P9PCA8   W8ATQ8   A0A3B3BHQ0   A0A3B3ULN6   M3ZCS7   A0A3P9N9M2   A0A3P9N9K2   A0A151JNQ2   A0A315WBC6   A0A3B5MBA1   A0A3B5RBC2   A0A3B3YJ36   A0A087XCU0   A0A147A2Y1   A0A3B4ZYP6   A0A0S7HNP1   A0A0C9R0W0   A0A3Q1JAK1   A0A3B3S7P0   A0A146PKL7   A0A0S7LJQ2   A0A131ZWC3   A0A0C9R490   A0A0P5U5V8   A0A139WAJ4   A0A0C9QLV9   A0A0C9Q5P6   A0A0P6CK49   A0A3Q0STD0   A0A1W5B0K8   A0A0T6B8H7   D3PG37   A0A3Q2GJ42   A0A0K2TX70   A0A0L0C071   A0A087XCV8   A0A3Q1GMK1   Q16HS3   A0A0P4WC72   A0A0P6IJZ2   A0A3B5MHM8   A0A3Q4AFS0   A0A3B4X0R8   A0A3Q1AGY3   A0A3P8RJ81   M4A2U9   A0A3Q1BXJ2   A0A3B4UPQ0   E0VNB3   A0A224XM16   U6J0I8   J3S154   A0A3B4UNV9   A0A068Y7H8   I3JEP3  

KEGG

101736223    K06537 CD151 antigen | (RefSeq) uncharacterized LOC101736223

GO

GO:0016021   GO:0016477   GO:0005887   GO:0004523   GO:0031461   GO:0016791   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Membrane  

Length:

251

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

90.97235

Exp number, first 60 AAs:

25.39574

Total prob of N-in:

0.99543

POSSIBLE N-term signal

sequence

inside

1  -  6

TMhelix

7  -  29

outside

30  -  58

TMhelix

59  -  81

inside

82  -  87

TMhelix

88  -  110

outside

111  -  204

TMhelix

205  -  227

inside

228  -  251

 

 

Pi

389.498818

Theta

234.76371

Tajima's D

2.07983

CLR

0

CSRT

0.892405379731013

Interpretation

Uncertain