Gene

KWMTBOMO14264

Pre Gene Modal

BGIBMGA008161

Annotation

Tetraspanin_[Operophtera_brumata]

Location

Bomo_Chr24(-):284964-286115      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.921

CDS

ATGGCCTCCACCGTCCTCACCGCGACCACGTACGTTCTAAACACGCTGCAGATGCTCCTGAGCCTCGGCCTCGCCTGTGCCTCGATATGGTTCTTCGTCGAGGTAGTCAGCATCACCTCCCTTCGGAACACAAATCACTACCTCTTAGACTACAACGTGTACTGGCCTCAGGCGATACCATGGGTGTTTTGTGTAGTGGCCTTGATGGCAATGTTCACGGCGTGCTGCGGGTTCGCCGGCGCTAGCAAGCGCAGCAAAGGACTGCTGGTGACGCACATTATATTCCAATCAGTTTCGGTGTTGCTGCTCATTGTGATCGCGATAATTGCCTTGACGCTGGCCGACTCTGATGGGACGGCGAGTTTCGTCGGCGACACGATATGGGACGCGTTCATCCACGCTCAGAACGACCACGGGATAGAGTCCGCTTTCGGCGTCATGGAGAAGAGACTGCAATGCTGCGGCGCTATGAGCCCTCGCGACTACATCAACAAGAGGAATGAGTTCCCGGTCTCGTGCTGCGACACCTACTACCACGGCTGGATCGGGACCTACAACATCATCTGCGACTTCTCCAACTCGCTGGCCAACAGCCGCCACGGCTGCTCCAAGGTCGCCTCCGAGTACACGAGCATAGTGATAAAGGCATTCTCTGCGACGTCCGCCTTCATAGCGCTTATTGGCGTCATCAATTTGTTTGTGATGATTGCGCTCCTGAGGAAACTGAAGAATCGACATCATCCCAAAGTGTTAGTCGCTCAGTACGAAGCGGAGAGCAAGAAGGTGTTACTATAA

Protein

MASTVLTATTYVLNTLQMLLSLGLACASIWFFVEVVSITSLRNTNHYLLDYNVYWPQAIPWVFCVVALMAMFTACCGFAGASKRSKGLLVTHIIFQSVSVLLLIVIAIIALTLADSDGTASFVGDTIWDAFIHAQNDHGIESAFGVMEKRLQCCGAMSPRDYINKRNEFPVSCCDTYYHGWIGTYNIICDFSNSLANSRHGCSKVASEYTSIVIKAFSATSAFIALIGVINLFVMIALLRKLKNRHHPKVLVAQYEAESKKVLL

Similarity

Belongs to the tetraspanin (TM4SF) family.

Feature

chain  Tetraspanin

Uniprot

H9JF64   A0A2W1BL09   A0A2H1WQL1   A0A2A4JVV7   A0A0L7LID5   A0A212FJB6   + More
A0A0N0PCZ3   A0A194Q8C3   A0A1E1W0A5   A0A0N0PD86   B2DBM8   H9JF65   S4PCJ6   A0A212FJD9   A0A2W1BKX8   A0A2A4JV62   A0A0L7LIZ1   H9JF63   A0A2H1WQP0   I4DMY0   K7IWT9   I4DJ82   A0A2H1VAS9   A0A194Q3K1   Q9NB08   A0A2A4IYD2   S4PWL6   A0A1A9V2R9   A0A1B0AAV4   C1L758   A0A1E1WV10   S4PYD2   A0A1E1W4P8   C1L618   D2A3F2   A0A1W4WSA2   C1L756   O44420   V9KJ75   A0A212F0C8   C1L617   A0A1B0FIK7   A0A1A9YGD4   A0A1B0AYN9  

Pubmed

19121390    28756777    26227816    22118469    26354079    18712529    + More
23622113    22651552    20075255    11122467    18362917    19820115    9370241    9756983    24402279   

EMBL

BABH01026802    KZ150056    PZC74324.1    ODYU01010303    SOQ55318.1    NWSH01000516    + More
PCG75916.1    JTDY01001003    KOB75145.1    AGBW02008277    OWR53847.1    KQ460423    KPJ14817.1    KQ459386    KPJ01240.1    GDQN01010637    GDQN01002817    JAT80417.1    JAT88237.1    KPJ14818.1    AB264712    BAG30787.1    KPJ01239.1    GAIX01005382    JAA87178.1    OWR53846.1    PZC74325.1    PCG75915.1    KOB75146.1    SOQ55317.1    AK402648    BAM19270.1    AAZX01011889    AAZX01017071    AK401350    BAM17972.1    ODYU01001560    SOQ37945.1    KQ459472    KPJ00118.1    AF274023    AAF90149.1    NWSH01005565    PCG64123.1    GAIX01006573    JAA85987.1    FN314804    CAX70536.1    GDQN01000423    JAT90631.1    GAIX01003493    JAA89067.1    GDQN01010381    GDQN01009120    JAT80673.1    JAT81934.1    FN314413    CAX70146.1    KQ971338    EFA01921.1    FN314802    CAX70534.1    AF036955    AAC69992.1    JW865519    AFO98036.1    AGBW02011105    OWR47199.1    FN314412    CAX70145.1    CCAG010006436    JXJN01005895   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000053240    UP000053268    + More
UP000002358    UP000078200    UP000092445    UP000007266    UP000192223    UP000092444    UP000092443    UP000092460   

PRIDE

H9JF64    H9JF65    H9JF63   

Pfam

PF00335   Tetraspanin

Interpro

IPR008952   Tetraspanin_EC2_sf        + More
IPR018499   Tetraspanin/Peripherin       
IPR000301   Tetraspanin       
IPR018503   Tetraspanin_CS       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9JF64   A0A2W1BL09   A0A2H1WQL1   A0A2A4JVV7   A0A0L7LID5   A0A212FJB6   + More
A0A0N0PCZ3   A0A194Q8C3   A0A1E1W0A5   A0A0N0PD86   B2DBM8   H9JF65   S4PCJ6   A0A212FJD9   A0A2W1BKX8   A0A2A4JV62   A0A0L7LIZ1   H9JF63   A0A2H1WQP0   I4DMY0   K7IWT9   I4DJ82   A0A2H1VAS9   A0A194Q3K1   Q9NB08   A0A2A4IYD2   S4PWL6   A0A1A9V2R9   A0A1B0AAV4   C1L758   A0A1E1WV10   S4PYD2   A0A1E1W4P8   C1L618   D2A3F2   A0A1W4WSA2   C1L756   O44420   V9KJ75   A0A212F0C8   C1L617   A0A1B0FIK7   A0A1A9YGD4   A0A1B0AYN9  

KEGG

101736086    no KO assigned | (RefSeq) uncharacterized LOC101736086

GO

GO:0016021   GO:0005887   GO:0004523   GO:0031461   GO:0016791   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Membrane  

Length:

264

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

90.4865700000001

Exp number, first 60 AAs:

24.74364

Total prob of N-in:

0.99318

POSSIBLE N-term signal

sequence

inside

1  -  19

TMhelix

20  -  39

outside

40  -  58

TMhelix

59  -  81

inside

82  -  87

TMhelix

88  -  110

outside

111  -  216

TMhelix

217  -  239

inside

240  -  264

 

 

Pi

23.706191

Theta

22.086707

Tajima's D

0.173604

CLR

4.895579

CSRT

0.421178941052947

Interpretation

Uncertain